Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rab5c

Gene Name Gene ID Reads Annotation
rab5c ENSDARG00000026712 4733 RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]










Genes with expression patterns similar to rab5c

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rab5c ENSDARG00000026712 4733 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
2. vta1 ENSDARG00000013732 6072 3.239 - - 0.978 - - 0.719 0.760 0.782 - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
3. mrpl11 ENSDARG00000013075 2927 2.853 - - 0.972 0.982 - - - 0.899 - mitochondrial ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040718-294]
4. gpbp1l1 ENSDARG00000075569, ENSDARG00000112704 3478 2.625 0.789 - 0.981 - 0.855 - - - - GC-rich promoter binding protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-031118-220]
5. arpp19b ENSDARG00000039880 4823 2.623 - - 0.925 0.961 - - - 0.737 - cAMP-regulated phosphoprotein 19b [Source:ZFIN;Acc:ZDB-GENE-040426-930]
6. pank1b ENSDARG00000010098 3202 2.608 - 0.916 - - 0.885 - - 0.807 - pantothenate kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070209-259]
7. stx2b ENSDARG00000068217 2567 2.574 0.767 - - - - - 0.811 - 0.996 syntaxin 2b [Source:ZFIN;Acc:ZDB-GENE-091204-424]
8. lima1 lima1 4760 2.547 - - - - 0.946 - 0.804 0.797 -
9. rab5b ENSDARG00000016059, ENSDARG00000114966 1252 2.524 0.793 - - - 0.952 - 0.779 - - RAB5B, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040426-2593]
10. lum ENSDARG00000045580 5395 2.523 0.824 - - - 0.942 0.757 - - - lumican [Source:ZFIN;Acc:ZDB-GENE-040625-24]
11. ddi2 ENSDARG00000006477 4190 2.514 - - - - 0.909 - 0.803 0.802 - DNA-damage inducible protein 2 [Source:ZFIN;Acc:ZDB-GENE-031030-15]
12. epas1a ENSDARG00000008697 3225 2.482 - 0.802 0.950 - - - 0.730 - - endothelial PAS domain protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4490]
13. erlin1 ENSDARG00000021991 5664 2.476 - 0.867 0.901 - - - 0.708 - - ER lipid raft associated 1 [Source:ZFIN;Acc:ZDB-GENE-050327-13]
14. cldn7b ENSDARG00000014047, ENSDARG00000114912 2960 2.467 0.851 0.852 - - - 0.764 - - - claudin 7b [Source:ZFIN;Acc:ZDB-GENE-001103-5]
15. baz1b ENSDARG00000102832, ENSDARG00000114866 3543 2.461 - 0.871 0.833 - - - - 0.757 - bromodomain adjacent to zinc finger domain, 1B [Source:ZFIN;Acc:ZDB-GENE-010328-16]
16. arcn1b ENSDARG00000031214 4529 2.401 - 0.825 - - - 0.807 0.769 - - archain 1b [Source:ZFIN;Acc:ZDB-GENE-040121-7]
17. CABZ01055343.2 CABZ01055343.2 10312 2.393 0.705 - - 0.975 - - 0.713 - -
18. srsf9 ENSDARG00000008097 2405 2.33 0.749 - - - - - 0.756 0.825 - serine/arginine-rich splicing factor 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2397]
19. id3 ENSDARG00000054823 3484 2.264 - - - - - 0.732 0.710 0.822 - inhibitor of DNA binding 3 [Source:ZFIN;Acc:ZDB-GENE-020515-1]
20. itm2bb ENSDARG00000041505 2734 2.26 0.716 - - - - 0.765 0.779 - - integral membrane protein 2Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2139]
21. fam135a ENSDARG00000059843 2352 1.972 - - 0.976 - - - - - 0.996 family with sequence similarity 135, member A [Source:ZFIN;Acc:ZDB-GENE-080130-1]
22. fzr1 fzr1 2984 1.957 - - 0.969 0.988 - - - - -
23. pax6a ENSDARG00000103379 3061 1.954 - - - 0.963 - - - - 0.991 paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
24. emc3 ENSDARG00000020607 3406 1.953 - - 0.973 0.980 - - - - - ER membrane protein complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2904]
25. tcf3b ENSDARG00000099999, ENSDARG00000112646 3589 1.948 - - 0.959 0.989 - - - - - transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-051113-64]
26. med13b ENSDARG00000003910 1143 1.931 - - 0.975 - 0.956 - - - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
27. atxn7l3 ENSDARG00000029331 531 1.927 - - 0.974 - 0.953 - - - - ataxin 7-like 3 [Source:ZFIN;Acc:ZDB-GENE-030616-253]
28. mrps33 ENSDARG00000020015 3551 1.918 - - - - 0.922 - - - 0.996 mitochondrial ribosomal protein S33 [Source:ZFIN;Acc:ZDB-GENE-040715-6]
29. eftud2 ENSDARG00000012261 3081 1.914 - - 0.953 0.961 - - - - - elongation factor Tu GTP binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1569]
30. ncalda ENSDARG00000070688 5069 1.909 - - 0.931 0.978 - - - - - neurocalcin delta a [Source:ZFIN;Acc:ZDB-GENE-080220-28]
31. atp6ap1b ENSDARG00000037153 3970 1.908 - 0.933 - 0.975 - - - - - ATPase H+ transporting accessory protein 1b [Source:ZFIN;Acc:ZDB-GENE-020423-2]
32. tmem30ab ENSDARG00000043555 1344 1.903 - - 0.975 - - - - 0.928 - transmembrane protein 30Ab [Source:ZFIN;Acc:ZDB-GENE-030131-5884]
33. ppp3ccb ENSDARG00000057456, ENSDARG00000116250 6265 1.894 - - 0.923 0.971 - - - - - protein phosphatase 3, catalytic subunit, gamma isozyme, b [Source:ZFIN;Acc:ZDB-GENE-070112-1102]
34. rfc1 ENSDARG00000054799 1416 1.885 - - 0.949 - 0.936 - - - - replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]
35. zswim8 ENSDARG00000069397, ENSDARG00000112914 2378 1.878 - 0.923 - - 0.955 - - - - zinc finger, SWIM-type containing 8 [Source:ZFIN;Acc:ZDB-GENE-050320-59]
36. tubgcp2 ENSDARG00000013079 1520 1.872 - - 0.972 - - - - 0.900 - tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
37. nxf1 ENSDARG00000055076 3251 1.869 - - 0.954 - 0.915 - - - - nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
38. bcl9 ENSDARG00000036687 1124 1.858 - - 0.970 - - - - 0.888 - B cell CLL/lymphoma 9 [Source:ZFIN;Acc:ZDB-GENE-090313-135]
39. nol9 ENSDARG00000077751 2471 1.857 - - 0.961 - 0.896 - - - - nucleolar protein 9 [Source:ZFIN;Acc:ZDB-GENE-070629-1]
40. efnb3b ENSDARG00000042277 5823 1.855 - - 0.937 0.918 - - - - - ephrin-B3b [Source:ZFIN;Acc:ZDB-GENE-010618-3]
41. krt1-19d ENSDARG00000023082 902 1.854 - - - 0.986 - - - 0.868 - keratin, type 1, gene 19d [Source:ZFIN;Acc:ZDB-GENE-060316-1]
42. ube2h ENSDARG00000000019 9900 1.853 - - 0.901 0.952 - - - - - ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030616-67]
43. tox4 tox4 1671 1.85 - 0.861 - 0.989 - - - - -
44. pds5a ENSDARG00000055022, ENSDARG00000115793 3842 1.849 - 0.850 - - - - - - 0.999 PDS5 cohesin associated factor A [Source:ZFIN;Acc:ZDB-GENE-040426-1612]
45. ATL2 ENSDARG00000057719, ENSDARG00000113378, ENSDARG00000113487 1987 1.846 - - 0.967 - - - - 0.879 - atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
46. strn3 ENSDARG00000001729 4608 1.845 - 0.863 - - - - - - 0.982 striatin, calmodulin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-405]
47. lrrtm1 ENSDARG00000052713 1041 1.844 - - - 0.992 - - - 0.852 - leucine rich repeat transmembrane neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-050506-80]
48. dsc2l ENSDARG00000039677 2747 1.838 0.887 - 0.951 - - - - - - desmocollin 2 like [Source:ZFIN;Acc:ZDB-GENE-031116-55]
49. isca1 ENSDARG00000051956 5855 1.835 - 0.909 0.926 - - - - - - iron-sulfur cluster assembly 1 [Source:ZFIN;Acc:ZDB-GENE-050626-94]
50. lig4 ENSDARG00000060620 369 1.832 - - - - 0.949 - - 0.883 - ligase IV, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-070820-10]
51. im:7136729 im:7136729 1625 1.827 - 0.856 0.971 - - - - - -
52. spag7 ENSDARG00000011555 3224 1.824 - 0.867 - - 0.957 - - - - sperm associated antigen 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1632]
53. prr12a ENSDARG00000074229 1668 1.824 - 0.862 0.962 - - - - - - proline rich 12a [Source:ZFIN;Acc:ZDB-GENE-041111-223]
54. tmem189 ENSDARG00000042732 4004 1.823 - - 0.976 - - 0.847 - - - transmembrane protein 189 [Source:ZFIN;Acc:ZDB-GENE-041010-150]
55. fdx1 ENSDARG00000056410, ENSDARG00000115831 3463 1.822 - - - - - - - 0.827 0.995 ferredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-071015-2]
56. atpif1a 6030 1.817 - 0.868 0.949 - - - - - - ATPase inhibitory factor 1a
57. aqr ENSDARG00000016775 1581 1.815 - 0.847 0.968 - - - - - - aquarius intron-binding spliceosomal factor [Source:ZFIN;Acc:ZDB-GENE-040426-1189]
58. OMG OMG 1202 1.814 0.894 0.920 - - - - - - -
59. elmod2 ENSDARG00000101669 3101 1.812 - - 0.959 - - - - 0.853 - ELMO/CED-12 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060824-2]
60. dlgap4a ENSDARG00000060849 1813 1.812 0.853 - 0.959 - - - - - - discs, large (Drosophila) homolog-associated protein 4a [Source:ZFIN;Acc:ZDB-GENE-080219-51]
61. pknox1.2 ENSDARG00000036542 1503 1.81 0.814 - - - - - - - 0.996 pbx/knotted 1 homeobox 1.2 [Source:ZFIN;Acc:ZDB-GENE-020123-1]
62. pdlim5b ENSDARG00000027600 4252 1.81 - 0.946 - - 0.864 - - - - PDZ and LIM domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-908]
63. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.808 - - 0.882 - 0.926 - - - - ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
64. polr3e ENSDARG00000037358 1864 1.807 0.819 - - 0.988 - - - - - polymerase (RNA) III (DNA directed) polypeptide E [Source:ZFIN;Acc:ZDB-GENE-030131-8462]
65. psd3l ENSDARG00000104820 1201 1.801 - - 0.979 - - - - 0.822 - pleckstrin and Sec7 domain containing 3, like [Source:ZFIN;Acc:ZDB-GENE-030131-8195]
66. G3BP2 ENSDARG00000014790 9380 1.797 - - - - 0.907 - - - 0.890 GTPase activating protein (SH3 domain) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1972]
67. necap2 ENSDARG00000046002 4372 1.797 - - 0.959 - - - 0.838 - - NECAP endocytosis associated 2 [Source:ZFIN;Acc:ZDB-GENE-050522-67]
68. gpd1l ENSDARG00000040024 2182 1.793 - - 0.936 - - - - 0.857 - glycerol-3-phosphate dehydrogenase 1 like [Source:ZFIN;Acc:ZDB-GENE-041010-220]
69. sf3b2 ENSDARG00000018049 4675 1.789 - - 0.922 - 0.867 - - - - splicing factor 3b, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070928-1]
70. g6pca.1 ENSDARG00000031616 401 1.786 - - 0.974 - - - 0.812 - - glucose-6-phosphatase a, catalytic subunit, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-031001-4]
71. yap1 ENSDARG00000068401, ENSDARG00000112952 16365 1.782 - 0.859 - 0.923 - - - - - Yes-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9710]
72. psmb6 ENSDARG00000002240 8015 1.777 - - - - 0.928 - - 0.849 - proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
73. CABZ01081490.1 ENSDARG00000111653 11892 1.775 - - 0.868 - 0.907 - - - -
74. thy1 ENSDARG00000035018, ENSDARG00000112392, ENSDARG00000112677 9697 1.773 - - - - - - 0.788 - 0.985 Thy-1 cell surface antigen [Source:ZFIN;Acc:ZDB-GENE-030131-8561]
75. gmfb ENSDARG00000028327 6522 1.772 - - - - - - 0.891 - 0.881 glia maturation factor, beta [Source:ZFIN;Acc:ZDB-GENE-040426-2114]
76. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 1.768 - - 0.940 - - - - 0.828 - immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
77. lrrc24 ENSDARG00000101704 224 1.762 0.877 - - - - - - 0.885 - leucine rich repeat containing 24 [Source:ZFIN;Acc:ZDB-GENE-060503-496]
78. mybbp1a ENSDARG00000078214 2458 1.76 - - 0.868 - - - - 0.892 - MYB binding protein (P160) 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9864]
79. zgc:163098 ENSDARG00000078911, ENSDARG00000111691, ENSDARG00000113714, ENSDARG00000115110 1802 1.758 0.780 - 0.978 - - - - - - zgc:163098 [Source:ZFIN;Acc:ZDB-GENE-070410-141]
80. cyp2aa9 ENSDARG00000098890 839 1.755 0.920 - - - - - 0.835 - - cytochrome P450, family 2, subfamily AA, polypeptide 9 [Source:ZFIN;Acc:ZDB-GENE-080724-3]
81. hnrpdl 14288 1.755 - 0.842 0.913 - - - - - - heterogeneous nuclear ribonucleoprotein D-like, transcript variant X2
82. JMJD1C_1 JMJD1C_1 3094 1.754 0.793 - 0.961 - - - - - -
83. slka ENSDARG00000061525 1678 1.753 0.792 - 0.961 - - - - - - STE20-like kinase a [Source:ZFIN;Acc:ZDB-GENE-050411-66]
84. tecrb ENSDARG00000025904 4612 1.751 0.842 0.909 - - - - - - - trans-2,3-enoyl-CoA reductase b [Source:ZFIN;Acc:ZDB-GENE-030131-5154]
85. ube2v2 ENSDARG00000028198 23341 1.751 - - 0.787 - - - - - 0.964 ubiquitin-conjugating enzyme E2 variant 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2919]
86. pck2 ENSDARG00000020956, ENSDARG00000110463 4713 1.75 - - - - - - 0.755 - 0.995 phosphoenolpyruvate carboxykinase 2 (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-040426-2266]
87. rpe ENSDARG00000005251, ENSDARG00000117024 3865 1.749 - 0.920 - - - - 0.829 - - ribulose-5-phosphate-3-epimerase [Source:ZFIN;Acc:ZDB-GENE-030131-6837]
88. cst3 ENSDARG00000007795 13753 1.744 - - - - - - 0.756 - 0.988 cystatin C (amyloid angiopathy and cerebral hemorrhage) [Source:ZFIN;Acc:ZDB-GENE-030131-373]
89. cd99 ENSDARG00000051975 3824 1.74 - - - - 0.934 - 0.806 - - CD99 molecule [Source:ZFIN;Acc:ZDB-GENE-061103-391]
90. tomm22 ENSDARG00000045146, ENSDARG00000109761 3545 1.74 - 0.835 - - 0.905 - - - - translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-9810]
91. si:ch73-52f15.5 ENSDARG00000095400 1368 1.74 - - - 0.992 - - 0.748 - - si:ch73-52f15.5 [Source:ZFIN;Acc:ZDB-GENE-091204-341]
92. fbxw11b ENSDARG00000017230, ENSDARG00000112841 2593 1.738 - - 0.980 - - - 0.758 - - F-box and WD repeat domain containing 11b [Source:ZFIN;Acc:ZDB-GENE-040426-2903]
93. sp1 ENSDARG00000088347 1697 1.738 - 0.862 - - - - - 0.876 - sp1 transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-2829]
94. copg2 ENSDARG00000034823 4162 1.734 - 0.885 - - - - 0.849 - - coatomer protein complex, subunit gamma 2 [Source:ZFIN;Acc:ZDB-GENE-000208-8]
95. si:ch73-375g18.1 ENSDARG00000075024 2431 1.733 - - 0.968 - - - 0.765 - - si:ch73-375g18.1 [Source:ZFIN;Acc:ZDB-GENE-110408-56]
96. tpst1 ENSDARG00000073872 2490 1.732 - 0.868 - - - - - 0.864 - tyrosylprotein sulfotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-000210-10]
97. cox7a3 20842 1.73 - 0.869 - - - - - 0.861 - cytochrome c oxidase subunit VIIa polypeptide 3
98. capn2b ENSDARG00000055592 5431 1.728 - 0.860 - - 0.868 - - - - calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
99. srp19 ENSDARG00000035699 2624 1.725 - - 0.978 - - - - 0.747 - signal recognition particle 19 [Source:ZFIN;Acc:ZDB-GENE-040426-2657]
100. aqp1a.1 ENSDARG00000023713 3237 1.722 - - - - - - - 0.730 0.992 aquaporin 1a (Colton blood group), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7764]

There are 2097 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA