Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rapgef1b

Gene Name Gene ID Reads Annotation
rapgef1b ENSDARG00000015971 1024 Rap guanine nucleotide exchange factor (GEF) 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1001]










Genes with expression patterns similar to rapgef1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rapgef1b ENSDARG00000015971 1024 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Rap guanine nucleotide exchange factor (GEF) 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1001]
2. bdh1 ENSDARG00000059388 3390 1.55 - 0.827 - - - - 0.723 - - 3-hydroxybutyrate dehydrogenase, type 1 [Source:ZFIN;Acc:ZDB-GENE-070410-130]
3. MAD2L2_1 MAD2L2_1 705 1.506 - 0.743 - 0.763 - - - - -
4. dpp3 ENSDARG00000020676 2393 1.498 0.728 0.770 - - - - - - - dipeptidyl-peptidase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1247]
5. fbxw2 ENSDARG00000009745 618 1.47 0.750 - - - - 0.720 - - - F-box and WD repeat domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-050522-303]
6. setd8a 2549 1.468 0.710 0.758 - - - - - - - SET domain containing (lysine methyltransferase) 8a
7. ppp1r12c ENSDARG00000052423 183 1.464 0.733 0.731 - - - - - - - protein phosphatase 1, regulatory subunit 12C [Source:ZFIN;Acc:ZDB-GENE-010724-11]
8. xkrx ENSDARG00000044011 1788 1.453 - 0.726 - - - - 0.727 - - XK related X-linked [Source:ZFIN;Acc:ZDB-GENE-041114-108]
9. CU367845.1_1 CU367845.1_1 43 1.437 0.727 - - - - - - 0.710 -
10. ggnbp2 ENSDARG00000055086 1419 1.41 - 0.704 - - - - 0.706 - - gametogenetin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-060929-52]
11. ccdc82 ENSDARG00000014966 563 0.957 - - - - - - - 0.957 - coiled-coil domain containing 82 [Source:ZFIN;Acc:ZDB-GENE-030131-5749]
12. rrad ENSDARG00000052011, ENSDARG00000112434 70 0.944 - - - - - - - 0.944 - Ras-related associated with diabetes [Source:ZFIN;Acc:ZDB-GENE-030131-5607]
13. stard13b ENSDARG00000098954 700 0.929 - - - - - - - 0.929 - StAR-related lipid transfer (START) domain containing 13b [Source:ZFIN;Acc:ZDB-GENE-050506-146]
14. rps6kb1a ENSDARG00000018399 627 0.923 - - - - - - - 0.923 - ribosomal protein S6 kinase b, polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-091113-52]
15. slc25a27 ENSDARG00000042873 297 0.919 - - - - - - - 0.919 - solute carrier family 25, member 27 [Source:ZFIN;Acc:ZDB-GENE-040426-1290]
16. map4k2l map4k2l 248 0.915 - - - - - - - 0.915 -
17. hmcn2 ENSDARG00000079327, ENSDARG00000086060 1075 0.906 - 0.906 - - - - - - - hemicentin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9765]
18. ipo8 ENSDARG00000058159 610 0.888 - - - - - - - 0.888 - importin 8 [Source:ZFIN;Acc:ZDB-GENE-060503-3]
19. rngtt ENSDARG00000032261 833 0.887 - 0.887 - - - - - - - RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
20. xrn2 ENSDARG00000101900 2875 0.884 - 0.884 - - - - - - - 5'-3' exoribonuclease 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2874]
21. si:dkey-46m10.3 si:dkey-46m10.3 246 0.88 - - - - - - - 0.880 -
22. ccdc58 ENSDARG00000045351 972 0.875 - 0.875 - - - - - - - coiled-coil domain containing 58 [Source:ZFIN;Acc:ZDB-GENE-040426-1780]
23. dnajc2 ENSDARG00000070477 902 0.86 - 0.860 - - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1912]
24. cul1a ENSDARG00000019239, ENSDARG00000113068, ENSDARG00000114068 2110 0.859 - 0.859 - - - - - - - cullin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2603]
25. fam83d ENSDARG00000077883 897 0.857 - - - - - - - 0.857 - family with sequence similarity 83, member D [Source:ZFIN;Acc:ZDB-GENE-041111-264]
26. thbs3a ENSDARG00000077641 631 0.855 - 0.855 - - - - - - - thrombospondin 3a [Source:ZFIN;Acc:ZDB-GENE-020708-3]
27. boka ENSDARG00000052129 1246 0.854 - - - - - - - 0.854 - BOK, BCL2 family apoptosis regulator a [Source:ZFIN;Acc:ZDB-GENE-040801-131]
28. atf7ip ENSDARG00000069619 5495 0.853 - 0.853 - - - - - - - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
29. terfa ENSDARG00000039302 779 0.85 - - - - - - - 0.850 - telomeric repeat binding factor a [Source:ZFIN;Acc:ZDB-GENE-020419-38]
30. MDC1 ENSDARG00000086764 1851 0.849 - 0.849 - - - - - - - mediator of DNA damage checkpoint 1 [Source:ZFIN;Acc:ZDB-GENE-060810-185]
31. rev1 ENSDARG00000018296, ENSDARG00000115137 1159 0.844 - - - - - - - 0.844 - REV1, polymerase (DNA directed) [Source:ZFIN;Acc:ZDB-GENE-081105-180]
32. klf12a ENSDARG00000015312, ENSDARG00000115152 477 0.844 - - - - - - - 0.844 - Kruppel-like factor 12a [Source:ZFIN;Acc:ZDB-GENE-030131-9188]
33. dnajc9 ENSDARG00000031293, ENSDARG00000111989 4082 0.841 - 0.841 - - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 9 [Source:ZFIN;Acc:ZDB-GENE-040718-130]
34. CABZ01057907.1 CABZ01057907.1 1140 0.835 - - - 0.835 - - - - -
35. setd2 ENSDARG00000062244 808 0.833 - 0.833 - - - - - - - SET domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2140]
36. dcaf6 ENSDARG00000078311 1118 0.828 - 0.828 - - - - - - - ddb1 and cul4 associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-090206-2]
37. cs ENSDARG00000103364 833 0.827 - 0.827 - - - - - - - citrate synthase [Source:ZFIN;Acc:ZDB-GENE-030131-1058]
38. rasal2 ENSDARG00000036257 3223 0.827 - 0.827 - - - - - - - RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
39. LPHN1 LPHN1 152 0.823 - 0.823 - - - - - - -
40. fli1b ENSDARG00000040080 348 0.823 - 0.823 - - - - - - - Fli-1 proto-oncogene, ETS transcription factor b [Source:ZFIN;Acc:ZDB-GENE-031114-3]
41. sh3bp4a ENSDARG00000020000 1049 0.821 - - - 0.821 - - - - - SH3-domain binding protein 4a [Source:ZFIN;Acc:ZDB-GENE-040303-3]
42. yars ENSDARG00000035913, ENSDARG00000113430 2043 0.82 - 0.820 - - - - - - - tyrosyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030425-2]
43. CEP250 CEP250 1175 0.819 - - - - - - - 0.819 -
44. bop1 ENSDARG00000063627 643 0.819 - 0.819 - - - - - - - block of proliferation 1 [Source:ZFIN;Acc:ZDB-GENE-030219-109]
45. TNRC6C_2 TNRC6C_2 2444 0.819 - 0.819 - - - - - - -
46. si:dkey-286j15.1 ENSDARG00000040864 1718 0.817 - - - - - - 0.817 - - si:dkey-286j15.1 [Source:ZFIN;Acc:ZDB-GENE-060503-447]
47. ZFYVE1 ENSDARG00000078652 631 0.815 - - - - - 0.815 - - - zinc finger, FYVE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-131205-1]
48. si:ch73-266f23.1 ENSDARG00000095135, ENSDARG00000105728 1338 0.815 - - - - - - - 0.815 - si:ch73-266f23.1 [Source:ZFIN;Acc:ZDB-GENE-110913-180]
49. e2f7 ENSDARG00000008986 1439 0.814 - 0.814 - - - - - - - E2F transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-030131-3527]
50. eif2d ENSDARG00000012929 2624 0.814 - - - - - - - 0.814 - eukaryotic translation initiation factor 2D [Source:ZFIN;Acc:ZDB-GENE-040426-1226]
51. kpna3 ENSDARG00000052641 5347 0.813 - - - - - - 0.813 - - karyopherin alpha 3 (importin alpha 4) [Source:ZFIN;Acc:ZDB-GENE-030616-541]
52. gpx7 ENSDARG00000091511 3045 0.812 - - - - - - 0.812 - - glutathione peroxidase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-419]
53. zranb1b ENSDARG00000063190, ENSDARG00000110714 1816 0.811 - 0.811 - - - - - - - zinc finger, RAN-binding domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-061110-94]
54. pa2g4b ENSDARG00000070657 7999 0.809 - - - - - 0.809 - - - proliferation-associated 2G4, b [Source:ZFIN;Acc:ZDB-GENE-030131-2182]
55. rnf144aa ENSDARG00000020600 768 0.808 - - - - - - 0.808 - - ring finger protein 144aa [Source:ZFIN;Acc:ZDB-GENE-041001-88]
56. cd2bp2 ENSDARG00000027357, ENSDARG00000115040, ENSDARG00000115297 1808 0.807 - 0.807 - - - - - - - CD2 (cytoplasmic tail) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-925]
57. hiat1b ENSDARG00000043055 757 0.807 - 0.807 - - - - - - - hippocampus abundant transcript 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2935]
58. c7a ENSDARG00000042172 716 0.805 - - - - - - 0.805 - - complement component 7a [Source:ZFIN;Acc:ZDB-GENE-081104-392]
59. dcbld2 ENSDARG00000062177, ENSDARG00000112201 3795 0.805 - 0.805 - - - - - - - discoidin, CUB and LCCL domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1822]
60. ppp3cca ENSDARG00000014962, ENSDARG00000112030 1301 0.805 - - - - - 0.805 - - - protein phosphatase 3, catalytic subunit, gamma isozyme, a [Source:ZFIN;Acc:ZDB-GENE-030829-36]
61. pdxka ENSDARG00000088959 217 0.804 0.804 - - - - - - - - pyridoxal (pyridoxine, vitamin B6) kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-8376]
62. utp23 ENSDARG00000105012 1346 0.804 - - - 0.804 - - - - - UTP23, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-050417-353]
63. thoc6 ENSDARG00000037966, ENSDARG00000110342, ENSDARG00000116948 554 0.804 - 0.804 - - - - - - - THO complex 6 [Source:ZFIN;Acc:ZDB-GENE-041010-198]
64. zcchc9 ENSDARG00000007531 1748 0.803 - 0.803 - - - - - - - zinc finger, CCHC domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-031030-9]
65. PKP4 ENSDARG00000045331 577 0.802 - 0.802 - - - - - - - plakophilin 4 [Source:ZFIN;Acc:ZDB-GENE-120411-14]
66. rnaseh2a ENSDARG00000018891 1979 0.801 - - - - - 0.801 - - - ribonuclease H2, subunit A [Source:ZFIN;Acc:ZDB-GENE-040426-976]
67. pxn_1 pxn_1 3991 0.801 - - - - - - 0.801 - -
68. STARD5 ENSDARG00000076117 251 0.8 - - - 0.800 - - - - - StAR-related lipid transfer (START) domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-130103-4]
69. asap1a ENSDARG00000029463 1566 0.8 - - - - - - 0.800 - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a [Source:ZFIN;Acc:ZDB-GENE-070912-129]
70. ptpn23a ENSDARG00000070124 1206 0.8 - 0.800 - - - - - - - protein tyrosine phosphatase, non-receptor type 23, a [Source:ZFIN;Acc:ZDB-GENE-100921-24]
71. AEBP1 ENSDARG00000091726 1431 0.798 - - - 0.798 - - - - - AE binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2390]
72. celf1 ENSDARG00000005315 5598 0.798 - 0.798 - - - - - - - cugbp, Elav-like family member 1 [Source:ZFIN;Acc:ZDB-GENE-000501-1]
73. CR626962.1 ENSDARG00000096981 220 0.798 0.798 - - - - - - - -
74. TRIP10 TRIP10 1079 0.797 - 0.797 - - - - - - -
75. si:ch73-389k6.1 ENSDARG00000103186 296 0.797 - - - 0.797 - - - - - si:ch73-389k6.1 [Source:ZFIN;Acc:ZDB-GENE-091204-408]
76. dnajc7_1 ENSDARG00000058148 687 0.795 - 0.795 - - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2483]
77. golph3 ENSDARG00000052851, ENSDARG00000109334 2114 0.795 - - - - - - 0.795 - - golgi phosphoprotein 3 [Source:ZFIN;Acc:ZDB-GENE-041010-209]
78. ube2kb ENSDARG00000013505, ENSDARG00000114039 3968 0.795 - - - - - - 0.795 - - ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-980605-9]
79. sc:d0139 sc:d0139 233 0.792 0.792 - - - - - - - -
80. kdr ENSDARG00000017321 31 0.792 0.792 - - - - - - - - kinase insert domain receptor (a type III receptor tyrosine kinase) [Source:ZFIN;Acc:ZDB-GENE-041001-112]
81. pms2 ENSDARG00000075672, ENSDARG00000115929 248 0.792 - - - 0.792 - - - - - PMS1 homolog 2, mismatch repair system component [Source:ZFIN;Acc:ZDB-GENE-030131-686]
82. gpd1a ENSDARG00000043701 1105 0.792 - 0.792 - - - - - - - glycerol-3-phosphate dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-050417-209]
83. b3gnt5a ENSDARG00000018971 938 0.791 - - - - - - 0.791 - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5a [Source:ZFIN;Acc:ZDB-GENE-030131-8470]
84. psmd7 ENSDARG00000102417 4732 0.791 - 0.791 - - - - - - - proteasome 26S subunit, non-ATPase 7 [Source:ZFIN;Acc:ZDB-GENE-030131-5541]
85. fgfr1op2 ENSDARG00000009657 904 0.791 - 0.791 - - - - - - - FGFR1 oncogene partner 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7451]
86. MON2 ENSDARG00000099798 2359 0.791 - 0.791 - - - - - - - MON2 homolog, regulator of endosome-to-Golgi trafficking [Source:ZFIN;Acc:ZDB-GENE-030131-2712]
87. CAPN1 ENSDARG00000055338 683 0.79 - - - 0.790 - - - - - calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]
88. slc30a7 ENSDARG00000019998, ENSDARG00000112372 2967 0.788 0.788 - - - - - - - - solute carrier family 30 (zinc transporter), member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-5650]
89. ccdc124 ENSDARG00000043502 2420 0.788 - - - - - 0.788 - - - coiled-coil domain containing 124 [Source:ZFIN;Acc:ZDB-GENE-040426-1483]
90. eif2b4 ENSDARG00000014004 2213 0.787 - 0.787 - - - - - - - eukaryotic translation initiation factor 2B, subunit 4 delta [Source:ZFIN;Acc:ZDB-GENE-030131-955]
91. si:dkeyp-73a2.2 ENSDARG00000079785 313 0.787 0.787 - - - - - - - - si:dkeyp-73a2.2 [Source:NCBI gene;Acc:100307112]
92. ash1l ENSDARG00000070981 2520 0.785 - 0.785 - - - - - - - ash1 (absent, small, or homeotic)-like (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6101]
93. ptbp3 ENSDARG00000043757 6760 0.785 - - - - - - 0.785 - - polypyrimidine tract binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-091116-1]
94. tctn1 ENSDARG00000078447 330 0.784 0.784 - - - - - - - - tectonic family member 1 [Source:ZFIN;Acc:ZDB-GENE-081104-157]
95. zgc:123248 zgc:123248 288 0.784 - - - 0.784 - - - - -
96. zbtb44 ENSDARG00000061110, ENSDARG00000116194 1106 0.783 0.783 - - - - - - - - zinc finger and BTB domain containing 44 [Source:ZFIN;Acc:ZDB-GENE-060526-201]
97. srp54 ENSDARG00000098367 2301 0.783 - - - - - - 0.783 - - signal recognition particle 54 [Source:ZFIN;Acc:ZDB-GENE-040426-818]
98. fzd2 ENSDARG00000054438 585 0.783 - 0.783 - - - - - - - frizzled class receptor 2 [Source:ZFIN;Acc:ZDB-GENE-990415-224]
99. snrpb2 ENSDARG00000039424 1597 0.783 - - - - - - 0.783 - - small nuclear ribonucleoprotein polypeptide B2 [Source:ZFIN;Acc:ZDB-GENE-060616-2]
100. colgalt1 ENSDARG00000073974 1473 0.782 - - - - - - - 0.782 - collagen beta(1-O)galactosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-070720-6]

There are 427 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA