Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rcn3

Gene Name Gene ID Reads Annotation
rcn3 ENSDARG00000037961, ENSDARG00000110075 1544 reticulocalbin 3, EF-hand calcium binding domain [Source:ZFIN;Acc:ZDB-GENE-040625-175]










Genes with expression patterns similar to rcn3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rcn3 ENSDARG00000037961, ENSDARG00000110075 1544 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 reticulocalbin 3, EF-hand calcium binding domain [Source:ZFIN;Acc:ZDB-GENE-040625-175]
2. rab22a ENSDARG00000015807, ENSDARG00000114826 1627 1.793 - 0.886 - - - - - - 0.907 RAB22A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-161]
3. uhmk1 ENSDARG00000059575 1486 1.762 - - - - - - 0.845 - 0.917 U2AF homology motif (UHM) kinase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1014]
4. hint2 ENSDARG00000100938 1053 1.758 - 0.849 - - - - - - 0.909 histidine triad nucleotide binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070410-139]
5. pou2f1b ENSDARG00000007996 2172 1.744 - 0.874 - - - - - - 0.870 POU class 2 homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2422]
6. exoc3 ENSDARG00000014582, ENSDARG00000114378, ENSDARG00000117037 1155 1.714 - 0.819 - - - - - - 0.895 exocyst complex component 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5947]
7. eprs ENSDARG00000060494 4729 1.705 - 0.833 - - - - - - 0.872 glutamyl-prolyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-638]
8. ndst2a ENSDARG00000086269 754 1.703 - 0.795 - - - - - - 0.908 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a [Source:ZFIN;Acc:ZDB-GENE-060810-182]
9. gorasp2 ENSDARG00000015126 3923 1.683 - 0.800 - - - - - - 0.883 golgi reassembly stacking protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1659]
10. mrpl15 ENSDARG00000101306 2796 1.677 - 0.780 - - - - - - 0.897 mitochondrial ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-168]
11. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.677 - - - - - - - 0.789 0.888 paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
12. rabif ENSDARG00000002690, ENSDARG00000114340 891 1.671 - 0.770 - - - - - - 0.901 RAB interacting factor [Source:ZFIN;Acc:ZDB-GENE-040718-216]
13. si:ch211-208h7.4 si:ch211-208h7.4 1334 1.662 - 0.772 - - - - - - 0.890
14. wbscr16 wbscr16 791 1.648 - 0.844 - - - - 0.804 - -
15. RSL1D1 ENSDARG00000055868, ENSDARG00000115696 3825 1.628 - 0.842 - - - - - - 0.786 ribosomal L1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-130603-67]
16. sra1 ENSDARG00000053619 2799 1.628 - 0.727 - - - - - - 0.901 steroid receptor RNA activator 1 [Source:ZFIN;Acc:ZDB-GENE-040625-6]
17. slit1a ENSDARG00000044954 3810 1.622 - 0.759 - - - - - - 0.863 slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
18. hmcn2 ENSDARG00000079327, ENSDARG00000086060 1075 1.612 - - - - - - 0.790 - 0.822 hemicentin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9765]
19. itpr3 ENSDARG00000061741, ENSDARG00000112936 707 1.612 - - - - - - 0.706 - 0.906 inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
20. nudcd2 ENSDARG00000078059, ENSDARG00000109490 2234 1.596 - 0.831 - - - - 0.765 - - NudC domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040801-49]
21. sema5a ENSDARG00000058821 333 1.588 - 0.771 - - - - 0.817 - - sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A [Source:ZFIN;Acc:ZDB-GENE-030131-8969]
22. phrf1 ENSDARG00000075252 1982 1.584 - - - - - - 0.755 - 0.829 PHD and ring finger domains 1 [Source:ZFIN;Acc:ZDB-GENE-030131-624]
23. ZC3H12A_1 ZC3H12A_1 558 1.572 - 0.768 - - - - 0.804 - -
24. fryl ENSDARG00000040001 3256 1.532 - 0.780 - - - - 0.752 - - furry homolog, like [Source:ZFIN;Acc:ZDB-GENE-040914-58]
25. psmc2 ENSDARG00000020101 8095 1.517 - - - - - - 0.704 - 0.813 proteasome 26S subunit, ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1327]
26. CR354611.2 CR354611.2 2040 1.51 - 0.796 - - - - 0.714 - -
27. bcl7ba ENSDARG00000111877 3696 1.505 - 0.738 - - - - 0.767 - - BCL tumor suppressor 7Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2193]
28. apc ENSDARG00000058868 2605 1.496 - - - - - - 0.709 - 0.787 adenomatous polyposis coli [Source:ZFIN;Acc:ZDB-GENE-031112-7]
29. plxnb1a ENSDARG00000075821 1702 1.495 0.704 0.791 - - - - - - - plexin b1a [Source:ZFIN;Acc:ZDB-GENE-050302-63]
30. srprb ENSDARG00000030949 1670 1.487 - 0.729 - - - - 0.758 - - SRP receptor subunit beta [Source:ZFIN;Acc:ZDB-GENE-040718-311]
31. ndfip1 ENSDARG00000013979, ENSDARG00000111470, ENSDARG00000112351 2550 0.96 - - - - - - - - 0.960 Nedd4 family interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2767]
32. srebf2 ENSDARG00000063438 1982 0.955 - - - - - - - - 0.955 sterol regulatory element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-070410-8]
33. zgc:101640 733 0.954 - - - - - - - - 0.954 zgc:101640, transcript variant X2
34. frmd6 ENSDARG00000002332 2698 0.953 - - - - - - - - 0.953 FERM domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-354]
35. pof1b ENSDARG00000054060 2355 0.952 - - - - - - - - 0.952 POF1B, actin binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-4287]
36. brox ENSDARG00000013659 1334 0.952 - - - - - - - - 0.952 BRO1 domain and CAAX motif containing [Source:ZFIN;Acc:ZDB-GENE-041114-137]
37. c1qtnf5 ENSDARG00000056134 729 0.949 - - - - - - - - 0.949 C1q and TNF related 5 [Source:ZFIN;Acc:ZDB-GENE-050706-101]
38. fam107b ENSDARG00000026865, ENSDARG00000113209, ENSDARG00000116517 861 0.945 - - - - - - - - 0.945 family with sequence similarity 107, member B [Source:ZFIN;Acc:ZDB-GENE-031030-12]
39. dsc2l ENSDARG00000039677 2747 0.944 - - - - - - - - 0.944 desmocollin 2 like [Source:ZFIN;Acc:ZDB-GENE-031116-55]
40. CHORDC1 CHORDC1 544 0.939 - 0.939 - - - - - - -
41. scaf11 ENSDARG00000045885 3531 0.936 - - - - - - - - 0.936 SR-related CTD-associated factor 11 [Source:ZFIN;Acc:ZDB-GENE-041210-22]
42. zcrb1 ENSDARG00000045691 1741 0.934 - - - - - - - - 0.934 zinc finger CCHC-type and RNA binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-041210-114]
43. lnx1 ENSDARG00000043323, ENSDARG00000113875 1199 0.932 - - - - - - - - 0.932 ligand of numb-protein X 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9439]
44. tll1 ENSDARG00000037429, ENSDARG00000113847 1039 0.932 - - - - - - - - 0.932 tolloid-like 1 [Source:ZFIN;Acc:ZDB-GENE-041020-1]
45. esrp1 ENSDARG00000011245 2097 0.93 - - - - - - - - 0.930 epithelial splicing regulatory protein 1 [Source:ZFIN;Acc:ZDB-GENE-070112-1732]
46. ppm1e ENSDARG00000026499 770 0.927 - - - - - - - - 0.927 protein phosphatase, Mg2+/Mn2+ dependent, 1E [Source:ZFIN;Acc:ZDB-GENE-070326-2]
47. zgc:110130 ENSDARG00000039203 352 0.925 - - - - - - - - 0.925 zgc:110130 [Source:ZFIN;Acc:ZDB-GENE-050522-208]
48. si:dkey-193b15.6 si:dkey-193b15.6 1340 0.924 - - - - - - - - 0.924
49. si:dkey-57c15.9 si:dkey-57c15.9 665 0.923 - - - - - - - - 0.923
50. FAM114A2 ENSDARG00000079508 1226 0.922 - - - - - - - - 0.922 family with sequence similarity 114, member A2 [Source:ZFIN;Acc:ZDB-GENE-030131-6308]
51. selm 2395 0.919 - - - - - - - - 0.919 selenoprotein M
52. nudt9 ENSDARG00000087927 1148 0.919 - - - - - - - - 0.919 nudix (nucleoside diphosphate linked moiety X)-type motif 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2669]
53. MRPL18 ENSDARG00000060199, ENSDARG00000110565, ENSDARG00000112114 1364 0.918 - 0.918 - - - - - - - mitochondrial ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-061013-632]
54. ptpn23a ENSDARG00000070124 1206 0.917 - - - - - - - - 0.917 protein tyrosine phosphatase, non-receptor type 23, a [Source:ZFIN;Acc:ZDB-GENE-100921-24]
55. cpla2 cpla2 1031 0.917 - - - - - - - - 0.917
56. zgc:63587 ENSDARG00000017140 8399 0.917 - - - - - - - - 0.917 zgc:63587 [Source:ZFIN;Acc:ZDB-GENE-040426-1175]
57. cdkal1 ENSDARG00000104848 2102 0.916 - - - - - - - - 0.916 CDK5 regulatory subunit associated protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1443]
58. fkbp8 ENSDARG00000001734 1709 0.916 - - - - - - - - 0.916 FK506 binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1849]
59. rftn2 ENSDARG00000056078 1449 0.916 - - - - - - - - 0.916 raftlin family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2760]
60. BOLA3 ENSDARG00000098130 1340 0.916 - 0.916 - - - - - - - bolA family member 3 [Source:ZFIN;Acc:ZDB-GENE-040801-32]
61. klhdc4 ENSDARG00000100206, ENSDARG00000113735 2362 0.916 - - - - - - - - 0.916 kelch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-2057]
62. tbc1d22a ENSDARG00000045510 363 0.916 - - - - - - - - 0.916 TBC1 domain family, member 22a [Source:ZFIN;Acc:ZDB-GENE-041114-144]
63. pi4k2b ENSDARG00000013881 1337 0.916 - - - - - - - - 0.916 phosphatidylinositol 4-kinase type 2 beta [Source:ZFIN;Acc:ZDB-GENE-070112-990]
64. wwtr1 ENSDARG00000067719 3484 0.916 - - - - - - - - 0.916 WW domain containing transcription regulator 1 [Source:ZFIN;Acc:ZDB-GENE-051101-1]
65. cyt1 ENSDARG00000092947 1717 0.915 - - - - - - - - 0.915 type I cytokeratin, enveloping layer [Source:ZFIN;Acc:ZDB-GENE-991008-6]
66. gli2b ENSDARG00000020884 1468 0.915 - - - - - - - - 0.915 GLI family zinc finger 2b [Source:ZFIN;Acc:ZDB-GENE-050523-1]
67. tmem163a ENSDARG00000079858, ENSDARG00000116870 677 0.915 - - - - - - - - 0.915 transmembrane protein 163a [Source:ZFIN;Acc:ZDB-GENE-081104-429]
68. fastk ENSDARG00000077075 1619 0.915 - - - - - - - - 0.915 Fas-activated serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-070912-680]
69. BRK1 ENSDARG00000041974 6430 0.914 - - - - - - - - 0.914 BRICK1, SCAR/WAVE actin-nucleating complex subunit [Source:ZFIN;Acc:ZDB-GENE-040625-77]
70. znf296 ENSDARG00000077897 658 0.914 - - - - - - - - 0.914 zinc finger protein 296 [Source:ZFIN;Acc:ZDB-GENE-050419-201]
71. itpkcb ENSDARG00000067741 2370 0.913 - - - - - - - - 0.913 inositol-trisphosphate 3-kinase Cb [Source:ZFIN;Acc:ZDB-GENE-080225-27]
72. si:ch211-103e16.4 si:ch211-103e16.4 227 0.913 - - - - - - - - 0.913
73. ascc2 ENSDARG00000013058 228 0.913 - - - - - - - - 0.913 activating signal cointegrator 1 complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1223]
74. ITPA ENSDARG00000057529 493 0.913 - - - - - - - - 0.913 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) [Source:ZFIN;Acc:ZDB-GENE-070705-218]
75. zgc:112484 zgc:112484 780 0.913 - - - - - - - - 0.913
76. cul5a ENSDARG00000069742, ENSDARG00000112542, ENSDARG00000116292 955 0.913 - 0.913 - - - - - - - cullin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-5426]
77. wdr66 ENSDARG00000059855 276 0.913 - - - - - - - - 0.913 WD repeat domain 66 [Source:ZFIN;Acc:ZDB-GENE-060526-328]
78. gsg1l ENSDARG00000037390 181 0.913 - - - - - - - - 0.913 gsg1-like [Source:ZFIN;Acc:ZDB-GENE-050913-27]
79. nr1d4b ENSDARG00000059370 243 0.912 - - - - - - - - 0.912 nuclear receptor subfamily 1, group D, member 4b [Source:ZFIN;Acc:ZDB-GENE-080403-6]
80. CABZ01073417.1 CABZ01073417.1 232 0.912 - - - - - - - - 0.912
81. entpd2a.2 ENSDARG00000033953 389 0.912 - - - - - - - - 0.912 ectonucleoside triphosphate diphosphohydrolase 2a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040724-67]
82. OTOS ENSDARG00000108475 180 0.912 - - - - - - - - 0.912 otospiralin [Source:ZFIN;Acc:ZDB-GENE-120601-1]
83. s100a10a ENSDARG00000037425 237 0.912 - - - - - - - - 0.912 S100 calcium binding protein A10a [Source:ZFIN;Acc:ZDB-GENE-041010-35]
84. PPP1R21 ENSDARG00000103144 385 0.911 - - - - - - - - 0.911 protein phosphatase 1, regulatory subunit 21 [Source:ZFIN;Acc:ZDB-GENE-041114-8]
85. si:ch73-109d9.1 ENSDARG00000052019 248 0.911 - - - - - - - - 0.911 si:ch73-109d9.1 [Source:ZFIN;Acc:ZDB-GENE-110411-256]
86. CU695232.1 ENSDARG00000098286 1266 0.911 - - - - - - - - 0.911 zinc transporter ZIP9-B-like [Source:NCBI gene;Acc:571446]
87. plekhg5a ENSDARG00000025902 397 0.911 - - - - - - - - 0.911 pleckstrin homology domain containing, family G (with RhoGef domain) member 5a [Source:ZFIN;Acc:ZDB-GENE-060503-766]
88. LRRC14B ENSDARG00000060788 363 0.911 - - - - - - - - 0.911 leucine rich repeat containing 14B [Source:ZFIN;Acc:ZDB-GENE-060503-910]
89. kpna3 ENSDARG00000052641 5347 0.91 - - - - - - - - 0.910 karyopherin alpha 3 (importin alpha 4) [Source:ZFIN;Acc:ZDB-GENE-030616-541]
90. etv2 ENSDARG00000053868 715 0.91 - - - - - - - - 0.910 ets variant 2 [Source:ZFIN;Acc:ZDB-GENE-050622-14]
91. stxbp5b ENSDARG00000029234 760 0.91 - - - - - - - - 0.910 syntaxin binding protein 5b (tomosyn) [Source:ZFIN;Acc:ZDB-GENE-090821-5]
92. zgc:158343 ENSDARG00000099411, ENSDARG00000110524, ENSDARG00000110558, ENSDARG00000112808 1061 0.91 - - - - - - - - 0.910 zgc:158343 [Source:ZFIN;Acc:ZDB-GENE-061201-9]
93. LLPH ENSDARG00000055360 1456 0.91 - 0.910 - - - - - - - LLP homolog, long-term synaptic facilitation factor [Source:ZFIN;Acc:ZDB-GENE-051030-30]
94. rhogd ENSDARG00000030608, ENSDARG00000112157 599 0.91 - - - - - - - - 0.910 ras homolog gene family, member Gd [Source:ZFIN;Acc:ZDB-GENE-040426-1504]
95. smad2 ENSDARG00000006389 646 0.909 - - - - - - - - 0.909 SMAD family member 2 [Source:ZFIN;Acc:ZDB-GENE-990603-7]
96. homer3 homer3 1974 0.909 - - - - - - - - 0.909
97. SURF2 ENSDARG00000112476 592 0.909 - - - - - - - - 0.909 surfeit 2 [Source:ZFIN;Acc:ZDB-GENE-040801-86]
98. commd4 ENSDARG00000061946 3281 0.909 - - - - - - - - 0.909 COMM domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060929-600]
99. rhot1a ENSDARG00000099996 2059 0.909 - - - - - - - - 0.909 ras homolog family member T1a [Source:ZFIN;Acc:ZDB-GENE-030131-5354]
100. NGEF ENSDARG00000076179 445 0.909 - - - - - - - - 0.909 neuronal guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-130530-794]

There are 897 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA