Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rapgef1a

Gene Name Gene ID Reads Annotation
rapgef1a ENSDARG00000043593 416 Rap guanine nucleotide exchange factor (GEF) 1a [Source:ZFIN;Acc:ZDB-GENE-081105-26]










Genes with expression patterns similar to rapgef1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rapgef1a ENSDARG00000043593 416 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Rap guanine nucleotide exchange factor (GEF) 1a [Source:ZFIN;Acc:ZDB-GENE-081105-26]
2. CABZ01038494.1 ENSDARG00000088258 908 2.561 0.859 - - - - 0.717 - 0.985 - modulator of smoothened a [Source:NCBI gene;Acc:100535551]
3. rpl37_1 ENSDARG00000034291, ENSDARG00000076360 365 2.525 0.876 0.789 - - - - 0.860 - - ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
4. sgsm3 ENSDARG00000019038 352 1.921 - 0.925 - - - - - 0.996 - small G protein signaling modulator 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2635]
5. agfg1b ENSDARG00000019526 472 1.894 - - 0.978 0.916 - - - - - ArfGAP with FG repeats 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1520]
6. IER2 IER2 604 1.893 - - 0.938 0.955 - - - - -
7. ARHGEF17 ENSDARG00000101644 625 1.868 - - 0.952 0.916 - - - - - Rho guanine nucleotide exchange factor 17 [Source:HGNC Symbol;Acc:HGNC:21726]
8. DVL3 1098 1.85 - - - - - 0.855 - 0.995 - dishevelled segment polarity protein 3
9. XKR7 ENSDARG00000026333 175 1.84 - - - - - 0.842 - 0.998 - XK, Kell blood group complex subunit-related family, member 7 [Source:ZFIN;Acc:ZDB-GENE-051113-336]
10. hnrnpa0l_1 ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 553 1.84 - 0.844 - - - - - 0.996 - heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
11. suco ENSDARG00000016532 1609 1.837 - - 0.845 - - - - 0.992 - SUN domain containing ossification factor [Source:ZFIN;Acc:ZDB-GENE-030131-2941]
12. BX511021.3 ENSDARG00000117414 592 1.836 - 0.911 - - - 0.925 - - -
13. plk4 ENSDARG00000004576 688 1.826 - - - - - 0.830 - 0.996 - polo-like kinase 4 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030619-14]
14. nxph2a ENSDARG00000063224 75 1.809 0.888 0.921 - - - - - - - neurexophilin 2a [Source:ZFIN;Acc:ZDB-GENE-060503-124]
15. SB:CB827 SB:CB827 245 1.807 - - - - - 0.810 - 0.997 -
16. nlk1 ENSDARG00000006566 1123 1.798 - 0.834 - - - - - 0.964 - nemo-like kinase, type 1 [Source:ZFIN;Acc:ZDB-GENE-040701-1]
17. tnika ENSDARG00000056218 728 1.794 - - - - - 0.803 - 0.991 - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
18. TEX264 TEX264 283 1.794 - - - - - 0.939 0.855 - -
19. ryk ENSDARG00000007231 1611 1.782 - - - - - 0.797 - 0.985 - receptor-like tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-070209-277]
20. lysmd3 ENSDARG00000024693 754 1.777 - - 0.964 - - - 0.813 - - LysM, putative peptidoglycan-binding, domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040625-88]
21. xkr6 xkr6 286 1.763 - - - - - 0.765 - 0.998 -
22. rasl10a ENSDARG00000062314 207 1.763 - 0.935 - - - - 0.828 - - RAS-like, family 10, member A [Source:ZFIN;Acc:ZDB-GENE-060526-273]
23. CR387996.1 ENSDARG00000097774 3037 1.762 - - - - - 0.795 - 0.967 -
24. MANEAL ENSDARG00000056450 262 1.761 - - - - - 0.766 - 0.995 - mannosidase endo-alpha like [Source:HGNC Symbol;Acc:HGNC:26452]
25. calm3a ENSDARG00000015050, ENSDARG00000100825 1817 1.757 - 0.827 0.930 - - - - - - calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
26. zgc:85910 zgc:85910 299 1.754 - - 0.974 - - 0.780 - - -
27. acin1b ENSDARG00000026842 3806 1.752 - - 0.929 - - - - 0.823 - apoptotic chromatin condensation inducer 1b [Source:ZFIN;Acc:ZDB-GENE-030826-12]
28. mfsd2ab ENSDARG00000035909, ENSDARG00000114714 1520 1.746 - - 0.952 - - 0.794 - - - major facilitator superfamily domain containing 2ab [Source:NCBI gene;Acc:445176]
29. dcakd ENSDARG00000061638 120 1.742 - 0.951 - - - 0.791 - - - dephospho-CoA kinase domain containing [Source:ZFIN;Acc:ZDB-GENE-060825-226]
30. dmtf1 ENSDARG00000025824, ENSDARG00000109819, ENSDARG00000110011 364 1.741 - - - - - 0.743 - 0.998 - cyclin D binding myb-like transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-040718-413]
31. si:ch211-194k22.8 ENSDARG00000096711 1318 1.741 - - - - - 0.774 - 0.967 - si:ch211-194k22.8 [Source:ZFIN;Acc:ZDB-GENE-030131-1820]
32. crygn2 ENSDARG00000030411 2551 1.739 - 0.928 - - - - - 0.811 - crystallin, gamma N2 [Source:ZFIN;Acc:ZDB-GENE-040801-16]
33. phc2b_1 ENSDARG00000013224 1316 1.739 - - - - - 0.793 - 0.946 - polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
34. bsk146 ENSDARG00000099069 274 1.735 - - - - - 0.738 - 0.997 - brain specific kinase 146 [Source:ZFIN;Acc:ZDB-GENE-060313-3]
35. CASK CASK 1750 1.734 - - 0.904 - - 0.830 - - -
36. plekhf1 ENSDARG00000102435, ENSDARG00000110694 314 1.733 0.815 - 0.918 - - - - - - pleckstrin homology domain containing, family F (with FYVE domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1289]
37. MON2 ENSDARG00000099798 2359 1.727 - - - - - 0.805 - 0.922 - MON2 homolog, regulator of endosome-to-Golgi trafficking [Source:ZFIN;Acc:ZDB-GENE-030131-2712]
38. phldb1a ENSDARG00000061093 1637 1.723 - - 0.877 - - 0.846 - - - pleckstrin homology-like domain, family B, member 1a [Source:ZFIN;Acc:ZDB-GENE-060526-272]
39. ogfrl1 ENSDARG00000061223 64 1.718 - 0.940 - - - - 0.778 - - opioid growth factor receptor-like 1 [Source:ZFIN;Acc:ZDB-GENE-061207-32]
40. CDCA4 ENSDARG00000042319 7918 1.716 - - - - - 0.807 - 0.909 - cell division cycle associated 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1695]
41. clock3 clock3 136 1.716 0.833 0.883 - - - - - - -
42. KIF26A KIF26A 1077 1.714 - - 0.915 - - 0.799 - - -
43. bik ENSDARG00000045549 18 1.712 - 0.910 - - - - 0.802 - - BCL2 interacting killer [Source:ZFIN;Acc:ZDB-GENE-041210-181]
44. si:ch211-207c6.6 si:ch211-207c6.6 32 1.711 0.802 0.909 - - - - - - -
45. tmub1 ENSDARG00000038787 1012 1.709 0.771 - 0.938 - - - - - - transmembrane and ubiquitin-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2504]
46. sh3bp5a ENSDARG00000100529 642 1.708 - 0.711 - - - - - 0.997 - SH3-domain binding protein 5a (BTK-associated) [Source:ZFIN;Acc:ZDB-GENE-111111-2]
47. acd ENSDARG00000078055 98 1.708 0.866 - - - - - 0.842 - - ACD, shelterin complex subunit and telomerase recruitment factor [Source:ZFIN;Acc:ZDB-GENE-081022-45]
48. gltscr1l gltscr1l 782 1.707 - - - - - 0.727 - 0.980 -
49. cyp51 ENSDARG00000042641 458 1.705 - 0.754 - - - 0.951 - - - cytochrome P450, family 51 [Source:ZFIN;Acc:ZDB-GENE-040625-2]
50. SPAG17 SPAG17 31 1.703 - 0.911 - - - - 0.792 - -
51. slc6a1b ENSDARG00000039647 1301 1.702 - - - - - 0.795 - 0.907 - solute carrier family 6 (neurotransmitter transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-041114-57]
52. PRKDC ENSDARG00000075083 693 1.697 - 0.705 - - - - - 0.992 - protein kinase, DNA-activated, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-030131-9008]
53. b4galt7 ENSDARG00000021899 546 1.696 - - - - - 0.714 - 0.982 - xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) [Source:ZFIN;Acc:ZDB-GENE-040727-3]
54. herc2 ENSDARG00000073841 486 1.687 - - 0.979 - - - 0.708 - - HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-070718-6]
55. BX682552.2 BX682552.2 1427 1.684 - - - - - - 0.779 0.905 -
56. fam199x ENSDARG00000009982 967 1.683 - - - - - - 0.703 0.980 - family with sequence similarity 199, X-linked [Source:ZFIN;Acc:ZDB-GENE-040808-24]
57. LYRM9 ENSDARG00000075528 329 1.681 - 0.948 - - - 0.733 - - - LYR motif containing 9 [Source:ZFIN;Acc:ZDB-GENE-081022-28]
58. trappc6bl ENSDARG00000033171, ENSDARG00000111544 911 1.68 - - 0.958 - - - 0.722 - - trafficking protein particle complex 6b-like [Source:ZFIN;Acc:ZDB-GENE-040426-1602]
59. map4k3a ENSDARG00000087742 771 1.676 0.773 0.903 - - - - - - - mitogen-activated protein kinase kinase kinase kinase 3a [Source:ZFIN;Acc:ZDB-GENE-130329-1]
60. inadl 80 1.67 0.806 0.864 - - - - - - - InaD-like (Drosophila), transcript variant X4
61. layna ENSDARG00000035169 515 1.67 - - 0.956 - - 0.714 - - - layilin a [Source:ZFIN;Acc:ZDB-GENE-070705-452]
62. inpp4b ENSDARG00000075201 267 1.669 - - 0.959 0.710 - - - - - inositol polyphosphate-4-phosphatase type II B [Source:ZFIN;Acc:ZDB-GENE-090312-97]
63. tnfaip3 ENSDARG00000027777 1066 1.668 - - - - - 0.739 - 0.929 - tumor necrosis factor, alpha-induced protein 3 [Source:ZFIN;Acc:ZDB-GENE-100212-2]
64. gpr144 gpr144 479 1.668 - - 0.967 - - 0.701 - - -
65. DSCAML1 ENSDARG00000098057 321 1.665 0.860 - - - - 0.805 - - - Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
66. USP31 ENSDARG00000074017 628 1.661 - 0.842 - - - 0.819 - - - ubiquitin specific peptidase 31 [Source:ZFIN;Acc:ZDB-GENE-100210-4]
67. MIS12 ENSDARG00000026454 649 1.659 0.739 - - - - 0.920 - - - MIS12 kinetochore complex component [Source:ZFIN;Acc:ZDB-GENE-040426-1372]
68. SLITRK6 ENSDARG00000098769 217 1.659 - 0.904 - 0.755 - - - - - SLIT and NTRK-like family, member 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2816]
69. pelo ENSDARG00000055477 1927 1.658 - - 0.955 0.703 - - - - - pelota mRNA surveillance and ribosome rescue factor [Source:ZFIN;Acc:ZDB-GENE-040426-1074]
70. crabp1b ENSDARG00000035904 2753 1.656 - - 0.939 - - 0.717 - - - cellular retinoic acid binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040624-3]
71. acy1 ENSDARG00000038475, ENSDARG00000111129 576 1.655 - - - - - - 0.714 0.941 - aminoacylase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-755]
72. TMEM246 ENSDARG00000061553 168 1.653 - 0.904 - - - 0.749 - - - transmembrane protein 246 [Source:ZFIN;Acc:ZDB-GENE-061013-692]
73. klf15 ENSDARG00000091127 1037 1.648 - - 0.909 - - - 0.739 - - Kruppel-like factor 15 [Source:ZFIN;Acc:ZDB-GENE-030131-7844]
74. mecr ENSDARG00000032326 314 1.648 - 0.918 - 0.730 - - - - - mitochondrial trans-2-enoyl-CoA reductase [Source:ZFIN;Acc:ZDB-GENE-050417-399]
75. CR352225.2 CR352225.2 1138 1.645 0.849 - - - - 0.796 - - -
76. st6galnac5b ENSDARG00000057433, ENSDARG00000110829 248 1.644 - 0.802 - - - - 0.842 - - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5b [Source:ZFIN;Acc:ZDB-GENE-040912-25]
77. snrnp27 ENSDARG00000035625 9080 1.643 - - 0.850 - - - - 0.793 - small nuclear ribonucleoprotein 27 (U4/U6.U5) [Source:ZFIN;Acc:ZDB-GENE-040718-457]
78. utp3 ENSDARG00000056720 922 1.643 - - - 0.787 - 0.856 - - - UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040912-163]
79. skap1 ENSDARG00000001498, ENSDARG00000114047 55 1.638 - 0.851 - - - - 0.787 - - src kinase associated phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-090721-1]
80. tbc1d5 ENSDARG00000036212 2580 1.638 - - 0.876 - - 0.762 - - - TBC1 domain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1197]
81. rgs3a ENSDARG00000099746 727 1.637 - - 0.908 - - 0.729 - - - regulator of G protein signaling 3a [Source:ZFIN;Acc:ZDB-GENE-040801-150]
82. psme4b ENSDARG00000018742, ENSDARG00000112854, ENSDARG00000114902 2916 1.636 - - 0.879 0.757 - - - - - proteasome activator subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100316-4]
83. ano10b ENSDARG00000018159 535 1.635 0.804 0.831 - - - - - - - anoctamin 10b [Source:ZFIN;Acc:ZDB-GENE-061013-169]
84. ttll11 ENSDARG00000060374, ENSDARG00000113807 225 1.633 0.864 - - - - 0.769 - - - tubulin tyrosine ligase-like family, member 11 [Source:ZFIN;Acc:ZDB-GENE-061013-747]
85. src ENSDARG00000008107 3643 1.632 0.741 - 0.891 - - - - - - v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-030131-3809]
86. si:ch211-220f16.2 ENSDARG00000007976 638 1.632 0.873 - - - - 0.759 - - - si:ch211-220f16.2 [Source:ZFIN;Acc:ZDB-GENE-070912-199]
87. PVRL4 1691 1.63 - 0.712 0.918 - - - - - - poliovirus receptor-related 4
88. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 1.623 - - - - - 0.764 - 0.859 - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
89. RBM6 ENSDARG00000077060 3521 1.623 - - - 0.839 - 0.784 - - - RNA binding motif protein 6 [Source:ZFIN;Acc:ZDB-GENE-050309-79]
90. abhd14a ENSDARG00000058367 546 1.623 0.786 - - - - 0.837 - - - abhydrolase domain containing 14A [Source:ZFIN;Acc:ZDB-GENE-040426-2428]
91. wu:fd44f01 wu:fd44f01 391 1.617 - 0.858 - - - 0.759 - - -
92. ZNF337_18 ZNF337_18 152 1.617 - 0.828 - - - 0.789 - - -
93. pcyt1aa ENSDARG00000011233 1985 1.614 - - - - - 0.719 - 0.895 - phosphate cytidylyltransferase 1, choline, alpha a [Source:ZFIN;Acc:ZDB-GENE-050417-108]
94. ADAM22 ENSDARG00000060532 2259 1.613 - 0.911 - - - 0.702 - - - ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
95. btd ENSDARG00000099596 88 1.609 0.836 - - - - - 0.773 - - biotinidase [Source:ZFIN;Acc:ZDB-GENE-060825-186]
96. zgc:174178 zgc:174178 104 1.606 - - - 0.732 - - 0.874 - -
97. SLC5A6 SLC5A6 179 1.603 0.852 - - 0.751 - - - - -
98. bub1bb ENSDARG00000074927 1667 1.602 - - 0.864 - - 0.738 - - - BUB1 mitotic checkpoint serine/threonine kinase Bb [Source:ZFIN;Acc:ZDB-GENE-030829-51]
99. ARID5B ENSDARG00000037196 165 1.591 - - - - - 0.854 0.737 - - AT-rich interaction domain 5B [Source:ZFIN;Acc:ZDB-GENE-121214-272]
100. CR847906.1 ENSDARG00000099493 88 1.589 - - - - - 0.756 0.833 - - protein NLRC3-like [Source:NCBI gene;Acc:571651]

There are 2439 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA