Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rd3

Gene Name Gene ID Reads Annotation
rd3 ENSDARG00000031600 1085 retinal degeneration 3, GUCY2D regulator [Source:ZFIN;Acc:ZDB-GENE-040724-103]










Genes with expression patterns similar to rd3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rd3 ENSDARG00000031600 1085 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 retinal degeneration 3, GUCY2D regulator [Source:ZFIN;Acc:ZDB-GENE-040724-103]
2. gdf6b ENSDARG00000005510 106 2.719 - 0.891 - 0.910 - - 0.918 - - growth differentiation factor 6b [Source:ZFIN;Acc:ZDB-GENE-980526-442]
3. gbx1 ENSDARG00000071418 871 2.414 - 0.846 - 0.798 - - 0.770 - - gastrulation brain homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-020117-2]
4. thsd7ba ENSDARG00000095022 231 2.405 0.889 0.804 - - - - 0.712 - - thrombospondin, type I, domain containing 7Ba [Source:ZFIN;Acc:ZDB-GENE-070621-2]
5. Mar-09 Mar-09 126 2.342 - 0.704 - - - 0.837 0.801 - -
6. eml1 ENSDARG00000042840 569 2.271 0.720 0.825 - - - - 0.726 - - echinoderm microtubule associated protein like 1 [Source:ZFIN;Acc:ZDB-GENE-060929-156]
7. calb2a ENSDARG00000041062, ENSDARG00000110220 459 2.253 0.775 0.704 - - - - 0.774 - - calbindin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1677]
8. BTBD17 BTBD17 53 2.134 - 0.704 - - 0.705 - 0.725 - -
9. si:dkey-156m18.1 si:dkey-156m18.1 13 1.809 0.863 0.946 - - - - - - -
10. lrrc4bb ENSDARG00000014792 47 1.806 0.863 0.943 - - - - - - - leucine rich repeat containing 4Bb [Source:ZFIN;Acc:ZDB-GENE-091116-44]
11. ostf1_1 ENSDARG00000091555, ENSDARG00000114550 75 1.787 0.876 - - 0.911 - - - - - osteoclast stimulating factor 1 [Source:ZFIN;Acc:ZDB-GENE-040625-157]
12. PKHD1L1 ENSDARG00000091116 39 1.767 - - - 0.910 - 0.857 - - - polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-475]
13. lrrc4.1 ENSDARG00000069402 323 1.754 - 1.000 - - - - 0.754 - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
14. zgc:173702 ENSDARG00000110229 411 1.754 - 0.827 - - - - 0.927 - - zgc:173702 [Source:ZFIN;Acc:ZDB-GENE-080208-3]
15. POLR2M ENSDARG00000074968, ENSDARG00000113507 137 1.75 0.772 - - - - - 0.978 - - RNA polymerase II subunit M [Source:ZFIN;Acc:ZDB-GENE-160728-95]
16. slc32a1 ENSDARG00000059775 1092 1.745 - 0.986 - - - - 0.759 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
17. zgc:194621 ENSDARG00000074696 85 1.724 - 0.912 - 0.812 - - - - - zgc:194621 [Source:ZFIN;Acc:ZDB-GENE-081022-130]
18. IGLON5 ENSDARG00000022176 1353 1.709 - - - - - 0.725 - - 0.984 IgLON family member 5 [Source:HGNC Symbol;Acc:HGNC:34550]
19. PPP2R5B ENSDARG00000054931 213 1.704 - - - 0.881 - - 0.823 - - protein phosphatase 2, regulatory subunit B', beta [Source:ZFIN;Acc:ZDB-GENE-101208-1]
20. vsnl1a ENSDARG00000023228 1584 1.696 - 0.944 - - - - 0.752 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
21. si:ch1073-127d16.1 ENSDARG00000087674 105 1.692 0.837 0.855 - - - - - - - si:ch1073-127d16.1 [Source:ZFIN;Acc:ZDB-GENE-120214-30]
22. fstl5 ENSDARG00000040198 213 1.691 - 0.704 - - - - 0.987 - - follistatin-like 5 [Source:ZFIN;Acc:ZDB-GENE-070127-1]
23. GALNTL6 ENSDARG00000040048 33 1.689 - - - - 0.901 0.788 - - - polypeptide N-acetylgalactosaminyltransferase like 6 [Source:HGNC Symbol;Acc:HGNC:33844]
24. mir15a-1 36 1.684 - 0.785 - - 0.899 - - - - microRNA 15a-1
25. pcdh1gc5 ENSDARG00000104826 10052 1.673 - - - - - - 0.745 - 0.928 protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
26. sprb ENSDARG00000058553 1694 1.672 0.753 0.919 - - - - - - - sepiapterin reductase b [Source:ZFIN;Acc:ZDB-GENE-070719-1]
27. si:ch211-263m18.4 ENSDARG00000093353 27 1.672 0.968 0.704 - - - - - - - si:ch211-263m18.4 [Source:ZFIN;Acc:ZDB-GENE-030131-5341]
28. CABZ01029822.1 ENSDARG00000086931 1654 1.668 - 0.968 - - - 0.700 - - - uncharacterized LOC100004582 [Source:NCBI gene;Acc:100004582]
29. SV2B SV2B 208 1.663 - 0.846 - - - - 0.817 - -
30. cadpsb ENSDARG00000070567 458 1.655 - 0.946 - - - - 0.709 - - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
31. nell2b ENSDARG00000062797 854 1.65 - 0.891 - - - - 0.759 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
32. sall3b ENSDARG00000057586 982 1.645 - 0.859 - - - - 0.786 - - spalt-like transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9140]
33. amph ENSDARG00000007663 599 1.645 - 0.846 - - - - 0.799 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
34. PDZD4 ENSDARG00000090564 131 1.64 - - - - - 0.752 0.888 - - PDZ domain containing 4 [Source:HGNC Symbol;Acc:HGNC:21167]
35. pcsk1nl ENSDARG00000076170 1232 1.64 - 0.881 - - - - 0.759 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
36. dpysl5a ENSDARG00000011141 1827 1.64 - 0.884 - - - - 0.756 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
37. syt13 ENSDARG00000012306 298 1.638 - 0.765 - - - - 0.873 - - synaptotagmin XIII [Source:ZFIN;Acc:ZDB-GENE-050417-135]
38. SNAP91 ENSDARG00000098809 556 1.638 - 0.851 - - - - 0.787 - - synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
39. cln8 ENSDARG00000075525, ENSDARG00000113042 601 1.636 - - - 0.891 - 0.745 - - - CLN8, transmembrane ER and ERGIC protein [Source:ZFIN;Acc:ZDB-GENE-060906-3]
40. snap25a ENSDARG00000020609 4537 1.635 - 0.853 - - - - 0.782 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
41. stx1b ENSDARG00000000503 2724 1.629 - 0.852 - - - - 0.777 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
42. TUSC5 TUSC5 1436 1.627 - 0.871 - - - - 0.756 - -
43. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 1.621 - 0.800 - - - - 0.821 - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
44. FGFBP3 FGFBP3 993 1.62 0.863 - - - - - 0.757 - -
45. sv2bb ENSDARG00000060711 196 1.617 - 0.867 - - - - 0.750 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
46. cacna1g ENSDARG00000089913 19 1.612 - - - - 0.887 - 0.725 - - calcium channel, voltage-dependent, T type, alpha 1G subunit [Source:ZFIN;Acc:ZDB-GENE-090514-2]
47. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.609 0.863 - - - - - 0.746 - - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
48. pappa2 ENSDARG00000076020 89 1.608 - 0.704 - 0.904 - - - - - pappalysin 2 [Source:ZFIN;Acc:ZDB-GENE-070912-525]
49. GRM8_1 GRM8_1 85 1.603 0.863 - - - - - 0.740 - -
50. scn2b ENSDARG00000101713 796 1.601 - 0.846 - - - - 0.755 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
51. MAP6 MAP6 643 1.598 - 0.864 - - - - 0.734 - -
52. ankk1 ENSDARG00000056921 119 1.594 - - - 0.892 - 0.702 - - - ankyrin repeat and kinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-071015-4]
53. si:ch211-132b12.7 ENSDARG00000068374 30 1.588 0.863 - - - - - 0.725 - - si:ch211-132b12.7 [Source:ZFIN;Acc:ZDB-GENE-050419-250]
54. si:dkey-122c11.4 si:dkey-122c11.4 13 1.588 0.863 - - - - - 0.725 - -
55. ptchd4 ENSDARG00000008249 17 1.588 0.863 - - - - - 0.725 - - patched domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041001-178]
56. scd ENSDARG00000033662 146 1.588 0.863 - - - - - 0.725 - - stearoyl-CoA desaturase (delta-9-desaturase) [Source:ZFIN;Acc:ZDB-GENE-031106-3]
57. CR936540.2 CR936540.2 4 1.588 0.863 - - - - - 0.725 - -
58. ftr14l ENSDARG00000078254 2 1.588 0.863 - - - - - 0.725 - - finTRIM family, member 14-like [Source:ZFIN;Acc:ZDB-GENE-090312-123]
59. GPR22_1 GPR22_1 28 1.588 0.863 - - - - - 0.725 - -
60. tecrl2 tecrl2 11 1.588 0.863 - - - - - 0.725 - -
61. gng3 ENSDARG00000009553 2530 1.587 - 0.828 - - - - 0.759 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
62. FAM171A2 FAM171A2 707 1.584 - 0.827 - - - - 0.757 - -
63. GJD2 GJD2 1351 1.584 - 0.835 - - - - 0.749 - -
64. MPPED1 ENSDARG00000088181 117 1.577 0.863 - - 0.714 - - - - - metallophosphoesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-111104-1]
65. si:ch73-21g5.7 ENSDARG00000093156 9412 1.568 - 0.851 - - - - 0.717 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
66. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 1.567 - 0.785 - - - - 0.782 - - visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
67. ciz1a ENSDARG00000089781 20 1.567 0.863 0.704 - - - - - - - cdkn1a interacting zinc finger protein 1a [Source:ZFIN;Acc:ZDB-GENE-100922-222]
68. zdhhc23b ENSDARG00000003899, ENSDARG00000116894 31 1.567 0.863 0.704 - - - - - - - zinc finger, DHHC-type containing 23b [Source:ZFIN;Acc:ZDB-GENE-040808-13]
69. CR318593.1_1 CR318593.1_1 8 1.567 0.863 0.704 - - - - - - -
70. scn8aa ENSDARG00000005775 792 1.566 - 0.863 - - - - 0.703 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
71. CU179656.1 ENSDARG00000107086 270 1.566 - 0.845 - - - 0.721 - - -
72. stmn2a ENSDARG00000033234 2272 1.56 - 0.814 - - - - 0.746 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
73. si:dkey-106c17.3 93 1.558 - - - 0.834 - 0.724 - - - si:dkey-106c17.3
74. cntn4 ENSDARG00000098161, ENSDARG00000109387 437 1.555 - 0.785 - - - - 0.770 - - contactin 4 [Source:ZFIN;Acc:ZDB-GENE-060929-776]
75. SLC5A7 SLC5A7 453 1.554 - 0.776 - - - - 0.778 - -
76. mapk12b ENSDARG00000006409 2246 1.55 - 0.825 - - - - 0.725 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
77. mkks ENSDARG00000016139 70 1.549 0.824 - - - - - 0.725 - - McKusick-Kaufman syndrome [Source:ZFIN;Acc:ZDB-GENE-040426-757]
78. si:ch211-120c15.3 ENSDARG00000101807 19 1.547 0.822 - - - - - 0.725 - - si:ch211-120c15.3 [Source:ZFIN;Acc:ZDB-GENE-110913-99]
79. KLF8 ENSDARG00000060661 219 1.547 - - - - 0.822 - 0.725 - - Kruppel-like factor 8 [Source:ZFIN;Acc:ZDB-GENE-070424-152]
80. LRRN3 LRRN3 261 1.542 - 0.788 - - - - 0.754 - -
81. cnrip1a ENSDARG00000091683 1491 1.537 - 0.812 - - - - 0.725 - - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
82. rbfox3 rbfox3 1443 1.534 - 0.790 - - - - 0.744 - -
83. TUBB8P7_1 TUBB8P7_1 2722 1.532 - 0.772 - - - - 0.760 - -
84. ABHD15 ABHD15 86 1.531 0.732 - - - 0.799 - - - -
85. sox21b ENSDARG00000008540 1460 1.531 - 0.820 - - - - 0.711 - - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
86. phactr3a ENSDARG00000058243 150 1.53 0.824 - - - - - 0.706 - - phosphatase and actin regulator 3a [Source:ZFIN;Acc:ZDB-GENE-080220-4]
87. si:dkey-121a11.3 ENSDARG00000071458 118 1.526 0.716 0.810 - - - - - - - si:dkey-121a11.3 [Source:ZFIN;Acc:ZDB-GENE-050208-417]
88. SKOR2 SKOR2 1041 1.524 - 0.755 - - - - 0.769 - -
89. cers6 ENSDARG00000053583 247 1.519 - 0.786 - - - - 0.733 - - ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
90. upf3a ENSDARG00000069297, ENSDARG00000111067 196 1.519 - 0.786 - - - - 0.733 - - UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
91. gpr22 gpr22 115 1.518 - 0.704 - - - - 0.814 - -
92. ptpn5 ENSDARG00000074866 548 1.517 0.781 - - - - - 0.736 - - protein tyrosine phosphatase, non-receptor type 5 [Source:ZFIN;Acc:ZDB-GENE-101028-3]
93. nadl1.1 1200 1.517 - 0.776 - - - - 0.741 - - neural adhesion molecule L1.1, transcript variant X1
94. itm2ca ENSDARG00000043448 1265 1.515 - 0.749 - - - - 0.766 - - integral membrane protein 2Ca [Source:ZFIN;Acc:ZDB-GENE-040718-284]
95. mettl21d mettl21d 94 1.513 - - - 0.808 - - 0.705 - -
96. csnk1e ENSDARG00000045150, ENSDARG00000112948 288 1.508 - - - - - 0.762 0.746 - - casein kinase 1, epsilon [Source:ZFIN;Acc:ZDB-GENE-030131-7873]
97. tyro3 ENSDARG00000005356 4 1.5 - 0.704 - - - - 0.796 - - TYRO3 protein tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-990714-13]
98. thsd7a thsd7a 194 1.497 - 0.787 - - - - 0.710 - -
99. MAP1A MAP1A 847 1.496 - 0.751 - - - - 0.745 - -
100. robo2 ENSDARG00000014891, ENSDARG00000078366 23 1.493 - - - - - 0.768 0.725 - - roundabout, axon guidance receptor, homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-001019-1]

There are 1754 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA