Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rae1

Gene Name Gene ID Reads Annotation
rae1 ENSDARG00000007196, ENSDARG00000113905 3321 ribonucleic acid export 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1029]










Genes with expression patterns similar to rae1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rae1 ENSDARG00000007196, ENSDARG00000113905 3321 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribonucleic acid export 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1029]
2. cops7a ENSDARG00000022788, ENSDARG00000112421 5302 2.685 - 0.971 0.952 - - 0.762 - - - COP9 constitutive photomorphogenic homolog subunit 7A [Source:ZFIN;Acc:ZDB-GENE-030131-8680]
3. si:ch211-133l11.10 ENSDARG00000005626 381 2.601 - 0.986 - 0.803 - 0.812 - - - si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
4. brd8 ENSDARG00000025071 2605 2.553 - - 0.955 - - - 0.762 - 0.836 bromodomain containing 8 [Source:ZFIN;Acc:ZDB-GENE-030722-10]
5. cul4b ENSDARG00000060510 6053 2.535 - 0.972 - - 0.859 0.704 - - - cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
6. dnajc10 ENSDARG00000074727 1523 2.434 - - - - - 0.727 0.879 - 0.828 DnaJ (Hsp40) homolog, subfamily C, member 10 [Source:ZFIN;Acc:ZDB-GENE-070327-1]
7. epn2 ENSDARG00000008377 5458 2.416 - 0.866 - - - - 0.771 - 0.779 epsin 2 [Source:ZFIN;Acc:ZDB-GENE-071212-1]
8. asna1 ENSDARG00000018190 5253 2.408 0.766 - - - - 0.796 0.846 - - arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [Source:ZFIN;Acc:ZDB-GENE-040625-120]
9. srsf6b ENSDARG00000016783 9926 2.389 - - 0.930 - - 0.704 0.755 - - serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
10. kdm5c ENSDARG00000006124 4389 2.383 - - - - 0.845 0.730 0.808 - - lysine (K)-specific demethylase 5C [Source:ZFIN;Acc:ZDB-GENE-060810-94]
11. dcbld2 ENSDARG00000062177, ENSDARG00000112201 3795 2.38 - - - 0.716 - 0.799 - - 0.865 discoidin, CUB and LCCL domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1822]
12. gpsm2 ENSDARG00000017311, ENSDARG00000113810 1001 2.38 0.796 - - 0.782 - - - - 0.802 G protein signaling modulator 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1169]
13. hmg20b ENSDARG00000042045, ENSDARG00000116536 2638 2.344 - - - 0.812 0.780 0.752 - - - high mobility group 20B [Source:ZFIN;Acc:ZDB-GENE-030131-4258]
14. vps35 ENSDARG00000008224 13245 2.294 - 0.824 - - - 0.756 0.714 - - vacuolar protein sorting 35 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-2042]
15. tbc1d5 ENSDARG00000036212 2580 2.258 - - - - 0.742 0.781 - - 0.735 TBC1 domain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1197]
16. NECAB3 ENSDARG00000074794 379 2.229 0.710 - - 0.745 - 0.774 - - - N-terminal EF-hand calcium binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-131121-74]
17. fam53b ENSDARG00000016156 2143 2.213 - - - - 0.755 0.716 - - 0.742 family with sequence similarity 53, member B [Source:ZFIN;Acc:ZDB-GENE-040426-2495]
18. hspa4b ENSDARG00000018989, ENSDARG00000112727, ENSDARG00000116230 7043 2.168 - - - - - 0.732 0.701 - 0.735 heat shock protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6018]
19. plrg1 ENSDARG00000037283, ENSDARG00000110921 1552 1.939 - 0.984 0.955 - - - - - - pleiotropic regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2787]
20. ddx3 ddx3 4076 1.925 - 0.975 0.950 - - - - - -
21. ndufv3 ENSDARG00000090389 4829 1.91 - 0.962 0.948 - - - - - - NADH:ubiquinone oxidoreductase subunit V3 [Source:ZFIN;Acc:ZDB-GENE-030131-6500]
22. maea ENSDARG00000053691 1840 1.872 - 0.987 - - - - - - 0.885 macrophage erythroblast attacher [Source:ZFIN;Acc:ZDB-GENE-030131-294]
23. gle1 ENSDARG00000043559 1362 1.867 - 0.985 - - - 0.882 - - - GLE1 RNA export mediator homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040831-4]
24. hdgfrp2 7462 1.842 - - 0.974 - - 0.868 - - - hepatoma-derived growth factor-related protein 2, transcript variant X1
25. ttc3 ENSDARG00000086075 2157 1.84 - 0.986 - - 0.854 - - - - tetratricopeptide repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-090313-3]
26. nop16 ENSDARG00000044402 3645 1.838 - 0.962 - - - - - - 0.876 NOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
27. ypel1 ENSDARG00000035630, ENSDARG00000112717 739 1.835 - 0.987 - - - 0.848 - - - yippee-like 1 [Source:ZFIN;Acc:ZDB-GENE-040808-41]
28. rcn1 ENSDARG00000070006 8455 1.828 - 0.908 0.920 - - - - - - reticulocalbin 1, EF-hand calcium binding domain [Source:ZFIN;Acc:ZDB-GENE-080225-33]
29. arl6ip1 ENSDARG00000054578, ENSDARG00000112340 11714 1.824 - 0.936 0.888 - - - - - - ADP-ribosylation factor-like 6 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1087]
30. CR293507.1 ENSDARG00000112572 3198 1.818 - 0.986 - - - - - - 0.832
31. pdcd10b ENSDARG00000012591 3395 1.818 - 0.967 - - - 0.851 - - - programmed cell death 10b [Source:ZFIN;Acc:ZDB-GENE-040426-2607]
32. ITFG1 ENSDARG00000075584, ENSDARG00000110264 615 1.813 - 0.985 - - - 0.828 - - - integrin alpha FG-GAP repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-121003-3]
33. gnb4b ENSDARG00000115383 7457 1.807 - - 0.945 - - - - - 0.862 guanine nucleotide binding protein (G protein), beta polypeptide 4b [Source:ZFIN;Acc:ZDB-GENE-041114-167]
34. si:ch211-129c21.1 ENSDARG00000024775 371 1.806 - 0.985 - - - - - - 0.821 si:ch211-129c21.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5796]
35. fam118b ENSDARG00000078983 1822 1.8 - - 0.954 - - - - - 0.846 family with sequence similarity 118, member B [Source:ZFIN;Acc:ZDB-GENE-060810-6]
36. flncb ENSDARG00000018820 5595 1.797 - 0.864 0.933 - - - - - - filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
37. tbp ENSDARG00000014994 1591 1.797 - - 0.955 - - - - - 0.842 TATA box binding protein [Source:ZFIN;Acc:ZDB-GENE-030616-563]
38. FUZ ENSDARG00000079730 821 1.788 - - 0.957 - - - - - 0.831 fuzzy planar cell polarity protein [Source:ZFIN;Acc:ZDB-GENE-090609-2]
39. glsb ENSDARG00000040705 1439 1.783 - 0.982 - - - - - - 0.801 glutaminase b [Source:ZFIN;Acc:ZDB-GENE-030616-550]
40. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 1.781 - 0.983 - - - - - - 0.798 small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
41. pgam5 ENSDARG00000035608 4044 1.773 - - 0.956 - - - - - 0.817 PGAM family member 5, serine/threonine protein phosphatase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-683]
42. abcf1 ENSDARG00000031795 8635 1.77 - 0.836 0.934 - - - - - - ATP-binding cassette, sub-family F (GCN20), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-31]
43. si:dkey-22o12.7 si:dkey-22o12.7 1812 1.77 - 0.984 - - 0.786 - - - -
44. CASK CASK 1750 1.769 - 0.987 - - - 0.782 - - -
45. DACT3_1 DACT3_1 1235 1.749 - - 0.955 - - 0.794 - - -
46. zbtb33 ENSDARG00000071467, ENSDARG00000112085 1425 1.749 - - 0.957 - - - - 0.792 - zinc finger and BTB domain containing 33 [Source:ZFIN;Acc:ZDB-GENE-070412-3]
47. matr3l1.1_1 ENSDARG00000000394, ENSDARG00000001162 1860 1.746 - - 0.955 0.791 - - - - - matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
48. ARFGAP1 ENSDARG00000101616 2952 1.744 - - 0.904 - - 0.840 - - - ADP-ribosylation factor GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-041114-130]
49. sepw2a 8597 1.74 - - 0.941 - - 0.799 - - - selenoprotein W, 2a
50. akirin2 ENSDARG00000058729 13245 1.736 - 0.990 - - - 0.746 - - - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
51. sart3 ENSDARG00000008032 2594 1.735 - 0.983 - - - - - - 0.752 squamous cell carcinoma antigen recognized by T cells 3 [Source:ZFIN;Acc:ZDB-GENE-040724-10]
52. GSG2 GSG2 1162 1.733 - - 0.957 - - 0.776 - - -
53. supt20 ENSDARG00000078658 713 1.73 0.743 0.987 - - - - - - - SPT20 homolog, SAGA complex component [Source:ZFIN;Acc:ZDB-GENE-091204-264]
54. nabp1a ENSDARG00000004692, ENSDARG00000115485 1843 1.729 - 0.989 - - - - - 0.740 - nucleic acid binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-041212-71]
55. PELP1 ENSDARG00000079313 5771 1.725 - 0.946 - - - - 0.779 - - proline, glutamate and leucine rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-140106-164]
56. wasf3 wasf3 3287 1.723 - - - - 0.808 - - 0.915 -
57. SLC6A16_1 SLC6A16_1 1130 1.714 - 0.986 - - - 0.728 - - -
58. ddx27 ENSDARG00000091831 1471 1.71 - - - - 0.853 - - - 0.857 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]
59. clic4 ENSDARG00000022995 6064 1.702 - - 0.948 - - 0.754 - - - chloride intracellular channel 4 [Source:ZFIN;Acc:ZDB-GENE-030326-3]
60. unc119b ENSDARG00000044362 1528 1.701 - - 0.913 - - 0.788 - - - unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]
61. fkbp2 ENSDARG00000044540 1615 1.697 - - - - - - 0.839 - 0.858 FK506 binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040912-126]
62. tgfb3 ENSDARG00000019367 2327 1.695 - 0.985 - - - - - - 0.710 transforming growth factor, beta 3 [Source:ZFIN;Acc:ZDB-GENE-030723-4]
63. zgc:65772 zgc:65772 2092 1.693 - - - - 0.802 - - - 0.891
64. abcb7 ENSDARG00000062795 1404 1.693 - - - - - 0.839 - - 0.854 ATP-binding cassette, sub-family B (MDR/TAP), member 7 [Source:ZFIN;Acc:ZDB-GENE-050517-10]
65. MAP4K4 ENSDARG00000098670 4665 1.689 - 0.984 - - - 0.705 - - - mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
66. cox5ab ENSDARG00000099663 5689 1.688 - 0.970 - - - - 0.718 - - cytochrome c oxidase subunit 5Ab [Source:ZFIN;Acc:ZDB-GENE-030131-5162]
67. MIS12 ENSDARG00000026454 649 1.687 - - - - - 0.814 - - 0.873 MIS12 kinetochore complex component [Source:ZFIN;Acc:ZDB-GENE-040426-1372]
68. CU655970.1 CU655970.1 2123 1.685 - 0.982 - - - 0.703 - - -
69. traf4a ENSDARG00000003963, ENSDARG00000109586 1595 1.682 - - - - - 0.817 - - 0.865 tnf receptor-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-040308-1]
70. psma4 ENSDARG00000045928 5112 1.68 - - - - 0.857 0.823 - - - proteasome subunit alpha 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1932]
71. si:dkey-238c7.12 si:dkey-238c7.12 6600 1.679 - - 0.936 0.743 - - - - -
72. fam13a ENSDARG00000075564 1905 1.677 0.849 - - - 0.828 - - - - family with sequence similarity 13, member A [Source:ZFIN;Acc:ZDB-GENE-050208-102]
73. slc7a6os ENSDARG00000010596 1599 1.676 - - - 0.842 - 0.834 - - - solute carrier family 7, member 6 opposite strand [Source:ZFIN;Acc:ZDB-GENE-041114-32]
74. ttyh2 ENSDARG00000016934 1868 1.674 - - - - - 0.787 - - 0.887 tweety family member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-193]
75. trpc4apa ENSDARG00000018840 2543 1.673 - 0.972 - - - - 0.701 - - transient receptor potential cation channel, subfamily C, member 4 associated protein a [Source:ZFIN;Acc:ZDB-GENE-000330-3]
76. eif4ebp2 ENSDARG00000031819 13168 1.669 0.725 - 0.944 - - - - - - eukaryotic translation initiation factor 4E binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-83]
77. chmp2bb ENSDARG00000002190 4629 1.664 - 0.959 - - - - 0.705 - - charged multivesicular body protein 2Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2539]
78. tfap4 ENSDARG00000103923 2203 1.661 - - - - 0.855 - - - 0.806 transcription factor AP-4 (activating enhancer binding protein 4) [Source:ZFIN;Acc:ZDB-GENE-090810-1]
79. cdca7a ENSDARG00000077620 9345 1.658 - 0.929 - - - 0.729 - - - cell division cycle associated 7a [Source:ZFIN;Acc:ZDB-GENE-050417-29]
80. MSL1_1 MSL1_1 2365 1.656 - - - - 0.762 0.894 - - -
81. zdhhc6 ENSDARG00000075721 1494 1.656 - - 0.956 - - 0.700 - - - zinc finger, DHHC-type containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-3189]
82. rangap1a ENSDARG00000041317 1456 1.652 - - - - - 0.826 - - 0.826 RAN GTPase activating protein 1a [Source:ZFIN;Acc:ZDB-GENE-060929-492]
83. GANAB_2 GANAB_2 3210 1.652 - - 0.813 - - 0.839 - - -
84. sin3ab ENSDARG00000059812 2140 1.649 - - - - 0.856 0.793 - - - SIN3 transcription regulator family member Ab [Source:ZFIN;Acc:ZDB-GENE-030131-2066]
85. mapk14a ENSDARG00000000857, ENSDARG00000112397 1743 1.645 - - - - - 0.846 0.799 - - mitogen-activated protein kinase 14a [Source:ZFIN;Acc:ZDB-GENE-010202-2]
86. prpf6 ENSDARG00000091367 1868 1.644 - - - 0.782 - - - - 0.862 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-2575]
87. wdr43 ENSDARG00000077264 1992 1.644 - - - - - 0.798 - - 0.846 WD repeat domain 43 [Source:ZFIN;Acc:ZDB-GENE-021231-3]
88. CR387996.1 ENSDARG00000097774 3037 1.641 - - - - - 0.756 - - 0.885
89. ubr4 ENSDARG00000009549 5565 1.64 - 0.935 - - - - 0.705 - - ubiquitin protein ligase E3 component n-recognin 4 [Source:ZFIN;Acc:ZDB-GENE-090313-341]
90. olig4 ENSDARG00000052610, ENSDARG00000116678 1704 1.639 - - - - - 0.814 - 0.825 - oligodendrocyte transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-3580]
91. paf1 ENSDARG00000098432 1806 1.633 - - - - 0.820 - - - 0.813 PAF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-050506-101]
92. nt5c2b ENSDARG00000058231 3822 1.633 - 0.926 - - - - 0.707 - - 5'-nucleotidase, cytosolic IIb [Source:ZFIN;Acc:ZDB-GENE-061013-522]
93. nfs1 ENSDARG00000062237 2741 1.632 - - - - 0.791 - - - 0.841 NFS1 cysteine desulfurase [Source:ZFIN;Acc:ZDB-GENE-060405-1]
94. atp6v1c1a ENSDARG00000023967 4611 1.628 - - - - - - 0.798 - 0.830 ATPase H+ transporting V1 subunit C1a [Source:ZFIN;Acc:ZDB-GENE-030616-612]
95. nup210 ENSDARG00000063333 995 1.624 - - - - 0.842 0.782 - - - nucleoporin 210 [Source:ZFIN;Acc:ZDB-GENE-050208-132]
96. cnot11 ENSDARG00000068596 829 1.621 0.825 - - - - 0.796 - - - CCR4-NOT transcription complex, subunit 11 [Source:ZFIN;Acc:ZDB-GENE-030131-8068]
97. lrrc47 ENSDARG00000053138 417 1.62 - - - 0.855 - 0.765 - - - leucine rich repeat containing 47 [Source:ZFIN;Acc:ZDB-GENE-060503-289]
98. rasgef1bb ENSDARG00000044251, ENSDARG00000117029 635 1.619 - - - 0.791 - - - - 0.828 RasGEF domain family, member 1Bb [Source:ZFIN;Acc:ZDB-GENE-040801-220]
99. aurkb ENSDARG00000037640 4874 1.614 - - - - - 0.823 - - 0.791 aurora kinase B [Source:ZFIN;Acc:ZDB-GENE-020419-40]
100. wdr59 ENSDARG00000088817 1005 1.614 - - - 0.793 0.821 - - - - WD repeat domain 59 [Source:ZFIN;Acc:ZDB-GENE-120215-187]

There are 2663 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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