Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for r3hdm1

Gene Name Gene ID Reads Annotation
r3hdm1 ENSDARG00000101458 5241 R3H domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7119]










Genes with expression patterns similar to r3hdm1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. r3hdm1 ENSDARG00000101458 5241 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 R3H domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7119]
2. sf3a1 ENSDARG00000041887 6702 3.216 - 0.900 - - - 0.745 0.816 - 0.755 splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
3. smarca5 ENSDARG00000052348 15433 2.511 - - - - - - 0.866 0.824 0.821 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
4. st13 ENSDARG00000021973 7787 2.462 - - - - - 0.774 0.824 0.864 - ST13, Hsp70 interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-5395]
5. sh2d3ca ENSDARG00000028099 1037 2.331 - - - - - 0.771 0.804 - 0.756 SH2 domain containing 3Ca [Source:ZFIN;Acc:ZDB-GENE-080102-1]
6. lbr ENSDARG00000014013 4835 2.303 - - - - - - 0.765 0.824 0.714 lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
7. sarnp ENSDARG00000059357 4768 2.263 0.712 - - - - 0.722 0.829 - - SAP domain containing ribonucleoprotein [Source:ZFIN;Acc:ZDB-GENE-050522-161]
8. GABARAP GABARAP 8341 2.206 - - - - - 0.721 0.766 0.719 -
9. aurkb ENSDARG00000037640 4874 1.817 - 0.996 - - - - 0.821 - - aurora kinase B [Source:ZFIN;Acc:ZDB-GENE-020419-40]
10. NPR2 ENSDARG00000104393 1875 1.788 - 0.994 - - - - 0.794 - - natriuretic peptide receptor 2 [Source:ZFIN;Acc:ZDB-GENE-141030-2]
11. mgat1b ENSDARG00000036065 996 1.782 - 0.993 - - - - - 0.789 - mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase b [Source:ZFIN;Acc:ZDB-GENE-061103-589]
12. irf6 ENSDARG00000101986 1438 1.777 - 0.994 - - - - - 0.783 - interferon regulatory factor 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1137]
13. serinc5 ENSDARG00000008153 2863 1.771 - 0.993 - - - - 0.778 - - serine incorporator 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2918]
14. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 1.759 - 0.994 - - - - - - 0.765 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
15. klhl40b ENSDARG00000019125 3633 1.751 - 0.996 - - - - - 0.755 - kelch-like family member 40b [Source:ZFIN;Acc:ZDB-GENE-060227-1]
16. tardbpl ENSDARG00000004452, ENSDARG00000116205 12160 1.716 - 0.923 - - - 0.793 - - - TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]
17. swi5 ENSDARG00000078492 1299 1.713 - 0.991 - - - - 0.722 - - SWI5 homologous recombination repair protein [Source:ZFIN;Acc:ZDB-GENE-091204-368]
18. hnrnpub ENSDARG00000004735 16496 1.71 - 0.905 - - - - - - 0.805 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
19. tmem50a ENSDARG00000015757 3244 1.71 - - - - - - 0.862 0.848 - transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]
20. sumo3a ENSDARG00000028119 13447 1.709 - 0.985 - - - - - - 0.724 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
21. hadhab ENSDARG00000060594 3664 1.7 - 0.994 - - - - 0.706 - - hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha b [Source:ZFIN;Acc:ZDB-GENE-041111-204]
22. psmd8 ENSDARG00000020454 6645 1.692 - - - - - - 0.838 0.854 - proteasome 26S subunit, non-ATPase 8 [Source:ZFIN;Acc:ZDB-GENE-040625-136]
23. scaf4a ENSDARG00000077093 2408 1.613 - - - - - - 0.789 0.824 - SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
24. GATAD2B ENSDARG00000005834 3855 1.608 - - - - - - 0.748 - 0.860 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
25. crmp1 ENSDARG00000056742 332 1.598 - - - - - - - 0.836 0.762 collapsin response mediator protein 1 [Source:ZFIN;Acc:ZDB-GENE-050720-1]
26. si:dkey-19e4.5 ENSDARG00000089886 2562 1.597 - - - - - 0.709 0.888 - - si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
27. fam219aa ENSDARG00000016396 1788 1.592 - - - - - 0.760 0.832 - - family with sequence similarity 219, member Aa [Source:ZFIN;Acc:ZDB-GENE-040801-110]
28. dpysl3 ENSDARG00000002587 4381 1.583 - - - - - - - 0.847 0.736 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
29. si:ch211-69g19.2 ENSDARG00000070656, ENSDARG00000110191, ENSDARG00000114528 2860 1.579 - - - - - 0.721 - 0.858 - si:ch211-69g19.2 [Source:ZFIN;Acc:ZDB-GENE-030804-13]
30. otub1b ENSDARG00000011462 4329 1.569 - - - - - 0.773 0.796 - - OTU deubiquitinase, ubiquitin aldehyde binding 1b [Source:ZFIN;Acc:ZDB-GENE-040718-204]
31. nop10 ENSDARG00000104227 2463 1.568 - - - - - - 0.739 0.829 - NOP10 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-041007-4]
32. smg7 ENSDARG00000060767 2759 1.568 - - - - - - 0.781 0.787 - SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
33. sf1 ENSDARG00000008188 5142 1.563 - - - - - - 0.800 - 0.763 splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]
34. pop7 ENSDARG00000036394 1684 1.563 - - - - - - 0.846 - 0.717 POP7 homolog, ribonuclease P/MRP subunit [Source:ZFIN;Acc:ZDB-GENE-041010-88]
35. psma6a ENSDARG00000019398 2702 1.557 - - - - - 0.851 0.706 - - proteasome subunit alpha 6a [Source:ZFIN;Acc:ZDB-GENE-020326-1]
36. suz12a ENSDARG00000070256 2229 1.552 - - - - - - 0.723 0.829 - SUZ12, polycomb repressive complex 2 subunit a [Source:ZFIN;Acc:ZDB-GENE-040801-36]
37. creb1a ENSDARG00000053586 5068 1.551 - - - - - - - 0.767 0.784 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
38. slit3 ENSDARG00000034268, ENSDARG00000111488, ENSDARG00000115194 3999 1.547 - - - - - 0.755 - 0.792 - slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
39. SNRPG ENSDARG00000099667 18697 1.545 - - - - - - 0.813 - 0.732 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
40. puf60a ENSDARG00000032175 5618 1.542 - - - - - - - 0.818 0.724 poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
41. whsc1 1701 1.541 - - - - - - 0.836 - 0.705 Wolf-Hirschhorn syndrome candidate 1
42. prp19 prp19 4804 1.539 - - - - - 0.773 0.766 - -
43. rtf1 ENSDARG00000008947 6596 1.539 - - - - - - - 0.768 0.771 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
44. bcl11ab ENSDARG00000063153 3032 1.539 - - - - - - 0.732 - 0.807 B cell CLL/lymphoma 11Ab [Source:ZFIN;Acc:ZDB-GENE-061009-4]
45. hmgb2b ENSDARG00000053990 11519 1.538 - - - - - - 0.768 - 0.770 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
46. sin3b ENSDARG00000062472 2025 1.538 - - - - - - 0.803 - 0.735 SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
47. prpf40a ENSDARG00000058467 6565 1.538 - 0.814 - - - - - - 0.724 PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
48. phf3 ENSDARG00000034768 1372 1.536 0.719 - - - - - - 0.817 - PHD finger protein 3 [Source:ZFIN;Acc:ZDB-GENE-090313-207]
49. marcksa ENSDARG00000004049 2518 1.534 - - - - - 0.759 - - 0.775 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
50. ppp4ca ENSDARG00000070570 8395 1.531 - - - - - 0.706 - 0.825 - protein phosphatase 4, catalytic subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-4433]
51. rasal2 ENSDARG00000036257 3223 1.529 - - - - - - 0.741 0.788 - RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
52. nova2 ENSDARG00000017673 7685 1.527 - - - - - - - 0.825 0.702 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
53. smc1al ENSDARG00000058203 8838 1.526 - - - - - - 0.803 - 0.723 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
54. whsc1l1 8544 1.523 - - - - - - 0.817 - 0.706 Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
55. sipa1l2 ENSDARG00000061640 4545 1.522 - - - - - 0.754 - - 0.768 signal-induced proliferation-associated 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-050208-66]
56. HNRNPAB HNRNPAB 22267 1.522 - - - - - - 0.747 - 0.775
57. cdk2ap2 ENSDARG00000103145 8024 1.52 - - - - - - 0.807 - 0.713 cyclin-dependent kinase 2 associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040718-35]
58. zgc:110540 ENSDARG00000054929 2154 1.517 - - - - - - 0.799 - 0.718 zgc:110540 [Source:ZFIN;Acc:ZDB-GENE-050327-77]
59. gnao1b ENSDARG00000036058, ENSDARG00000112730 1951 1.513 - - - - - 0.763 0.750 - - guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b [Source:ZFIN;Acc:ZDB-GENE-040426-1693]
60. eng2b eng2b 865 1.51 - - - - - - - 0.777 0.733
61. ankrd12 ENSDARG00000052419 2579 1.509 - - - - - 0.735 - - 0.774 ankyrin repeat domain 12 [Source:ZFIN;Acc:ZDB-GENE-040426-846]
62. IM:7163548 IM:7163548 6540 1.506 - - - - - 0.742 0.764 - -
63. scamp3 ENSDARG00000016765 540 1.503 - - - - - 0.758 0.745 - - secretory carrier membrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-041114-33]
64. zgc:101846 15202 1.503 - 0.757 - - - - - - 0.746 zgc:101846
65. uspl1 ENSDARG00000034825, ENSDARG00000109866 457 1.496 - - - - - - 0.758 - 0.738 ubiquitin specific peptidase like 1 [Source:ZFIN;Acc:ZDB-GENE-040930-7]
66. brd3b ENSDARG00000100129 6387 1.496 - - - - - 0.748 0.748 - - bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
67. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.496 - - - - - 0.746 - - 0.750 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
68. gemin2 ENSDARG00000015638 886 1.494 0.754 - - - - - 0.740 - - gem (nuclear organelle) associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3756]
69. eif4h ENSDARG00000042252 6742 1.49 0.746 - - - - - - - 0.744 eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
70. ogt.1 ENSDARG00000099455, ENSDARG00000105243 3274 1.489 - - - - - - 0.765 0.724 - O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9631]
71. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 27740 1.488 - - - - - 0.772 - - 0.716 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
72. myef2 ENSDARG00000059398 6050 1.482 - - - - - 0.780 - - 0.702 myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
73. RBM33 RBM33 1954 1.479 - - - - - - 0.772 - 0.707
74. htatip htatip 1553 1.471 - - - - - 0.726 - - 0.745
75. snrpe ENSDARG00000033175 7462 1.47 - - - - - 0.703 0.767 - - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
76. abca5 ENSDARG00000074041 576 1.469 0.713 - - - - - 0.756 - - ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
77. ammecr1 ENSDARG00000012892 14475 1.468 - - - - - 0.718 0.750 - - Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) [Source:ZFIN;Acc:ZDB-GENE-040426-1533]
78. uros ENSDARG00000027491 1147 1.468 - - - - - - 0.706 0.762 - uroporphyrinogen III synthase [Source:ZFIN;Acc:ZDB-GENE-040323-2]
79. foxo3a ENSDARG00000023058 2554 1.465 - - - - - - 0.751 - 0.714 forkhead box O3A [Source:ZFIN;Acc:ZDB-GENE-050116-1]
80. fzd1 ENSDARG00000106062 1581 1.464 - - - - - 0.705 - - 0.759 frizzled class receptor 1 [Source:ZFIN;Acc:ZDB-GENE-990415-219]
81. psmd4b ENSDARG00000023279 2002 1.46 - - - - - 0.708 0.752 - - proteasome 26S subunit, non-ATPase 4b [Source:ZFIN;Acc:ZDB-GENE-050417-96]
82. mrps18c ENSDARG00000069624, ENSDARG00000114200 983 1.446 - - - - - 0.704 0.742 - - mitochondrial ribosomal protein S18C [Source:ZFIN;Acc:ZDB-GENE-060503-609]
83. exosc3 ENSDARG00000098334, ENSDARG00000104246 1287 1.446 0.723 - - - - - 0.723 - - exosome component 3 [Source:ZFIN;Acc:ZDB-GENE-050706-140]
84. zswim5 ENSDARG00000055900 4243 1.442 - - - - - 0.735 - - 0.707 zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
85. TNKS TNKS 2775 1.435 - - - - - - 0.730 - 0.705
86. fam60al 2846 1.434 - - - - - - 0.707 - 0.727 family with sequence similarity 60, member A, like
87. si:ch211-218c6.8 ENSDARG00000092364 1270 1.428 - - - - - - 0.716 0.712 - si:ch211-218c6.8 [Source:ZFIN;Acc:ZDB-GENE-050419-103]
88. hmmr ENSDARG00000021794, ENSDARG00000111088 2009 1.425 - - - - - 0.703 0.722 - - hyaluronan-mediated motility receptor (RHAMM) [Source:ZFIN;Acc:ZDB-GENE-030131-731]
89. ptenb ENSDARG00000056623 5783 1.424 - - - - - 0.710 0.714 - - phosphatase and tensin homolog B [Source:ZFIN;Acc:ZDB-GENE-030616-47]
90. ddx39ab ENSDARG00000015111 11619 1.415 - - - - - 0.710 - - 0.705 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
91. ppp1caa ENSDARG00000003486, ENSDARG00000115977 5931 0.995 - 0.995 - - - - - - - protein phosphatase 1, catalytic subunit, alpha isozyme a [Source:ZFIN;Acc:ZDB-GENE-040516-3]
92. vcp ENSDARG00000020008, ENSDARG00000116074 2284 0.995 - 0.995 - - - - - - - valosin containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-5408]
93. DDX24 ENSDARG00000104708 861 0.995 - 0.995 - - - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 24 [Source:ZFIN;Acc:ZDB-GENE-100716-4]
94. colgalt2 ENSDARG00000014670 1932 0.995 - 0.995 - - - - - - - collagen beta(1-O)galactosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-070222-1]
95. NRD1 NRD1 3486 0.995 - 0.995 - - - - - - -
96. BX324201.1 BX324201.1 3302 0.995 - 0.995 - - - - - - -
97. mcm2 ENSDARG00000102798 8148 0.995 - 0.995 - - - - - - - minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
98. ddx27 ENSDARG00000091831 1471 0.995 - 0.995 - - - - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]
99. SMAD4 SMAD4 3233 0.994 - 0.994 - - - - - - -
100. erbb2 ENSDARG00000026294, ENSDARG00000112475 2704 0.994 - 0.994 - - - - - - - erb-b2 receptor tyrosine kinase 2 [Source:ZFIN;Acc:ZDB-GENE-031118-121]

There are 1154 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA