Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rapgef4

Gene Name Gene ID Reads Annotation
rapgef4 ENSDARG00000079872 142 Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]










Genes with expression patterns similar to rapgef4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rapgef4 ENSDARG00000079872 142 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
2. si:dkey-169i5.4 ENSDARG00000077862 511 1.636 - 0.759 - 0.877 - - - - - si:dkey-169i5.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8695]
3. ATAD2 ENSDARG00000076590 411 1.595 - - - 0.814 - - 0.781 - - ATPase family, AAA domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7003]
4. clybl ENSDARG00000029729 690 1.592 - - - 0.802 - - 0.790 - - citrate lyase beta like [Source:ZFIN;Acc:ZDB-GENE-030516-6]
5. CU462878.1 ENSDARG00000090072 352 1.589 - 0.722 - 0.867 - - - - - keratinocyte associated protein 3 [Source:NCBI gene;Acc:100538219]
6. parp16 ENSDARG00000018593 873 1.53 - 0.712 - 0.818 - - - - - poly (ADP-ribose) polymerase family, member 16 [Source:ZFIN;Acc:ZDB-GENE-040426-2289]
7. slc35b1 ENSDARG00000038213 465 1.495 - 0.774 - 0.721 - - - - - solute carrier family 35, member B1 [Source:ZFIN;Acc:ZDB-GENE-040912-148]
8. socs9 ENSDARG00000101985 44 1.492 - 0.769 - - - - 0.723 - - suppressor of cytokine signaling 9 [Source:ZFIN;Acc:ZDB-GENE-030131-4065]
9. rnf11b ENSDARG00000040635 242 1.466 - 0.710 - - - 0.756 - - - ring finger protein 11b [Source:ZFIN;Acc:ZDB-GENE-050913-69]
10. si:ch211-245h7.2 si:ch211-245h7.2 317 1.443 - - - 0.701 - - 0.742 - -
11. ccdc85cb ENSDARG00000079555 63 1.44 - 0.714 - - - 0.726 - - - coiled-coil domain containing 85C, b [Source:ZFIN;Acc:ZDB-GENE-040718-373]
12. fam222a ENSDARG00000090797 566 0.949 0.949 - - - - - - - - family with sequence similarity 222, member A [Source:ZFIN;Acc:ZDB-GENE-050309-42]
13. CR318603.2 ENSDARG00000105536 199 0.939 - - - 0.939 - - - - -
14. HUS1 ENSDARG00000101611 187 0.934 - - - - - - 0.934 - - HUS1 checkpoint clamp component [Source:HGNC Symbol;Acc:HGNC:5309]
15. CST7 CST7 22 0.931 - - - 0.931 - - - - -
16. cyp2k18 ENSDARG00000104593 27 0.93 - - - 0.930 - - - - - cytochrome P450, family 2, subfamily K, polypeptide 18 [Source:ZFIN;Acc:ZDB-GENE-040426-1584]
17. CR388046.3 ENSDARG00000105537 108 0.93 - - - 0.930 - - - - -
18. CABZ01064972.1 ENSDARG00000098966 199 0.929 - - - 0.929 - - - - - uncharacterized LOC100538212 [Source:NCBI gene;Acc:100538212]
19. runx3 ENSDARG00000052826 247 0.928 - - - 0.928 - - - - - runt-related transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-000605-2]
20. dus1l ENSDARG00000089260 336 0.928 - - - - - - 0.928 - - dihydrouridine synthase 1-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-1435]
21. pus3 ENSDARG00000028976 52 0.927 - - - 0.927 - - - - - pseudouridylate synthase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9433]
22. lifrb ENSDARG00000039863 102 0.927 - - - 0.927 - - - - - leukemia inhibitory factor receptor alpha b [Source:ZFIN;Acc:ZDB-GENE-080107-2]
23. si:dkeyp-69e1.8 ENSDARG00000055731 35 0.926 - - - 0.926 - - - - - si:dkeyp-69e1.8 [Source:ZFIN;Acc:ZDB-GENE-070912-676]
24. ctsl.1 ENSDARG00000003902 25 0.925 - - - 0.925 - - - - - cathepsin L.1 [Source:ZFIN;Acc:ZDB-GENE-040718-61]
25. NMUR1 NMUR1 30 0.924 - - - 0.924 - - - - -
26. ENSDARG00000032477 ENSDARG00000032477 18 0.921 - - - 0.921 - - - - -
27. got1l1 ENSDARG00000053644 49 0.92 - - - 0.920 - - - - - glutamic-oxaloacetic transaminase 1 like 1 [Source:ZFIN;Acc:ZDB-GENE-060929-556]
28. ABCD2_1 ABCD2_1 13 0.92 - - - 0.920 - - - - -
29. sec22bb ENSDARG00000100435 33 0.919 - - - 0.919 - - - - - SEC22 homolog B, vesicle trafficking protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5488]
30. FHDC1_2 FHDC1_2 133 0.918 - - - - - 0.918 - - -
31. hsd17b8 ENSDARG00000001169 243 0.918 - 0.918 - - - - - - - hydroxysteroid (17-beta) dehydrogenase 8 [Source:ZFIN;Acc:ZDB-GENE-010110-1]
32. CU694372.1 ENSDARG00000097988 105 0.918 - - - 0.918 - - - - -
33. si:ch211-106h11.3 ENSDARG00000027360 154 0.916 - - - 0.916 - - - - - si:ch211-106h11.3 [Source:ZFIN;Acc:ZDB-GENE-050208-296]
34. CABZ01025393.1 CABZ01025393.1 37 0.915 - - - 0.915 - - - - -
35. cx28.8 ENSDARG00000071042 62 0.915 - - - 0.915 - - - - - connexin 28.8 [Source:ZFIN;Acc:ZDB-GENE-050616-1]
36. fgf24 ENSDARG00000037677 242 0.914 - - - 0.914 - - - - - fibroblast growth factor 24 [Source:ZFIN;Acc:ZDB-GENE-030708-1]
37. ENKD1 ENSDARG00000043550 44 0.913 - - - 0.913 - - - - - enkurin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25246]
38. pigv ENSDARG00000101952 173 0.912 - - - 0.912 - - - - - phosphatidylinositol glycan anchor biosynthesis, class V [Source:ZFIN;Acc:ZDB-GENE-121116-1]
39. si:dkey-183n20.2 si:dkey-183n20.2 210 0.912 - - - 0.912 - - - - -
40. BEND2 BEND2 92 0.911 - - - 0.911 - - - - -
41. scin ENSDARG00000010728, ENSDARG00000111092 437 0.911 - - - 0.911 - - - - - scinderin [Source:ZFIN;Acc:ZDB-GENE-060503-6]
42. si:ch211-278j3.3 ENSDARG00000020284 478 0.91 - - - 0.910 - - - - - si:ch211-278j3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-147]
43. pdik1l ENSDARG00000056509 548 0.908 - - - 0.908 - - - - - PDLIM1 interacting kinase 1 like [Source:ZFIN;Acc:ZDB-GENE-051113-236]
44. PAOX PAOX 251 0.907 - - - 0.907 - - - - -
45. BX897726.3 BX897726.3 220 0.906 - - - 0.906 - - - - -
46. CR383676.3_1 CR383676.3_1 177 0.906 - - - 0.906 - - - - -
47. ftr64 ENSDARG00000101514 33 0.906 - - - 0.906 - - - - - finTRIM family, member 64 [Source:ZFIN;Acc:ZDB-GENE-090508-8]
48. NAALAD2 ENSDARG00000021383 704 0.906 - 0.906 - - - - - - - N-acetylated alpha-linked acidic dipeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1025]
49. tm9sf1 ENSDARG00000022970 113 0.904 - - - 0.904 - - - - - transmembrane 9 superfamily member 1 [Source:ZFIN;Acc:ZDB-GENE-040801-64]
50. srd5a3 ENSDARG00000043307 142 0.904 - - - 0.904 - - - - - steroid 5 alpha-reductase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7915]
51. ENSDARG00000092910 ENSDARG00000092910 44 0.903 - - - 0.903 - - - - -
52. CR388132.2 ENSDARG00000104041 640 0.903 - - - 0.903 - - - - -
53. rnmtl1b 116 0.903 - - - 0.903 - - - - - RNA methyltransferase like 1b
54. si:rp71-1i20.2 ENSDARG00000043198 113 0.902 - - - 0.902 - - - - - si:rp71-1i20.2 [Source:ZFIN;Acc:ZDB-GENE-040724-207]
55. cybb ENSDARG00000056615 177 0.901 - - - 0.901 - - - - - cytochrome b-245, beta polypeptide (chronic granulomatous disease) [Source:ZFIN;Acc:ZDB-GENE-040426-1380]
56. asah1a ENSDARG00000037091, ENSDARG00000112187 390 0.9 - - - 0.900 - - - - - N-acylsphingosine amidohydrolase (acid ceramidase) 1a [Source:ZFIN;Acc:ZDB-GENE-041010-191]
57. mettl21a ENSDARG00000012051 86 0.9 - - - 0.900 - - - - - methyltransferase like 21A [Source:ZFIN;Acc:ZDB-GENE-050320-145]
58. ascc2 ENSDARG00000013058 228 0.899 - - - 0.899 - - - - - activating signal cointegrator 1 complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1223]
59. toporsb ENSDARG00000105028 1898 0.899 - - - 0.899 - - - - - topoisomerase I binding, arginine/serine-rich b [Source:ZFIN;Acc:ZDB-GENE-110728-3]
60. rasl10a ENSDARG00000062314 207 0.899 - - - 0.899 - - - - - RAS-like, family 10, member A [Source:ZFIN;Acc:ZDB-GENE-060526-273]
61. nr1d4b ENSDARG00000059370 243 0.897 - - - 0.897 - - - - - nuclear receptor subfamily 1, group D, member 4b [Source:ZFIN;Acc:ZDB-GENE-080403-6]
62. adarb1a ENSDARG00000041609 476 0.897 - - - 0.897 - - - - - adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
63. C9H2orf40 C9H2orf40 212 0.897 - - - 0.897 - - - - -
64. si:ch211-93f2.1 ENSDARG00000101726, ENSDARG00000104818 708 0.897 - - - 0.897 - - - - - si:ch211-93f2.1 [Source:ZFIN;Acc:ZDB-GENE-041014-96]
65. USP54 USP54 186 0.896 - - - 0.896 - - - - -
66. timm44 ENSDARG00000104771 98 0.896 - - - - - 0.896 - - - translocase of inner mitochondrial membrane 44 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-145]
67. CABZ01074309.1 CABZ01074309.1 121 0.894 - - - 0.894 - - - - -
68. btr18 ENSDARG00000103618 39 0.893 - - - 0.893 - - - - - bloodthirsty-related gene family, member 18 [Source:ZFIN;Acc:ZDB-GENE-080213-2]
69. ing1 ENSDARG00000019116 394 0.892 - - - 0.892 - - - - - inhibitor of growth family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060421-4388]
70. zgc:162936 ENSDARG00000069957 95 0.892 - - - 0.892 - - - - - zgc:162936 [Source:ZFIN;Acc:ZDB-GENE-030131-5253]
71. slc16a12a ENSDARG00000017773 47 0.889 - - - 0.889 - - - - - solute carrier family 16, member 12a [Source:ZFIN;Acc:ZDB-GENE-080721-24]
72. batf3 ENSDARG00000042577 34 0.887 - - - 0.887 - - - - - basic leucine zipper transcription factor, ATF-like 3 [Source:ZFIN;Acc:ZDB-GENE-041014-356]
73. si:dkey-287g12.6 ENSDARG00000096808 271 0.887 - - - 0.887 - - - - - si:dkey-287g12.6 [Source:ZFIN;Acc:ZDB-GENE-130603-36]
74. GABRR1 ENSDARG00000043902 71 0.887 - - - 0.887 - - - - - gamma-aminobutyric acid (GABA) A receptor, rho 1 [Source:ZFIN;Acc:ZDB-GENE-040724-212]
75. rnf32 ENSDARG00000060035, ENSDARG00000116092 122 0.886 - - - - - 0.886 - - - ring finger protein 32 [Source:ZFIN;Acc:ZDB-GENE-061013-39]
76. IP6K1 ENSDARG00000073744 524 0.886 - - - 0.886 - - - - - inositol hexakisphosphate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-110317-2]
77. si:ch73-257c13.2 ENSDARG00000074305 197 0.883 - - - 0.883 - - - - - si:ch73-257c13.2 [Source:ZFIN;Acc:ZDB-GENE-081104-269]
78. FAM26E FAM26E 79 0.882 - - - 0.882 - - - - -
79. samd10a ENSDARG00000079978, ENSDARG00000112138 430 0.882 - - - 0.882 - - - - - sterile alpha motif domain containing 10a [Source:ZFIN;Acc:ZDB-GENE-080204-53]
80. mmp13a ENSDARG00000012395, ENSDARG00000114451 178 0.882 - - - - - - 0.882 - - matrix metallopeptidase 13a [Source:ZFIN;Acc:ZDB-GENE-031202-2]
81. C21HXorf40A C21HXorf40A 216 0.881 - - - 0.881 - - - - -
82. CC2D1A 1262 0.881 - - - 0.881 - - - - - coiled-coil and C2 domain containing 1A, transcript variant X2
83. ugt2b6 ugt2b6 111 0.88 - - - 0.880 - - - - -
84. myo18ab ENSDARG00000061862 124 0.876 - - - 0.876 - - - - - myosin XVIIIAb [Source:ZFIN;Acc:ZDB-GENE-080423-1]
85. si:ch211-286m4.1 si:ch211-286m4.1 47 0.876 - - - - - - 0.876 - -
86. dcaf5 ENSDARG00000060320 163 0.875 - - - - - 0.875 - - - ddb1 and cul4 associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-060929-808]
87. wasb ENSDARG00000026350 139 0.874 - - - - - 0.874 - - - Wiskott-Aldrich syndrome (eczema-thrombocytopenia) b [Source:ZFIN;Acc:ZDB-GENE-030131-7098]
88. noc3l ENSDARG00000002487 230 0.872 - - - 0.872 - - - - - NOC3-like DNA replication regulator [Source:ZFIN;Acc:ZDB-GENE-030131-9878]
89. pnpla2 ENSDARG00000089390 129 0.87 - - - 0.870 - - - - - patatin-like phospholipase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120913-3]
90. wdr46 ENSDARG00000095879 374 0.87 - - - 0.870 - - - - - WD repeat domain 46 [Source:ZFIN;Acc:ZDB-GENE-040426-1264]
91. si:dkey-7a20.9 si:dkey-7a20.9 154 0.868 - - - 0.868 - - - - -
92. U1_25 U1_25 283 0.866 - - - 0.866 - - - - -
93. tln2a ENSDARG00000017901, ENSDARG00000104934 222 0.865 - - - 0.865 - - - - - talin 2a [Source:ZFIN;Acc:ZDB-GENE-040724-263]
94. slc35b1_1 ENSDARG00000038213 194 0.863 - - - 0.863 - - - - - solute carrier family 35, member B1 [Source:ZFIN;Acc:ZDB-GENE-040912-148]
95. si:dkey-14d8.9 si:dkey-14d8.9 66 0.861 - - - - - - 0.861 - -
96. si:ch73-127k6.1 si:ch73-127k6.1 114 0.861 - - - 0.861 - - - - -
97. ift88 ENSDARG00000027234, ENSDARG00000113909 168 0.861 - - - 0.861 - - - - - intraflagellar transport 88 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-574]
98. elp6 ENSDARG00000060445, ENSDARG00000115612 458 0.86 - 0.860 - - - - - - - elongator acetyltransferase complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-060825-249]
99. swt1 ENSDARG00000094010 472 0.859 - - - 0.859 - - - - - SWT1 RNA endoribonuclease homolog [Source:ZFIN;Acc:ZDB-GENE-041015-373]
100. CABZ01083862.1 ENSDARG00000106989 779 0.859 - - - 0.859 - - - - - zinc finger protein 821 [Source:NCBI gene;Acc:571740]

There are 637 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA