Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rbm28

Gene Name Gene ID Reads Annotation
rbm28 ENSDARG00000025332 2685 RNA binding motif protein 28 [Source:ZFIN;Acc:ZDB-GENE-040426-960]










Genes with expression patterns similar to rbm28

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rbm28 ENSDARG00000025332 2685 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RNA binding motif protein 28 [Source:ZFIN;Acc:ZDB-GENE-040426-960]
2. fscn1a ENSDARG00000059680 3999 2.314 - 0.785 - - - 0.797 0.732 - - fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
3. CABZ01076275.1 ENSDARG00000100753 5137 1.747 - - - - 0.990 - 0.757 - - scavenger receptor class B, member 2b [Source:NCBI gene;Acc:564077]
4. grasp ENSDARG00000000588, ENSDARG00000113330 766 1.736 - - - - 0.991 0.745 - - - GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:ZFIN;Acc:ZDB-GENE-060312-30]
5. MAP4_1 MAP4_1 1153 1.732 0.743 - - - 0.989 - - - -
6. asah1a ENSDARG00000037091, ENSDARG00000112187 390 1.724 - - - - 0.992 0.732 - - - N-acylsphingosine amidohydrolase (acid ceramidase) 1a [Source:ZFIN;Acc:ZDB-GENE-041010-191]
7. rmnd5b ENSDARG00000043359 3054 1.698 - - - - 0.945 0.753 - - - required for meiotic nuclear division 5 homolog B [Source:ZFIN;Acc:ZDB-GENE-040426-1744]
8. spryd4 ENSDARG00000023309, ENSDARG00000114062 2091 1.694 0.702 - - - 0.992 - - - - SPRY domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040718-180]
9. USMG5 USMG5 10356 1.678 - 0.759 - - 0.919 - - - -
10. wdr43 ENSDARG00000077264 1992 1.636 - - - - - 0.853 0.783 - - WD repeat domain 43 [Source:ZFIN;Acc:ZDB-GENE-021231-3]
11. h2afy2_1 ENSDARG00000087897 9887 1.624 - - - - 0.916 0.708 - - - H2A histone family, member Y2 [Source:ZFIN;Acc:ZDB-GENE-050913-114]
12. mcm6 ENSDARG00000057683, ENSDARG00000113317 6591 1.61 - - - - 0.887 - - - 0.723 minichromosome maintenance complex component 6 [Source:ZFIN;Acc:ZDB-GENE-030909-6]
13. gars ENSDARG00000059070 17015 1.602 - - - - 0.896 0.706 - - - glycyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9174]
14. arid1aa ENSDARG00000101710 3644 1.594 - - - 0.704 0.890 - - - - AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
15. si:ch73-46j18.5 ENSDARG00000092467 6002 1.591 - - 0.721 - 0.870 - - - - si:ch73-46j18.5 [Source:ZFIN;Acc:ZDB-GENE-030131-7892]
16. plcg1 ENSDARG00000038442 5324 1.578 - - - - 0.865 - 0.713 - - phospholipase C, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030421-3]
17. sik2b ENSDARG00000062315 1303 1.573 - 0.814 - - - - 0.759 - - salt-inducible kinase 2b [Source:ZFIN;Acc:ZDB-GENE-071012-1]
18. pinx1 ENSDARG00000023532 4452 1.573 - 0.768 - - - 0.805 - - - PIN2 (TERF1) interacting telomerase inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-030515-2]
19. bcl9l ENSDARG00000055054 128 1.565 - - - - - 0.783 0.782 - - B cell CLL/lymphoma 9-like [Source:ZFIN;Acc:ZDB-GENE-040927-29]
20. chchd3 chchd3 4139 1.562 0.731 0.831 - - - - - - -
21. srrm1 ENSDARG00000001244 4972 1.557 - - 0.720 - 0.837 - - - - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
22. enoph1 ENSDARG00000026198, ENSDARG00000111634, ENSDARG00000114318 1305 1.545 - - - - - 0.737 0.808 - - enolase-phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-040704-73]
23. hnrpl 6412 1.544 - - 0.706 - 0.838 - - - - heterogeneous nuclear ribonucleoprotein L, transcript variant X1
24. dnajc1 ENSDARG00000001940 2848 1.543 - 0.775 - - - - 0.768 - - DnaJ (Hsp40) homolog, subfamily C, member 1 [Source:ZFIN;Acc:ZDB-GENE-061103-529]
25. edc4 ENSDARG00000062266, ENSDARG00000114070 2505 1.535 - 0.710 - - - 0.825 - - - enhancer of mRNA decapping 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5032]
26. mapk14a ENSDARG00000000857, ENSDARG00000112397 1743 1.526 0.730 - - - - 0.796 - - - mitogen-activated protein kinase 14a [Source:ZFIN;Acc:ZDB-GENE-010202-2]
27. wdr75 ENSDARG00000040730 1247 1.519 - - - - - 0.729 0.790 - - WD repeat domain 75 [Source:ZFIN;Acc:ZDB-GENE-030616-5]
28. wrap53 ENSDARG00000086150 975 1.518 - - - - - 0.767 0.751 - - WD repeat containing, antisense to TP53 [Source:ZFIN;Acc:ZDB-GENE-030131-515]
29. zgc:86598 ENSDARG00000014222 3664 1.509 - - - 0.708 - - 0.801 - - zgc:86598 [Source:ZFIN;Acc:ZDB-GENE-040625-181]
30. heatr3 ENSDARG00000036076 944 1.507 0.721 0.786 - - - - - - - HEAT repeat containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1876]
31. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 1.503 0.728 - - - - - 0.775 - - heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
32. ccdc6a ENSDARG00000043334, ENSDARG00000112924 1774 1.501 - - - - - 0.768 - 0.733 - coiled-coil domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-7848]
33. kdm6bb ENSDARG00000056929 4807 1.493 - - - - - - 0.715 - 0.778 lysine (K)-specific demethylase 6B, b [Source:ZFIN;Acc:ZDB-GENE-040724-166]
34. rbp7b ENSDARG00000070486, ENSDARG00000111858 449 1.491 - - - - - 0.703 0.788 - - retinol binding protein 7b, cellular [Source:ZFIN;Acc:ZDB-GENE-081022-134]
35. prmt5 ENSDARG00000079605, ENSDARG00000116785 4676 1.487 - - 0.748 - 0.739 - - - - protein arginine methyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-030616-585]
36. smc1al ENSDARG00000058203 8838 1.484 0.749 - - - - 0.735 - - - structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
37. rbpja ENSDARG00000003398 1309 1.477 - - - - - 0.769 0.708 - - recombination signal binding protein for immunoglobulin kappa J region a [Source:ZFIN;Acc:ZDB-GENE-031117-1]
38. plk1 ENSDARG00000058471, ENSDARG00000111745 7020 1.473 - - - - - 0.753 0.720 - - polo-like kinase 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-021115-7]
39. uqcrc2a ENSDARG00000014794 3949 1.471 - 0.710 - - - - 0.761 - - ubiquinol-cytochrome c reductase core protein 2a [Source:ZFIN;Acc:ZDB-GENE-040718-405]
40. epb41l5 ENSDARG00000032324, ENSDARG00000114579 1610 1.468 - - - - 0.742 - 0.726 - - erythrocyte membrane protein band 4.1 like 5 [Source:ZFIN;Acc:ZDB-GENE-030616-450]
41. lrrfip1b ENSDARG00000095170 293 1.458 - - - - - 0.730 0.728 - - leucine rich repeat (in FLII) interacting protein 1b [Source:ZFIN;Acc:ZDB-GENE-050208-324]
42. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 1.458 - - 0.730 - - 0.728 - - - serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
43. rab14_1 ENSDARG00000074246 481 1.456 - 0.707 - - - 0.749 - - - RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
44. znf319 znf319 3027 1.452 - - - - - 0.722 0.730 - -
45. PEG3_40 PEG3_40 186 1.445 - - - - - 0.717 0.728 - -
46. gstm gstm 4064 1.434 0.710 - - - - - 0.724 - -
47. ylpm1 ENSDARG00000043680 7676 1.415 - - 0.709 - - - 0.706 - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
48. rabif ENSDARG00000002690, ENSDARG00000114340 891 1.413 0.710 - - - - 0.703 - - - RAB interacting factor [Source:ZFIN;Acc:ZDB-GENE-040718-216]
49. cdc26 ENSDARG00000077815, ENSDARG00000115575 1460 0.996 - - - - 0.996 - - - - cell division cycle 26 homolog [Source:ZFIN;Acc:ZDB-GENE-040822-18]
50. SRR SRR 544 0.995 - - - - 0.995 - - - -
51. aclya ENSDARG00000099079 2324 0.995 - - - - 0.995 - - - - ATP citrate lyase a [Source:ZFIN;Acc:ZDB-GENE-031113-1]
52. CCDC106 CCDC106 1908 0.994 - - - - 0.994 - - - -
53. rc3h1 rc3h1 1087 0.994 - - - - 0.994 - - - -
54. pold1 ENSDARG00000027689 1148 0.994 - - - - 0.994 - - - - polymerase (DNA directed), delta 1, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-060429-1]
55. MEX3D MEX3D 293 0.993 - - - - 0.993 - - - -
56. e2f5 ENSDARG00000038812 388 0.993 - - - - 0.993 - - - - E2F transcription factor 5 [Source:ZFIN;Acc:ZDB-GENE-030828-3]
57. C7H4orf48 C7H4orf48 1455 0.993 - - - - 0.993 - - - -
58. ftsjd2 ftsjd2 2694 0.993 - - - - 0.993 - - - -
59. ZBTB22 ZBTB22 1053 0.993 - - - - 0.993 - - - -
60. d2hgdh ENSDARG00000060210 362 0.993 - - - - 0.993 - - - - D-2-hydroxyglutarate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-070112-482]
61. TIMM21 ENSDARG00000071594 722 0.993 - - - - 0.993 - - - - translocase of inner mitochondrial membrane 21 [Source:HGNC Symbol;Acc:HGNC:25010]
62. si:ch211-132g1.3 ENSDARG00000089477 769 0.993 - - - - 0.993 - - - - si:ch211-132g1.3 [Source:ZFIN;Acc:ZDB-GENE-090312-148]
63. si:ch211-223a21.1 ENSDARG00000098892 306 0.993 - - - - 0.993 - - - - si:ch211-223a21.1 [Source:ZFIN;Acc:ZDB-GENE-110913-137]
64. chd2 ENSDARG00000060687 3832 0.993 - - - - 0.993 - - - - chromodomain helicase DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-256]
65. ppm1la ENSDARG00000063218 2142 0.993 - - - - 0.993 - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1La [Source:ZFIN;Acc:ZDB-GENE-061103-118]
66. mccc1 ENSDARG00000102538, ENSDARG00000115996 2069 0.993 - - - - 0.993 - - - - methylcrotonoyl-CoA carboxylase 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-050208-450]
67. e2f7 ENSDARG00000008986 1439 0.992 - - - - 0.992 - - - - E2F transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-030131-3527]
68. rad50 ENSDARG00000038917 1105 0.992 - - - - 0.992 - - - - RAD50 homolog, double strand break repair protein [Source:ZFIN;Acc:ZDB-GENE-050506-110]
69. parp12b ENSDARG00000057974, ENSDARG00000115844 1435 0.992 - - - - 0.992 - - - - poly (ADP-ribose) polymerase family, member 12b [Source:ZFIN;Acc:ZDB-GENE-030131-2617]
70. scocb ENSDARG00000002217 1844 0.992 - - - - 0.992 - - - - short coiled-coil protein b [Source:ZFIN;Acc:ZDB-GENE-041010-41]
71. zgc:66443 ENSDARG00000057707 624 0.992 - - - - 0.992 - - - - zgc:66443 [Source:ZFIN;Acc:ZDB-GENE-040426-2945]
72. ift140 ENSDARG00000031886 573 0.992 - - - - 0.992 - - - - intraflagellar transport 140 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-040724-165]
73. lppr3a lppr3a 1294 0.992 - - - - 0.992 - - - -
74. TANC2 TANC2 1104 0.992 - - - - 0.992 - - - -
75. zfand1 ENSDARG00000009178, ENSDARG00000114617 1192 0.992 - - - - 0.992 - - - - zinc finger, AN1-type domain 1 [Source:ZFIN;Acc:ZDB-GENE-040801-269]
76. MAPRE2 ENSDARG00000099943 3041 0.992 - - - - 0.992 - - - - microtubule-associated protein, RP/EB family, member 2 [Source:ZFIN;Acc:ZDB-GENE-071004-41]
77. pmm2 ENSDARG00000037654 1783 0.992 - - - - 0.992 - - - - phosphomannomutase 2 [Source:ZFIN;Acc:ZDB-GENE-030722-6]
78. drgx ENSDARG00000069329 610 0.992 - - - - 0.992 - - - - dorsal root ganglia homeobox [Source:ZFIN;Acc:ZDB-GENE-070330-1]
79. pik3r1 ENSDARG00000038524 3615 0.992 - - - - 0.992 - - - - phosphoinositide-3-kinase, regulatory subunit 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-1280]
80. hsf2 ENSDARG00000053097 1188 0.992 - - - - 0.992 - - - - heat shock transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-011128-1]
81. sptlc2a ENSDARG00000018976 937 0.992 - - - - 0.992 - - - - serine palmitoyltransferase, long chain base subunit 2a [Source:ZFIN;Acc:ZDB-GENE-050522-23]
82. rnf185 ENSDARG00000032997 1490 0.992 - - - - 0.992 - - - - ring finger protein 185 [Source:ZFIN;Acc:ZDB-GENE-040426-1977]
83. pou2f1b ENSDARG00000007996 2172 0.991 - - - - 0.991 - - - - POU class 2 homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2422]
84. dbx2 2971 0.991 - - - - 0.991 - - - - developing brain homeobox 2
85. sdad1 ENSDARG00000105117 2819 0.991 - - - - 0.991 - - - - SDA1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-021213-1]
86. stm ENSDARG00000035694 1567 0.991 - - - - 0.991 - - - - starmaker [Source:ZFIN;Acc:ZDB-GENE-031112-4]
87. ttc14 ENSDARG00000013845 1192 0.991 - - - - 0.991 - - - - tetratricopeptide repeat domain 14 [Source:ZFIN;Acc:ZDB-GENE-050327-26]
88. cercam ENSDARG00000079049, ENSDARG00000109573 2228 0.99 - - - - 0.990 - - - - cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
89. cicb ENSDARG00000055502 1356 0.99 - - - - 0.990 - - - - capicua transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-030131-1966]
90. dgkh ENSDARG00000018716 795 0.99 - - - - 0.990 - - - - diacylglycerol kinase, eta [Source:ZFIN;Acc:ZDB-GENE-070912-328]
91. kidins220b ENSDARG00000017338 1937 0.99 - - - - 0.990 - - - - kinase D-interacting substrate 220b [Source:ZFIN;Acc:ZDB-GENE-030131-7824]
92. acvr1b acvr1b 2963 0.99 - - - - 0.990 - - - -
93. rhot1a ENSDARG00000099996 2059 0.99 - - - - 0.990 - - - - ras homolog family member T1a [Source:ZFIN;Acc:ZDB-GENE-030131-5354]
94. luc7l3 ENSDARG00000014366 4416 0.99 - - - - 0.990 - - - - LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
95. desi2 ENSDARG00000004460 1593 0.99 - - - - 0.990 - - - - desumoylating isopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-040801-39]
96. mpp6b ENSDARG00000029761 2142 0.989 - - - - 0.989 - - - - membrane protein, palmitoylated 6b (MAGUK p55 subfamily member 6) [Source:ZFIN;Acc:ZDB-GENE-040426-775]
97. MRPL51 ENSDARG00000041340, ENSDARG00000113440 1544 0.989 - - - - 0.989 - - - - mitochondrial ribosomal protein L51 [Source:ZFIN;Acc:ZDB-GENE-050320-40]
98. anapc10 ENSDARG00000090152 1406 0.989 - - - - 0.989 - - - - anaphase promoting complex subunit 10 [Source:ZFIN;Acc:ZDB-GENE-060224-2]
99. slc35d2 ENSDARG00000089837 1606 0.989 - - - - 0.989 - - - - solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2 [Source:ZFIN;Acc:ZDB-GENE-080125-1]
100. cdk6 ENSDARG00000070228 1778 0.988 - - - - 0.988 - - - - cyclin-dependent kinase 6 [Source:ZFIN;Acc:ZDB-GENE-060503-786]

There are 966 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA