Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rfc1

Gene Name Gene ID Reads Annotation
rfc1 ENSDARG00000054799 1416 replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]










Genes with expression patterns similar to rfc1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rfc1 ENSDARG00000054799 1416 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]
2. atxn7l3 ENSDARG00000029331 531 2.721 - - 0.977 - 0.986 0.758 - - - ataxin 7-like 3 [Source:ZFIN;Acc:ZDB-GENE-030616-253]
3. wu:fc51f04 wu:fc51f04 7074 2.446 - 0.749 - 0.790 0.907 - - - -
4. wu:fq41a10 wu:fq41a10 7009 2.294 - 0.787 0.773 0.734 - - - - -
5. med13b ENSDARG00000003910 1143 1.963 - - 0.977 - 0.986 - - - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
6. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.915 - - 0.959 - 0.956 - - - - ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
7. nol9 ENSDARG00000077751 2471 1.915 - - 0.949 - 0.966 - - - - nucleolar protein 9 [Source:ZFIN;Acc:ZDB-GENE-070629-1]
8. nxf1 ENSDARG00000055076 3251 1.899 - - 0.929 - 0.970 - - - - nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
9. rab5c ENSDARG00000026712 4733 1.885 - - 0.949 - 0.936 - - - - RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
10. gpbp1l1 ENSDARG00000075569, ENSDARG00000112704 3478 1.868 - - 0.974 - 0.894 - - - - GC-rich promoter binding protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-031118-220]
11. cttnbp2nl cttnbp2nl 166 1.836 - 0.858 0.978 - - - - - -
12. sf3b2 ENSDARG00000018049 4675 1.83 - - 0.903 - 0.927 - - - - splicing factor 3b, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070928-1]
13. sox1a ENSDARG00000069866, ENSDARG00000110682, ENSDARG00000114571 576 1.817 - 0.831 - - 0.986 - - - - SRY (sex determining region Y)-box 1a [Source:ZFIN;Acc:ZDB-GENE-040718-186]
14. aatf ENSDARG00000025467, ENSDARG00000109548 796 1.809 - - - - 0.987 - 0.822 - - apoptosis antagonizing transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-9654]
15. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.791 - - - 0.818 0.973 - - - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
16. myo1b ENSDARG00000024694 1761 1.788 - - 0.970 - - - 0.818 - - myosin IB [Source:ZFIN;Acc:ZDB-GENE-030131-695]
17. CABZ01081490.1 ENSDARG00000111653 11892 1.785 - - 0.861 - 0.924 - - - -
18. mybbp1a ENSDARG00000078214 2458 1.78 - - 0.923 - - - 0.857 - - MYB binding protein (P160) 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9864]
19. clu ENSDARG00000010434 498 1.779 - 0.796 - - 0.983 - - - - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
20. GRAMD4 GRAMD4 1967 1.769 - - - - 0.982 - 0.787 - -
21. sh3rf1 ENSDARG00000070470 1463 1.764 - - 0.963 - - - 0.801 - - SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]
22. fam92a1 ENSDARG00000004436 658 1.759 - - 0.971 - - - 0.788 - - family with sequence similarity 92, member A1 [Source:ZFIN;Acc:ZDB-GENE-040801-123]
23. cops4 ENSDARG00000043732 1508 1.751 - - 0.954 - - - 0.797 - - COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-030131-4317]
24. nup50 ENSDARG00000017454 4425 1.738 - - - 0.780 0.958 - - - - nucleoporin 50 [Source:ZFIN;Acc:ZDB-GENE-030131-1689]
25. kera ENSDARG00000056938 2434 1.735 - 0.767 - - 0.968 - - - - keratocan [Source:ZFIN;Acc:ZDB-GENE-041210-165]
26. dvl3a ENSDARG00000015707 1132 1.722 - - - - 0.983 - 0.739 - - dishevelled segment polarity protein 3a [Source:ZFIN;Acc:ZDB-GENE-010319-1]
27. rca2.1 ENSDARG00000056075 3410 1.717 - - - - 0.979 - 0.738 - - regulator of complement activation group 2 gene 1 [Source:ZFIN;Acc:ZDB-GENE-050320-60]
28. trim3b ENSDARG00000005397 680 1.717 - - 0.977 - - - 0.740 - - tripartite motif containing 3b [Source:ZFIN;Acc:ZDB-GENE-070112-1132]
29. bcl9 ENSDARG00000036687 1124 1.715 - 0.741 0.974 - - - - - - B cell CLL/lymphoma 9 [Source:ZFIN;Acc:ZDB-GENE-090313-135]
30. tnw 16679 1.711 - 0.787 0.924 - - - - - - tenascin W, transcript variant X2
31. efnb3b ENSDARG00000042277 5823 1.703 - 0.771 0.932 - - - - - - ephrin-B3b [Source:ZFIN;Acc:ZDB-GENE-010618-3]
32. atoh1b ENSDARG00000099564 494 1.697 - - 0.968 0.729 - - - - - atonal bHLH transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-041201-1]
33. lgi1a ENSDARG00000020493 1218 1.696 - 0.707 - - 0.989 - - - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
34. ctdspl2b ENSDARG00000060586 1682 1.689 - - - - 0.978 - 0.711 - - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-1809]
35. tubgcp2 ENSDARG00000013079 1520 1.689 - - 0.966 - 0.723 - - - - tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
36. AL844567.1 AL844567.1 1605 1.683 - - 0.969 0.714 - - - - -
37. nhlh2 ENSDARG00000025495 1860 1.68 - 0.713 0.967 - - - - - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
38. cplx2l ENSDARG00000018997 3975 1.673 - 0.701 0.972 - - - - - - complexin 2, like [Source:ZFIN;Acc:ZDB-GENE-040718-160]
39. CU633999.1 ENSDARG00000098197 2880 1.668 - 0.701 - - 0.967 - - - -
40. nrarpb ENSDARG00000018958 6225 1.667 - 0.761 - - 0.906 - - - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
41. carm1 ENSDARG00000018698 5599 1.665 - - 0.937 0.728 - - - - - coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
42. dlb ENSDARG00000004232 5120 1.653 - 0.751 0.902 - - - - - - deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
43. eftud2 ENSDARG00000012261 3081 1.651 - - 0.933 - - - - - 0.718 elongation factor Tu GTP binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1569]
44. mapk12b ENSDARG00000006409 2246 1.645 - 0.732 0.913 - - - - - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
45. pygo2 ENSDARG00000036772 2510 1.636 - - - 0.735 0.901 - - - - pygopus homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050809-108]
46. meis2b ENSDARG00000077840 5166 1.635 - - 0.808 - 0.827 - - - - Meis homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-000210-23]
47. znf865 ENSDARG00000036698 15532 1.629 - - - 0.721 0.908 - - - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
48. brd3b ENSDARG00000100129 6387 1.619 - - - 0.732 0.887 - - - - bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
49. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 1.601 - 0.786 0.815 - - - - - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
50. ccne2 ENSDARG00000098529 4695 1.584 - - - - - 0.828 0.756 - - cyclin E2 [Source:ZFIN;Acc:ZDB-GENE-030131-9689]
51. timm17b ENSDARG00000060124 125 1.57 - 0.781 - - - - 0.789 - - translocase of inner mitochondrial membrane 17 homolog B (yeast) [Source:ZFIN;Acc:ZDB-GENE-081104-144]
52. top1l ENSDARG00000070545 40529 1.566 - - 0.842 0.724 - - - - - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
53. her6 ENSDARG00000006514, ENSDARG00000111099 7477 1.55 - - - - 0.818 - - - 0.732 hairy-related 6 [Source:ZFIN;Acc:ZDB-GENE-980526-144]
54. aftpha ENSDARG00000069249 867 1.529 - - - - - 0.809 0.720 - - aftiphilin a [Source:ZFIN;Acc:ZDB-GENE-030131-1437]
55. cdkn2aipnl ENSDARG00000053395 5107 1.525 - 0.774 - 0.751 - - - - - CDKN2A interacting protein N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041010-154]
56. dbx1a ENSDARG00000086393 3161 1.516 - 0.812 - - 0.704 - - - - developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
57. sox2 ENSDARG00000070913 2763 1.509 - 0.792 - 0.717 - - - - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
58. tbl1xr1b ENSDARG00000008966 2203 1.493 - - - 0.778 - - 0.715 - - transducin (beta)-like 1 X-linked receptor 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1192]
59. plecb ENSDARG00000021987 13621 1.487 - 0.741 0.746 - - - - - - plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
60. ndufa13 160 1.486 - 0.734 - - - 0.752 - - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13
61. mcm5 ENSDARG00000019507 6407 1.478 - 0.719 0.759 - - - - - - minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
62. usp42 ENSDARG00000077300 926 1.466 - - - - - 0.703 0.763 - - ubiquitin specific peptidase 42 [Source:ZFIN;Acc:ZDB-GENE-030131-5739]
63. sema4ab ENSDARG00000062352 409 1.454 - 0.712 - - - - 0.742 - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
64. phactr4b ENSDARG00000032221 1389 1.451 - 0.732 - 0.719 - - - - - phosphatase and actin regulator 4b [Source:ZFIN;Acc:ZDB-GENE-040426-1131]
65. ncapd3 ENSDARG00000034773, ENSDARG00000111405 823 1.437 - - - 0.713 - 0.724 - - - non-SMC condensin II complex, subunit D3 [Source:ZFIN;Acc:ZDB-GENE-040426-737]
66. mta2 ENSDARG00000013031 2932 1.435 - 0.704 - - - 0.731 - - - metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
67. ctnnd2b ENSDARG00000003779 964 1.421 - 0.709 - 0.712 - - - - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
68. aebp2 ENSDARG00000006038 462 1.417 - - - 0.717 - 0.700 - - - AE binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2885]
69. rfc5 ENSDARG00000035634 974 1.417 - 0.713 - - - 0.704 - - - replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1]
70. snrpa ENSDARG00000018890 4593 1.412 - - - 0.709 - - 0.703 - - small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841]
71. smn1 ENSDARG00000018494 1024 0.991 - - - - 0.991 - - - - survival of motor neuron 1, telomeric [Source:ZFIN;Acc:ZDB-GENE-990715-16]
72. SENP1 SENP1 1122 0.99 - - - - 0.990 - - - -
73. toporsb ENSDARG00000105028 1898 0.989 - - - - 0.989 - - - - topoisomerase I binding, arginine/serine-rich b [Source:ZFIN;Acc:ZDB-GENE-110728-3]
74. dsc2l ENSDARG00000039677 2747 0.989 - - 0.989 - - - - - - desmocollin 2 like [Source:ZFIN;Acc:ZDB-GENE-031116-55]
75. larp7 ENSDARG00000017315 1194 0.988 - - - - 0.988 - - - - La ribonucleoprotein domain family, member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-6896]
76. lin54 ENSDARG00000063194 2583 0.988 - - - - 0.988 - - - - lin-54 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-060929-440]
77. cuedc2 ENSDARG00000039365 484 0.988 - - - - 0.988 - - - - CUE domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6283]
78. tmem88a ENSDARG00000056920 536 0.988 - - - - 0.988 - - - - transmembrane protein 88 a [Source:ZFIN;Acc:ZDB-GENE-040426-1808]
79. FOXL2 239 0.987 - - - - 0.987 - - - - forkhead box L2, transcript variant X1
80. gorab ENSDARG00000042031 483 0.987 - - - - 0.987 - - - - golgin, rab6-interacting [Source:ZFIN;Acc:ZDB-GENE-040426-1384]
81. pip5k1bb ENSDARG00000006508 2812 0.987 - - - - 0.987 - - - - phosphatidylinositol-4-phosphate 5-kinase, type I, beta b [Source:ZFIN;Acc:ZDB-GENE-040912-141]
82. ccdc28b ENSDARG00000011222 528 0.987 - - - - 0.987 - - - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
83. ccr10 ENSDARG00000040643 255 0.987 - - - - 0.987 - - - - chemokine (C-C motif) receptor 10 [Source:ZFIN;Acc:ZDB-GENE-040718-424]
84. msh2 ENSDARG00000018022, ENSDARG00000115185 1301 0.987 - - - - 0.987 - - - - mutS homolog 2 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-040426-2932]
85. ercc6 ENSDARG00000075612 1175 0.987 - - - - 0.987 - - - - excision repair cross-complementation group 6 [Source:ZFIN;Acc:ZDB-GENE-070228-1]
86. atp2a2a ENSDARG00000029439 940 0.987 - - - - 0.987 - - - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a [Source:ZFIN;Acc:ZDB-GENE-040426-702]
87. katnbl1 ENSDARG00000042522 1086 0.987 - - - - 0.987 - - - - katanin p80 subunit B-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4155]
88. TUBB8P7_1 TUBB8P7_1 2722 0.986 - - - - 0.986 - - - -
89. nefma ENSDARG00000021351 790 0.986 - - - - 0.986 - - - - neurofilament, medium polypeptide a [Source:ZFIN;Acc:ZDB-GENE-050522-205]
90. myl2b ENSDARG00000053424 226 0.986 - - - - 0.986 - - - - myosin, light chain 2b, regulatory, cardiac, slow [Source:ZFIN;Acc:ZDB-GENE-060331-137]
91. BX005008.2 BX005008.2 708 0.986 - - - - 0.986 - - - -
92. ago4 ENSDARG00000100854 496 0.986 - - - - 0.986 - - - - argonaute RISC catalytic component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5357]
93. slc2a15b ENSDARG00000053269 899 0.986 - - - - 0.986 - - - - solute carrier family 2 (facilitated glucose transporter), member 15b [Source:ZFIN;Acc:ZDB-GENE-050508-1]
94. pfkpb ENSDARG00000012801 223 0.986 - - - - 0.986 - - - - phosphofructokinase, platelet b [Source:ZFIN;Acc:ZDB-GENE-070912-634]
95. fam193b ENSDARG00000102831 442 0.986 - - - - 0.986 - - - - family with sequence similarity 193, member B [Source:ZFIN;Acc:ZDB-GENE-111102-1]
96. exoc3l4 ENSDARG00000058180 923 0.985 - - - - 0.985 - - - - exocyst complex component 3-like 4 [Source:ZFIN;Acc:ZDB-GENE-081028-71]
97. FBXO33 ENSDARG00000075400 1164 0.985 - - - - 0.985 - - - - F-box protein 33 [Source:ZFIN;Acc:ZDB-GENE-100618-2]
98. MANBAL ENSDARG00000059853 636 0.985 - - - - 0.985 - - - - mannosidase beta like [Source:ZFIN;Acc:ZDB-GENE-161222-1]
99. wdr24 ENSDARG00000025507 505 0.985 - - - - 0.985 - - - - WD repeat domain 24 [Source:ZFIN;Acc:ZDB-GENE-040426-2012]
100. lrch2 ENSDARG00000075580, ENSDARG00000116418 255 0.985 - - - - 0.985 - - - - leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-080114-1]

There are 1254 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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