Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for raraa

Gene Name Gene ID Reads Annotation
raraa ENSDARG00000056783 1404 retinoic acid receptor, alpha a [Source:ZFIN;Acc:ZDB-GENE-980526-284]










Genes with expression patterns similar to raraa

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. raraa ENSDARG00000056783 1404 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 retinoic acid receptor, alpha a [Source:ZFIN;Acc:ZDB-GENE-980526-284]
2. rock2a ENSDARG00000017500 1277 2.287 - 0.739 - - - 0.815 0.733 - - rho-associated, coiled-coil containing protein kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030115-3]
3. itih2 ENSDARG00000045516 1893 2.218 - 0.718 - - - 0.771 0.729 - - inter-alpha-trypsin inhibitor heavy chain 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1942]
4. gys2 ENSDARG00000004904 212 1.642 0.842 - - - - 0.800 - - - glycogen synthase 2 [Source:ZFIN;Acc:ZDB-GENE-030826-31]
5. igfbp2b ENSDARG00000031422 679 1.634 0.770 - - - - - 0.864 - - insulin-like growth factor binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-090107-3]
6. rps6ka3a ENSDARG00000035556, ENSDARG00000116641 3608 1.629 - 0.736 - - - - 0.893 - - ribosomal protein S6 kinase a, polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-030219-119]
7. suclg2 ENSDARG00000044914 7950 1.619 0.726 - - - - - 0.893 - - succinate-CoA ligase, GDP-forming, beta subunit [Source:ZFIN;Acc:ZDB-GENE-030114-3]
8. hoga1 ENSDARG00000018944 800 1.615 - 0.822 - - - - 0.793 - - 4-hydroxy-2-oxoglutarate aldolase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2242]
9. SZT2 252 1.613 - - - - - 0.707 0.906 - - seizure threshold 2 homolog (mouse)
10. col12a1a ENSDARG00000078322 1833 1.611 - 0.780 - - - - 0.831 - - collagen, type XII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090728-1]
11. ugt1b4 ENSDARG00000097024 1848 1.603 - 0.832 - - - - 0.771 - - UDP glucuronosyltransferase 1 family, polypeptide B4 [Source:ZFIN;Acc:ZDB-GENE-080227-13]
12. gmfb ENSDARG00000028327 6522 1.602 - - - - - 0.833 0.769 - - glia maturation factor, beta [Source:ZFIN;Acc:ZDB-GENE-040426-2114]
13. lgals2b ENSDARG00000038153 2196 1.597 - - - - - 0.706 0.891 - - lectin, galactoside-binding, soluble, 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1590]
14. zgc:153952 739 1.594 - 0.708 - - - 0.886 - - - zgc:153952, transcript variant X1
15. CLEC19A ENSDARG00000113127, ENSDARG00000115545 486 1.589 - 0.804 - 0.785 - - - - - C-type lectin domain containing 19A [Source:ZFIN;Acc:ZDB-GENE-080917-46]
16. zgc:152830 ENSDARG00000079932 12194 1.58 - - - - - 0.777 0.803 - - zgc:152830 [Source:ZFIN;Acc:ZDB-GENE-090312-55]
17. gnmt ENSDARG00000006840 2422 1.566 - - - - - 0.747 0.819 - - glycine N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-040227-1]
18. creb3l3 creb3l3 1981 1.564 0.791 - - - - - 0.773 - -
19. dpydb ENSDARG00000010267 831 1.564 - 0.742 - - - - 0.822 - - dihydropyrimidine dehydrogenase b [Source:ZFIN;Acc:ZDB-GENE-040426-2459]
20. pdlim1 ENSDARG00000019845 5765 1.56 - - - - - 0.727 0.833 - - PDZ and LIM domain 1 (elfin) [Source:ZFIN;Acc:ZDB-GENE-030131-5227]
21. rab5b ENSDARG00000016059, ENSDARG00000114966 1252 1.557 - 0.838 - - - - 0.719 - - RAB5B, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040426-2593]
22. zgc:173961 zgc:173961 1540 1.551 0.839 - - 0.712 - - - - -
23. clcn7 ENSDARG00000019556 1410 1.546 0.749 0.797 - - - - - - - chloride channel 7 [Source:ZFIN;Acc:ZDB-GENE-061103-196]
24. VMO1_1 VMO1_1 828 1.54 - - - - - 0.748 0.792 - -
25. itga5 ENSDARG00000006353 1876 1.54 0.758 0.782 - - - - - - - integrin, alpha 5 (fibronectin receptor, alpha polypeptide) [Source:ZFIN;Acc:ZDB-GENE-031116-52]
26. cers1 ENSDARG00000063412 590 1.536 - - - - - 0.721 0.815 - - ceramide synthase 1 [Source:ZFIN;Acc:ZDB-GENE-050208-406]
27. zgc:158374 zgc:158374 2227 1.534 - - - 0.748 - 0.786 - - -
28. gata5 ENSDARG00000017821 1146 1.532 - - - - - - 0.812 - 0.720 GATA binding protein 5 [Source:ZFIN;Acc:ZDB-GENE-980526-340]
29. elmod2 ENSDARG00000101669 3101 1.53 - 0.787 - - - - 0.743 - - ELMO/CED-12 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060824-2]
30. si:ch211-209n20.57 si:ch211-209n20.57 1188 1.527 - 0.819 - - - 0.708 - - -
31. pim2 ENSDARG00000059001 1893 1.524 0.789 - - - - 0.735 - - - Pim-2 proto-oncogene, serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-000831-6]
32. qpctla ENSDARG00000061691 869 1.524 - 0.756 - - - 0.768 - - - glutaminyl-peptide cyclotransferase-like a [Source:ZFIN;Acc:ZDB-GENE-030131-1441]
33. pikfyve ENSDARG00000056112 1583 1.519 - - - - - 0.722 0.797 - - phosphoinositide kinase, FYVE finger containing [Source:ZFIN;Acc:ZDB-GENE-030131-9636]
34. zgc:158309 zgc:158309 2696 1.516 - - - - - 0.749 0.767 - -
35. impad1 ENSDARG00000058114 667 1.514 - - - - - 0.736 0.778 - - inositol monophosphatase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-051127-23]
36. qsox1 ENSDARG00000039459 320 1.513 0.743 0.770 - - - - - - - quiescin Q6 sulfhydryl oxidase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7019]
37. zgc:110239 ENSDARG00000077664 7015 1.512 0.736 - - - - - 0.776 - - zgc:110239 [Source:ZFIN;Acc:ZDB-GENE-050417-107]
38. pls3 ENSDARG00000037655 5175 1.511 - 0.719 - - - - 0.792 - - plastin 3 (T isoform) [Source:ZFIN;Acc:ZDB-GENE-040718-10]
39. mogat3b ENSDARG00000003635 394 1.51 - 0.723 - - - - 0.787 - - monoacylglycerol O-acyltransferase 3b [Source:ZFIN;Acc:ZDB-GENE-110302-2]
40. mgst1 mgst1 2820 1.507 - 0.715 - - - - 0.792 - -
41. smpd2 smpd2 1792 1.505 0.770 - - - - - 0.735 - -
42. wbp1lb ENSDARG00000029751 1072 1.501 - - - - - 0.774 0.727 - - WW domain binding protein 1-like b [Source:ZFIN;Acc:ZDB-GENE-050522-112]
43. aim1b 1360 1.5 0.771 0.729 - - - - - - - crystallin beta-gamma domain containing 1b
44. golph3l ENSDARG00000036943 568 1.5 - 0.706 - - - - 0.794 - - golgi phosphoprotein 3-like [Source:ZFIN;Acc:ZDB-GENE-051113-168]
45. fdps ENSDARG00000040890 4000 1.494 - - - - - 0.731 0.763 - - farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) [Source:ZFIN;Acc:ZDB-GENE-050506-78]
46. si:ch211-105c13.3 ENSDARG00000089441 13973 1.494 - 0.729 - - - - 0.765 - - si:ch211-105c13.3 [Source:ZFIN;Acc:ZDB-GENE-030131-4483]
47. si:dkey-8k3.2 ENSDARG00000038424 285 1.489 - - - 0.737 - 0.752 - - - si:dkey-8k3.2 [Source:ZFIN;Acc:ZDB-GENE-100922-98]
48. ehd1a ENSDARG00000098853 1092 1.481 - - - - - 0.743 0.738 - - EH-domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2518]
49. slc27a2a ENSDARG00000036237 166 1.479 - 0.745 - - - - 0.734 - - solute carrier family 27 (fatty acid transporter), member 2a [Source:ZFIN;Acc:ZDB-GENE-050706-104]
50. fggy ENSDARG00000038667 535 1.475 - 0.741 - - - 0.734 - - - FGGY carbohydrate kinase domain containing [Source:ZFIN;Acc:ZDB-GENE-040426-2461]
51. zgc:153911 ENSDARG00000002509 110 1.474 0.741 0.733 - - - - - - - zgc:153911 [Source:ZFIN;Acc:ZDB-GENE-061013-174]
52. uap1 ENSDARG00000052170 1168 1.472 - 0.742 - - - - 0.730 - - UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1233]
53. tango6 ENSDARG00000034001 203 1.471 - 0.749 - - - 0.722 - - - transport and golgi organization 6 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050419-237]
54. FNIP2 FNIP2 593 1.471 - 0.741 - - - 0.730 - - -
55. mpdu1a ENSDARG00000035562, ENSDARG00000109966 1169 1.471 0.710 - - - - - 0.761 - - mannose-P-dolichol utilization defect 1a [Source:ZFIN;Acc:ZDB-GENE-040912-9]
56. arf6a ENSDARG00000101626 2959 1.465 0.728 - - - - 0.737 - - - ADP-ribosylation factor 6a [Source:ZFIN;Acc:ZDB-GENE-030131-8007]
57. ptpn4a ENSDARG00000000631, ENSDARG00000112876 626 1.465 - 0.723 - - - 0.742 - - - protein tyrosine phosphatase, non-receptor type 4a [Source:ZFIN;Acc:ZDB-GENE-030616-449]
58. cpvl ENSDARG00000056480 2115 1.462 - - - - - 0.705 0.757 - - carboxypeptidase, vitellogenic-like [Source:ZFIN;Acc:ZDB-GENE-031219-2]
59. im:7148400 im:7148400 787 1.459 - - - - - 0.744 0.715 - -
60. rbm22 ENSDARG00000010238 523 1.458 - 0.741 - - - 0.717 - - - RNA binding motif protein 22 [Source:ZFIN;Acc:ZDB-GENE-040426-2298]
61. osbpl2b ENSDARG00000013830, ENSDARG00000114103 393 1.457 0.719 - - - - 0.738 - - - oxysterol binding protein-like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-6138]
62. FP085386.1 FP085386.1 229 1.451 - 0.727 - - - 0.724 - - -
63. ptplb ptplb 6135 1.45 - - - 0.732 - - 0.718 - -
64. hoxc4a ENSDARG00000070338 1382 1.442 - - - 0.706 - - - - 0.736 homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
65. pgrmc2 ENSDARG00000030237, ENSDARG00000110406 791 1.433 0.721 0.712 - - - - - - - progesterone receptor membrane component 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2102]
66. brdt ENSDARG00000102802 1067 1.427 - 0.718 - - - 0.709 - - - bromodomain, testis-specific [Source:ZFIN;Acc:ZDB-GENE-030131-5928]
67. C17H2orf43 C17H2orf43 379 1.424 - 0.707 - - - - 0.717 - -
68. si:dkey-52k20.13 si:dkey-52k20.13 428 1.424 - 0.721 - - - 0.703 - - -
69. CABZ01045212.1 ENSDARG00000087525 1460 1.423 - - - - - - 0.718 0.705 - major facilitator superfamily domain-containing protein 8-like [Source:NCBI gene;Acc:564731]
70. ociad2 ENSDARG00000052336 102 1.423 - - - 0.720 - - - - 0.703 OCIA domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-041014-253]
71. hp_1 ENSDARG00000051890, ENSDARG00000095807 1049 1.422 - - - - - 0.722 0.700 - - haptoglobin [Source:ZFIN;Acc:ZDB-GENE-030131-1259]
72. zgc:77651 zgc:77651 615 1.417 - - - - - 0.705 0.712 - -
73. arrdc3a ENSDARG00000052690 2280 0.91 - 0.910 - - - - - - - arrestin domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2913]
74. zgc:77158 ENSDARG00000013784 634 0.902 - - - - - 0.902 - - - zgc:77158 [Source:ZFIN;Acc:ZDB-GENE-040426-1799]
75. dynll2b ENSDARG00000005172 935 0.9 - 0.900 - - - - - - - dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:ZDB-GENE-050320-132]
76. mst1 ENSDARG00000103308 581 0.893 - - - - - - 0.893 - - macrophage stimulating 1 [Source:ZFIN;Acc:ZDB-GENE-020806-3]
77. fam132a fam132a 498 0.892 - 0.892 - - - - - - -
78. gdpd1 ENSDARG00000017261, ENSDARG00000111194 2853 0.888 - - - - - - 0.888 - - glycerophosphodiester phosphodiesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040822-22]
79. slc33a1 ENSDARG00000020085 899 0.888 - - - - - 0.888 - - - solute carrier family 33 (acetyl-CoA transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1241]
80. epha4l ENSDARG00000010767 1184 0.885 - 0.885 - - - - - - - eph receptor A4, like [Source:ZFIN;Acc:ZDB-GENE-990415-61]
81. cited4b ENSDARG00000101009, ENSDARG00000114241 3632 0.884 - 0.884 - - - - - - - Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4b [Source:ZFIN;Acc:ZDB-GENE-030425-5]
82. mtdha ENSDARG00000014159, ENSDARG00000115030 9903 0.882 - - - - - - 0.882 - - metadherin a [Source:ZFIN;Acc:ZDB-GENE-030616-615]
83. ndfip1 ENSDARG00000013979, ENSDARG00000111470, ENSDARG00000112351 2550 0.882 - - - - - 0.882 - - - Nedd4 family interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2767]
84. rhbdf1 rhbdf1 1608 0.879 - - - - - - 0.879 - -
85. mapk12a ENSDARG00000042021 1573 0.878 - - - - - 0.878 - - - mitogen-activated protein kinase 12a [Source:ZFIN;Acc:ZDB-GENE-990415-257]
86. wdr41 ENSDARG00000009851 420 0.878 - 0.878 - - - - - - - WD repeat domain 41 [Source:ZFIN;Acc:ZDB-GENE-050706-152]
87. bcas3 ENSDARG00000090764, ENSDARG00000114497 601 0.873 - - - - - 0.873 - - - breast carcinoma amplified sequence 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1257]
88. acvr2aa ENSDARG00000011188 1454 0.872 - 0.872 - - - - - - - activin A receptor type 2Aa [Source:ZFIN;Acc:ZDB-GENE-980526-227]
89. sox4b ENSDARG00000098834 1634 0.871 - - - - - 0.871 - - - SRY (sex determining region Y)-box 4b [Source:ZFIN;Acc:ZDB-GENE-040426-1274]
90. lin7c ENSDARG00000027322 3083 0.87 - 0.870 - - - - - - - lin-7 homolog C (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041011-2]
91. stk11ip ENSDARG00000070122, ENSDARG00000111986 199 0.868 - - - - - 0.868 - - - serine/threonine kinase 11 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-1022]
92. ambp ENSDARG00000004296, ENSDARG00000112731 1305 0.866 - - - - - - 0.866 - - alpha-1-microglobulin/bikunin precursor [Source:ZFIN;Acc:ZDB-GENE-040426-1608]
93. irf2bp1 ENSDARG00000005468 1362 0.866 - 0.866 - - - - - - - interferon regulatory factor 2 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050420-389]
94. smpd1 ENSDARG00000076121 584 0.865 - 0.865 - - - - - - - sphingomyelin phosphodiesterase 1, acid lysosomal [Source:ZFIN;Acc:ZDB-GENE-110411-222]
95. adipor2 ENSDARG00000101849 3156 0.865 - - - - - - 0.865 - - adiponectin receptor 2 [Source:ZFIN;Acc:ZDB-GENE-041210-60]
96. jak2b ENSDARG00000018882 1141 0.864 - 0.864 - - - - - - - Janus kinase 2b [Source:ZFIN;Acc:ZDB-GENE-980526-123]
97. C3_1 C3_1 637 0.863 - - - - - - 0.863 - -
98. si:dkeyp-110e4.6 ENSDARG00000061845 1755 0.863 - 0.863 - - - - - - - si:dkeyp-110e4.6 [Source:ZFIN;Acc:ZDB-GENE-030219-75]
99. MPC2 ENSDARG00000024478 4194 0.863 - - - - - - 0.863 - - mitochondrial pyruvate carrier 2 [Source:ZFIN;Acc:ZDB-GENE-030131-330]
100. zgc:55512 zgc:55512 4436 0.862 - 0.862 - - - - - - -

There are 1076 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA