Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for r3hcc1l

Gene Name Gene ID Reads Annotation
r3hcc1l ENSDARG00000089243 1254 R3H domain and coiled-coil containing 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-4156]










Genes with expression patterns similar to r3hcc1l

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. r3hcc1l ENSDARG00000089243 1254 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 R3H domain and coiled-coil containing 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-4156]
2. dpf2l ENSDARG00000037291, ENSDARG00000112198 2353 2.416 0.790 - - - - 0.821 0.805 - - D4, zinc and double PHD fingers family 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-5132]
3. PHTF2 ENSDARG00000102123, ENSDARG00000114503 898 2.402 - 0.784 - - - 0.836 0.782 - - putative homeodomain transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-040711-4]
4. cdc6 ENSDARG00000009942, ENSDARG00000109602 2540 2.384 - - - 0.708 - 0.897 0.779 - - cell division cycle 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-131]
5. sumo3a ENSDARG00000028119 13447 2.375 - - - 0.796 - 0.790 0.789 - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
6. wdr3 ENSDARG00000011079 1403 2.315 - 0.791 - - 0.801 0.723 - - - WD repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9830]
7. irx3b ENSDARG00000031138 2538 2.228 - 0.772 - - - 0.714 0.742 - - iroquois homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-030131-525]
8. rtca ENSDARG00000002215 3558 2.21 - 0.744 - 0.735 - - 0.731 - - RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
9. mir34 176 2.144 0.709 - - - - 0.718 0.717 - - microRNA 34
10. CABZ01072954.1 CABZ01072954.1 2330 1.771 - 0.888 - - - 0.883 - - -
11. ENSDARG00000086878 ENSDARG00000086878 332 1.743 - - - - 0.875 0.868 - - -
12. tmem5 1630 1.741 - - - - 0.884 0.857 - - - transmembrane protein 5
13. GRIN2B GRIN2B 140 1.738 - - - - 0.882 0.856 - - -
14. si:dkey-183n20.2 si:dkey-183n20.2 210 1.733 - - - - 0.870 0.863 - - -
15. qrich1 ENSDARG00000019797, ENSDARG00000111720, ENSDARG00000113429 1177 1.726 - 0.839 - - - 0.887 - - - glutamine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8204]
16. nup210 ENSDARG00000063333 995 1.71 - - - - 0.857 0.853 - - - nucleoporin 210 [Source:ZFIN;Acc:ZDB-GENE-050208-132]
17. CR626962.1 ENSDARG00000096981 220 1.685 - - - - 0.892 0.793 - - -
18. anxa13l ENSDARG00000013613 631 1.684 - - - - 0.867 0.817 - - - annexin A13, like [Source:ZFIN;Acc:ZDB-GENE-050522-310]
19. mn1b ENSDARG00000079248 882 1.661 - - - - 0.825 0.836 - - - meningioma 1b [Source:ZFIN;Acc:ZDB-GENE-080917-23]
20. pak2b ENSDARG00000018476 4331 1.657 - - - - 0.846 - 0.811 - - p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
21. si:ch211-278j3.3 ENSDARG00000020284 478 1.645 - - - - 0.865 - 0.780 - - si:ch211-278j3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-147]
22. hmg20b ENSDARG00000042045, ENSDARG00000116536 2638 1.631 - 0.750 - - 0.881 - - - - high mobility group 20B [Source:ZFIN;Acc:ZDB-GENE-030131-4258]
23. FP236812.4 FP236812.4 1244 1.631 - 0.800 - - 0.831 - - - -
24. mycla ENSDARG00000006003 1866 1.626 - - - - 0.882 - 0.744 - - MYCL proto-oncogene, bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-040426-2439]
25. tcf7l1b ENSDARG00000007369 2785 1.625 - 0.828 - - - 0.797 - - - transcription factor 7 like 1b [Source:ZFIN;Acc:ZDB-GENE-991110-10]
26. impdh1b ENSDARG00000029524 7472 1.623 - 0.826 - - - 0.797 - - - IMP (inosine 5'-monophosphate) dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030219-206]
27. C22H10orf76 C22H10orf76 1103 1.619 - 0.809 - - - 0.810 - - -
28. sept9b ENSDARG00000103900, ENSDARG00000113442 1495 1.619 - - - - - 0.874 0.745 - - septin 9b [Source:ZFIN;Acc:ZDB-GENE-050327-17]
29. tcta ENSDARG00000044194 1183 1.619 - - - - 0.839 0.780 - - - T cell leukemia translocation altered [Source:ZFIN;Acc:ZDB-GENE-040718-325]
30. TMEM57 TMEM57 260 1.615 - - - - - 0.844 0.771 - -
31. ccar1 ENSDARG00000074759, ENSDARG00000114899 1329 1.614 - 0.743 - - - 0.871 - - - cell division cycle and apoptosis regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-146]
32. rnd1l rnd1l 984 1.612 - 0.865 - - - 0.747 - - -
33. LMLN ENSDARG00000061265 1618 1.605 - 0.747 - - - 0.858 - - - leishmanolysin-like (metallopeptidase M8 family) [Source:ZFIN;Acc:ZDB-GENE-081104-298]
34. MSL1_1 MSL1_1 2365 1.604 - - - - 0.747 0.857 - - -
35. DTX4 ENSDARG00000076302 2642 1.603 - - - - 0.769 0.834 - - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
36. tmsb ENSDARG00000054911 6411 1.602 - 0.808 - - - 0.794 - - - thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
37. LINGO2 LINGO2 300 1.601 - - - - - 0.857 0.744 - -
38. prr18 ENSDARG00000093768 409 1.598 - - - - - 0.827 0.771 - - proline rich 18 [Source:ZFIN;Acc:ZDB-GENE-081107-6]
39. nrn1a ENSDARG00000071860 1311 1.596 - - - - 0.862 0.734 - - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
40. CACFD1 ENSDARG00000090818 1298 1.595 - - - - - 0.793 0.802 - - calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1365]
41. ddx42 ENSDARG00000037928 1659 1.595 - - - - 0.859 0.736 - - - DEAD (Asp-Glu-Ala-Asp) box helicase 42 [Source:ZFIN;Acc:ZDB-GENE-050706-53]
42. FP102801.1_1 FP102801.1_1 238 1.595 - - - - - 0.865 0.730 - -
43. TNRC6B ENSDARG00000074161 2464 1.593 - - - - 0.871 0.722 - - - trinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
44. VDR VDR 489 1.592 0.745 - - - 0.847 - - - -
45. atcaya ENSDARG00000071678 344 1.589 - - - - - 0.840 0.749 - - ataxia, cerebellar, Cayman type a [Source:ZFIN;Acc:ZDB-GENE-070705-185]
46. CR339053.3 CR339053.3 244 1.588 0.721 - - - - 0.867 - - -
47. gabpb2a ENSDARG00000007943 1570 1.587 - - - - - 0.876 0.711 - - GA binding protein transcription factor subunit beta 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5733]
48. ENSDARG00000077141 ENSDARG00000077141 227 1.584 - 0.709 - - - 0.875 - - -
49. papolg ENSDARG00000012141 1445 1.579 - - - - 0.835 - - - 0.744 poly(A) polymerase gamma [Source:ZFIN;Acc:ZDB-GENE-040426-1256]
50. elk1 ENSDARG00000078066 414 1.578 - - - 0.725 - 0.853 - - - ELK1, member of ETS oncogene family [Source:ZFIN;Acc:ZDB-GENE-090529-5]
51. zcchc8 ENSDARG00000034982 3406 1.578 - - - 0.718 0.860 - - - - zinc finger, CCHC domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-060526-6]
52. dbx1b ENSDARG00000001859, ENSDARG00000113468 810 1.578 - - - - 0.871 - 0.707 - - developing brain homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-000128-11]
53. mybbp1a ENSDARG00000078214 2458 1.573 - 0.749 - - 0.824 - - - - MYB binding protein (P160) 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9864]
54. KBTBD2 ENSDARG00000087226 707 1.573 - - - 0.741 0.832 - - - - kelch repeat and BTB (POZ) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060929-1262]
55. adarb1a ENSDARG00000041609 476 1.572 - - - - - 0.864 0.708 - - adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
56. dtna ENSDARG00000031015 1746 1.572 - 0.789 - - - 0.783 - - - dystrobrevin, alpha [Source:ZFIN;Acc:ZDB-GENE-070117-2]
57. setd3 ENSDARG00000016513 1507 1.571 - 0.768 - - - 0.803 - - - SET domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9137]
58. phgdh ENSDARG00000001873 8325 1.571 - 0.765 - - - 0.806 - - - phosphoglycerate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030131-647]
59. tfdp1a ENSDARG00000019293, ENSDARG00000111589 1118 1.57 - 0.786 - - - - 0.784 - - transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
60. inhbb ENSDARG00000040777 2141 1.567 - - - 0.769 0.798 - - - - inhibin subunit beta B [Source:ZFIN;Acc:ZDB-GENE-990415-2]
61. MRPL21 ENSDARG00000003846 3244 1.566 - 0.790 - - 0.776 - - - - mitochondrial ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-061027-183]
62. C8H5orf51 C8H5orf51 1199 1.56 - - - - 0.854 0.706 - - -
63. zmiz1a ENSDARG00000074502 3920 1.557 - 0.747 - - - - 0.810 - - zinc finger, MIZ-type containing 1a [Source:ZFIN;Acc:ZDB-GENE-080220-27]
64. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 1.557 - - - 0.712 - 0.845 - - - protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
65. ZNF576 ZNF576 1447 1.555 - - - 0.721 0.834 - - - -
66. rae1 ENSDARG00000007196, ENSDARG00000113905 3321 1.554 - - - - 0.716 0.838 - - - ribonucleic acid export 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1029]
67. ptbp2b ENSDARG00000015901 2458 1.553 - - - - - 0.819 0.734 - - polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
68. CR388231.3 ENSDARG00000105601 2404 1.552 - 0.701 - - - - 0.851 - -
69. mcm6 ENSDARG00000057683, ENSDARG00000113317 6591 1.551 - 0.769 - - - 0.782 - - - minichromosome maintenance complex component 6 [Source:ZFIN;Acc:ZDB-GENE-030909-6]
70. tspan5b ENSDARG00000070449 1056 1.549 - - - - 0.839 - - 0.710 - tetraspanin 5b [Source:ZFIN;Acc:ZDB-GENE-041212-12]
71. utp3 ENSDARG00000056720 922 1.547 - 0.735 - - - 0.812 - - - UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040912-163]
72. zfr ENSDARG00000027109, ENSDARG00000116459 4171 1.544 - 0.826 - - - - 0.718 - - zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
73. itm2cb ENSDARG00000039650 716 1.544 - - - - - 0.831 0.713 - - integral membrane protein 2Cb [Source:ZFIN;Acc:ZDB-GENE-030131-7806]
74. taf7 ENSDARG00000019572 1305 1.54 - 0.815 - - - 0.725 - - - TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-020419-18]
75. ruvbl1 ENSDARG00000002591 2381 1.539 - 0.708 - - - 0.831 - - - RuvB-like AAA ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-030109-2]
76. si:dkeyp-33e11.2 si:dkeyp-33e11.2 232 1.538 - - - - - 0.756 0.782 - -
77. fam96b 2255 1.538 - 0.726 - - - 0.812 - - - family with sequence similarity 96, member B
78. stox2a ENSDARG00000070162 1620 1.538 - - - - - 0.805 0.733 - - storkhead box 2a [Source:ZFIN;Acc:ZDB-GENE-090313-101]
79. actr10 ENSDARG00000038432 1598 1.537 - 0.709 - - - 0.828 - - - ARP10 actin related protein 10 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-768]
80. thsd7ba ENSDARG00000095022 231 1.536 - - - - - 0.835 0.701 - - thrombospondin, type I, domain containing 7Ba [Source:ZFIN;Acc:ZDB-GENE-070621-2]
81. pomp ENSDARG00000032296 4439 1.536 - 0.818 - - 0.718 - - - - proteasome maturation protein [Source:ZFIN;Acc:ZDB-GENE-040801-10]
82. PLEKHM3 ENSDARG00000030633 496 1.534 - - - 0.731 - 0.803 - - - pleckstrin homology domain containing, family M, member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-382]
83. rnd3a ENSDARG00000076799 4705 1.533 - 0.720 - 0.813 - - - - - Rho family GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-010319-40]
84. sh3glb2b ENSDARG00000035470, ENSDARG00000109833 719 1.53 - - - - - 0.792 0.738 - - SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
85. mex3b ENSDARG00000058369 1867 1.527 - - - - - 0.768 0.759 - - mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
86. BX000701.2 ENSDARG00000105074 1123 1.526 - - - - 0.825 0.701 - - - gastrula zinc finger protein XlCGF7.1-like [Source:NCBI gene;Acc:101884528]
87. mdkb ENSDARG00000020708 5393 1.524 - 0.753 - - - 0.771 - - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
88. CT030046.1 CT030046.1 190 1.523 - - - - - 0.815 0.708 - -
89. CLSPN 2054 1.522 0.716 - - - 0.806 - - - - claspin
90. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 1.52 - - - - - 0.791 0.729 - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
91. sephs1 ENSDARG00000058292 3347 1.52 - - - - - - 0.762 - 0.758 selenophosphate synthetase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3670]
92. MIS12 ENSDARG00000026454 649 1.519 - 0.728 - - - 0.791 - - - MIS12 kinetochore complex component [Source:ZFIN;Acc:ZDB-GENE-040426-1372]
93. uchl3 ENSDARG00000030177, ENSDARG00000109434 2843 1.518 - - - - - 0.796 0.722 - - ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) [Source:ZFIN;Acc:ZDB-GENE-050522-158]
94. ube2t ENSDARG00000063285 716 1.516 0.718 - - - 0.798 - - - - ubiquitin-conjugating enzyme E2T (putative) [Source:ZFIN;Acc:ZDB-GENE-061013-547]
95. ptpn9b ENSDARG00000073902 755 1.514 - - - - - 0.766 0.748 - - protein tyrosine phosphatase, non-receptor type 9, b [Source:ZFIN;Acc:ZDB-GENE-090313-52]
96. hdgfrp2 7462 1.511 - 0.776 - - - 0.735 - - - hepatoma-derived growth factor-related protein 2, transcript variant X1
97. sp1 ENSDARG00000088347 1697 1.51 - - - - 0.747 0.763 - - - sp1 transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-2829]
98. vat1 ENSDARG00000056481, ENSDARG00000111382 7389 1.509 - 0.792 - - - - 0.717 - - vesicle amine transport 1 [Source:ZFIN;Acc:ZDB-GENE-030616-178]
99. ROBO3_1 ROBO3_1 468 1.509 - - - - - 0.792 0.717 - -
100. zgc:65772 zgc:65772 2092 1.508 - - - - 0.760 - 0.748 - -

There are 2308 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA