Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rapgef3

Gene Name Gene ID Reads Annotation
rapgef3 ENSDARG00000079291 69 Rap guanine nucleotide exchange factor (GEF) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-38]










Genes with expression patterns similar to rapgef3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rapgef3 ENSDARG00000079291 69 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Rap guanine nucleotide exchange factor (GEF) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-38]
2. BX548000.1 ENSDARG00000099044 45 1.812 - - - - 0.872 - 0.940 - -
3. ficd ENSDARG00000035595 129 1.776 - 0.869 - - - - 0.907 - - FIC domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-6588]
4. cthrc1b ENSDARG00000001971 44 1.761 1.000 0.761 - - - - - - - collagen triple helix repeat containing 1b [Source:ZFIN;Acc:ZDB-GENE-050420-46]
5. CMKLR1 ENSDARG00000090890 36 1.748 - - - - - 0.815 0.933 - - chemokine-like receptor 1 [Source:ZFIN;Acc:ZDB-GENE-060526-126]
6. Mar-03 Mar-03 44 1.734 - - - - - 0.797 0.937 - -
7. ppp1r3db ENSDARG00000076248 32 1.718 0.957 0.761 - - - - - - - protein phosphatase 1, regulatory subunit 3Db [Source:ZFIN;Acc:ZDB-GENE-110201-1]
8. pacrg ENSDARG00000087556 25 1.714 0.901 - - - - 0.813 - - - PARK2 co-regulated [Source:ZFIN;Acc:ZDB-GENE-041114-100]
9. UIMC1_1 UIMC1_1 430 1.702 0.774 - - - - - 0.928 - -
10. mdm1 ENSDARG00000045675 64 1.69 - 0.794 - - 0.896 - - - - Mdm1 nuclear protein homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-041210-117]
11. rest ENSDARG00000103046 51 1.677 - 0.939 - - - 0.738 - - - RE1-silencing transcription factor [Source:ZFIN;Acc:ZDB-GENE-080415-1]
12. LRP3 ENSDARG00000008485 1401 1.622 - 0.761 - - 0.861 - - - - low density lipoprotein receptor-related protein 3 [Source:ZFIN;Acc:ZDB-GENE-080116-3]
13. kif18a ENSDARG00000008022 546 1.614 - - - - 0.750 - 0.864 - - kinesin family member 18A [Source:ZFIN;Acc:ZDB-GENE-040426-862]
14. ugt5g1 ENSDARG00000032862, ENSDARG00000111242 222 1.601 - 0.758 - - 0.843 - - - - UDP glucuronosyltransferase 5 family, polypeptide G1 [Source:ZFIN;Acc:ZDB-GENE-080305-10]
15. slc12a5b ENSDARG00000078187 329 1.558 0.797 0.761 - - - - - - - solute carrier family 12 (potassium/chloride transporter), member 5b [Source:ZFIN;Acc:ZDB-GENE-080707-1]
16. camta1a ENSDARG00000077428, ENSDARG00000116922 176 1.538 0.777 0.761 - - - - - - - calmodulin binding transcription activator 1a [Source:ZFIN;Acc:ZDB-GENE-090312-183]
17. sgms2 57 1.513 - 0.761 - - - - 0.752 - - sphingomyelin synthase 2, transcript variant X1
18. GP9 ENSDARG00000090638 53 1.492 - - 0.754 - - 0.738 - - - glycoprotein IX (platelet) [Source:ZFIN;Acc:ZDB-GENE-090313-5]
19. fam169aa ENSDARG00000059719, ENSDARG00000115913 474 1.47 - 0.721 - - - - 0.749 - - family with sequence similarity 169, member Aa [Source:ZFIN;Acc:ZDB-GENE-060825-117]
20. sepsecs ENSDARG00000033861 478 1.47 0.759 - - - - 0.711 - - - Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [Source:ZFIN;Acc:ZDB-GENE-040426-859]
21. crygs1 ENSDARG00000042992 45 1.417 0.706 - - - - 0.711 - - - crystallin, gamma S1 [Source:ZFIN;Acc:ZDB-GENE-050223-4]
22. RNF151 ENSDARG00000075046, ENSDARG00000115743 3 1 1.000 - - - - - - - - ring finger protein 151 [Source:ZFIN;Acc:ZDB-GENE-121214-234]
23. cpeb1b ENSDARG00000008454 37 1 1.000 - - - - - - - - cytoplasmic polyadenylation element binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-990927-1]
24. si:ch211-187d1.3 si:ch211-187d1.3 1 1 1.000 - - - - - - - -
25. sorbs2a ENSDARG00000003046 242 1 1.000 - - - - - - - - sorbin and SH3 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-070308-2]
26. pcdh1g18 ENSDARG00000099447 7 1 1.000 - - - - - - - - protocadherin 1 gamma 18 [Source:ZFIN;Acc:ZDB-GENE-050609-13]
27. styx ENSDARG00000057699 48 1 1.000 - - - - - - - - serine/threonine/tyrosine interacting protein [Source:ZFIN;Acc:ZDB-GENE-050522-45]
28. SLC1A7 SLC1A7 3 1 1.000 - - - - - - - -
29. CR932358.2 CR932358.2 15 1 1.000 - - - - - - - -
30. trim108 ENSDARG00000061762, ENSDARG00000114698 5 1 1.000 - - - - - - - - tripartite motif containing 108 [Source:ZFIN;Acc:ZDB-GENE-060503-670]
31. nsun5_1 ENSDARG00000043209 3 1 1.000 - - - - - - - - NOP2/Sun domain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2476]
32. cpa5 ENSDARG00000021339 61 1 1.000 - - - - - - - - carboxypeptidase A5 [Source:ZFIN;Acc:ZDB-GENE-020514-1]
33. si:ch211-237l4.6 ENSDARG00000056915 49 1 1.000 - - - - - - - - si:ch211-237l4.6 [Source:ZFIN;Acc:ZDB-GENE-040724-42]
34. zgc:174698 ENSDARG00000075731, ENSDARG00000077266, ENSDARG00000098236 24 1 1.000 - - - - - - - - zgc:174698 [Source:ZFIN;Acc:ZDB-GENE-080204-74]
35. si:ch211-235f12.5 si:ch211-235f12.5 1 1 1.000 - - - - - - - -
36. si:ch211-131e11.21 si:ch211-131e11.21 1 1 1.000 - - - - - - - -
37. cdk5r1a ENSDARG00000037916 46 1 1.000 - - - - - - - - cyclin-dependent kinase 5, regulatory subunit 1a (p35) [Source:ZFIN;Acc:ZDB-GENE-080723-17]
38. flj13639 ENSDARG00000010764 29 1 1.000 - - - - - - - - flj13639 [Source:ZFIN;Acc:ZDB-GENE-030131-8104]
39. nt5c1ba ENSDARG00000018153 31 1 1.000 - - - - - - - - 5'-nucleotidase, cytosolic IB a [Source:ZFIN;Acc:ZDB-GENE-070424-103]
40. PLEKHS1_1 PLEKHS1_1 23 1 1.000 - - - - - - - -
41. fam221a ENSDARG00000027599 1 1 1.000 - - - - - - - - family with sequence similarity 221, member A [Source:ZFIN;Acc:ZDB-GENE-050320-27]
42. PARP9 ENSDARG00000006848 34 1 1.000 - - - - - - - - poly(ADP-ribose) polymerase family member 9 [Source:ZFIN;Acc:ZDB-GENE-081104-179]
43. NPFFR1 ENSDARG00000111997 29 1 1.000 - - - - - - - - neuropeptide FF receptor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8106]
44. FP236162.1 FP236162.1 2 1 1.000 - - - - - - - -
45. foxq1a ENSDARG00000030896 121 1 1.000 - - - - - - - - forkhead box Q1a [Source:ZFIN;Acc:ZDB-GENE-070424-74]
46. si:dkey-45j10.2 si:dkey-45j10.2 5 1 1.000 - - - - - - - -
47. lhfpl2b ENSDARG00000098153 132 1 1.000 - - - - - - - - LHFPL tetraspan subfamily member 2b [Source:ZFIN;Acc:ZDB-GENE-050417-10]
48. st8sia3 ENSDARG00000045301 3 1 1.000 - - - - - - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-060228-4]
49. zgc:154040 16 1 1.000 - - - - - - - - zgc:154040
50. bmp8a ENSDARG00000035677 40 1 1.000 - - - - - - - - bone morphogenetic protein 8a [Source:ZFIN;Acc:ZDB-GENE-030912-13]
51. lingo2 lingo2 67 1 1.000 - - - - - - - -
52. atmin ENSDARG00000068601 24 1 1.000 - - - - - - - - ATM interactor [Source:ZFIN;Acc:ZDB-GENE-030616-220]
53. si:ch211-113a14.19_3 ENSDARG00000109926, ENSDARG00000111536, ENSDARG00000113481, ENSDARG00000113707, ENSDARG00000115875 31 1 1.000 - - - - - - - - si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198]
54. ccnd3 ENSDARG00000027391 1 1 1.000 - - - - - - - - cyclin D3 [Source:ZFIN;Acc:ZDB-GENE-041010-110]
55. fancg ENSDARG00000024967, ENSDARG00000113462 82 1 1.000 - - - - - - - - FA complementation group G [Source:ZFIN;Acc:ZDB-GENE-050417-103]
56. si:dkey-14d8.9 si:dkey-14d8.9 66 1 1.000 - - - - - - - -
57. si:ch1073-47b13.2 si:ch1073-47b13.2 3 1 1.000 - - - - - - - -
58. si:dkey-258p11.3 si:dkey-258p11.3 9 1 1.000 - - - - - - - -
59. CU929052.1 CU929052.1 642 1 1.000 - - - - - - - -
60. RASGRF1 ENSDARG00000073824 32 1 1.000 - - - - - - - - Ras protein specific guanine nucleotide releasing factor 1 [Source:HGNC Symbol;Acc:HGNC:9875]
61. si:dkey-14d8.7 ENSDARG00000045834 5 1 1.000 - - - - - - - - si:dkey-14d8.7 [Source:ZFIN;Acc:ZDB-GENE-041210-143]
62. NYAP2 NYAP2 7 1 1.000 - - - - - - - -
63. TENM3 ENSDARG00000005479 39 1 1.000 - - - - - - - - teneurin transmembrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-990714-19]
64. cpn1_2 ENSDARG00000005185, ENSDARG00000096728 14 1 1.000 - - - - - - - - carboxypeptidase N, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9116]
65. zgc:112234_6 ENSDARG00000099514, ENSDARG00000102806, ENSDARG00000104588, ENSDARG00000105340, ENSDARG00000105393, ENSDARG00000105414, ENSDARG00000105468, ENSDARG00000105483, ENSDARG00000105507, ENSDARG00000111934 4 1 1.000 - - - - - - - - zgc:112234 [Source:NCBI gene;Acc:554097]
66. si:dkey-254e13.13 si:dkey-254e13.13 6 1 1.000 - - - - - - - -
67. UBASH3B_1 UBASH3B_1 28 1 1.000 - - - - - - - -
68. hsf4 ENSDARG00000013251 5 1 1.000 - - - - - - - - heat shock transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-050306-18]
69. prdm1b ENSDARG00000098925 440 1 1.000 - - - - - - - - PR domain containing 1b, with ZNF domain [Source:ZFIN;Acc:ZDB-GENE-080618-2]
70. si:ch211-113a14.15 3 1 1.000 - - - - - - - - si:ch211-113a14.15
71. nudt13 ENSDARG00000057417, ENSDARG00000115835 46 1 1.000 - - - - - - - - nudix (nucleoside diphosphate linked moiety X)-type motif 13 [Source:ZFIN;Acc:ZDB-GENE-040724-60]
72. AL935174.1 ENSDARG00000109674 18 1 1.000 - - - - - - - -
73. lrrc18b ENSDARG00000076236 5 1 1.000 - - - - - - - - leucine rich repeat containing 18b [Source:ZFIN;Acc:ZDB-GENE-110315-1]
74. TRIM35 TRIM35 100 1 1.000 - - - - - - - -
75. grin2ab ENSDARG00000070543 31 1 1.000 - - - - - - - - glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b [Source:ZFIN;Acc:ZDB-GENE-070424-223]
76. C6H1orf74 C6H1orf74 53 1 1.000 - - - - - - - -
77. mir196b ENSDARG00000081346 35 1 1.000 - - - - - - - - microRNA 196b [Source:ZFIN;Acc:ZDB-MIRNAG-081212-1]
78. si:ch211-265g21.1 si:ch211-265g21.1 35 1 1.000 - - - - - - - -
79. ugt5c2 ENSDARG00000006372 11 1 1.000 - - - - - - - - UDP glucuronosyltransferase 5 family, polypeptide C2 [Source:ZFIN;Acc:ZDB-GENE-060825-206]
80. cd44a ENSDARG00000087863 4 1 1.000 - - - - - - - - CD44 molecule (Indian blood group) a [Source:ZFIN;Acc:ZDB-GENE-110429-1]
81. NHSL1 NHSL1 182 1 1.000 - - - - - - - -
82. man2a1 ENSDARG00000102200 12 1 1.000 - - - - - - - - mannosidase, alpha, class 2A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060526-31]
83. TTC9 ENSDARG00000074363 196 1 - 1.000 - - - - - - - tetratricopeptide repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20267]
84. pxmp2 ENSDARG00000003144 50 1 1.000 - - - - - - - - peroxisomal membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040912-184]
85. CD200_2 CD200_2 47 1 1.000 - - - - - - - -
86. dock11 ENSDARG00000062485 17 1 1.000 - - - - - - - - dedicator of cytokinesis 11 [Source:ZFIN;Acc:ZDB-GENE-060503-196]
87. si:dkey-113d16.9 si:dkey-113d16.9 345 1 1.000 - - - - - - - -
88. gpat2 ENSDARG00000053575 12 1 1.000 - - - - - - - - glycerol-3-phosphate acyltransferase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-050309-118]
89. ENSDARG00000093467 ENSDARG00000093467 34 1 1.000 - - - - - - - -
90. VWDE_1 VWDE_1 2 1 1.000 - - - - - - - -
91. irak3 ENSDARG00000053131 16 1 1.000 - - - - - - - - interleukin-1 receptor-associated kinase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-710]
92. tmem184b tmem184b 2 1 1.000 - - - - - - - -
93. U5_3 U5_3 3 1 1.000 - - - - - - - -
94. nfatc1 ENSDARG00000036168 16 1 1.000 - - - - - - - - nuclear factor of activated T cells 1 [Source:ZFIN;Acc:ZDB-GENE-060503-677]
95. si:ch73-7i4.1 ENSDARG00000094554 771 1 1.000 - - - - - - - - si:ch73-7i4.1 [Source:ZFIN;Acc:ZDB-GENE-100921-19]
96. wu:fe11b02_1 wu:fe11b02_1 7 1 1.000 - - - - - - - -
97. zgc:172270 ENSDARG00000003632, ENSDARG00000111414 58 1 1.000 - - - - - - - - zgc:172270 [Source:ZFIN;Acc:ZDB-GENE-080204-67]
98. CR383676.3_2 CR383676.3_2 9 1 1.000 - - - - - - - -
99. CAMK1 CAMK1 28 1 1.000 - - - - - - - -
100. gdf7 ENSDARG00000042784 36 1 1.000 - - - - - - - - growth differentiation factor 7 [Source:ZFIN;Acc:ZDB-GENE-990714-1]

There are 1037 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA