Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for puf60a

Gene Name Gene ID Reads Annotation
puf60a ENSDARG00000032175 5618 poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]










Genes with expression patterns similar to puf60a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. puf60a ENSDARG00000032175 5618 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
2. tgif1 ENSDARG00000059337 4020 3.987 - 0.804 0.760 - - 0.866 0.820 - 0.737 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
3. ncapd2 ENSDARG00000005058 2819 3.343 - - 0.782 - - - 0.835 0.990 0.736 non-SMC condensin I complex, subunit D2 [Source:ZFIN;Acc:ZDB-GENE-050506-59]
4. hnrnpub ENSDARG00000004735 16496 3.301 - - - 0.823 0.817 - 0.806 - 0.855 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
5. rbb4 rbb4 15541 3.263 - - 0.797 - - 0.876 0.786 - 0.804
6. lypla2 ENSDARG00000053656 8971 3.261 - 0.823 - - - 0.755 0.870 - 0.813 lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
7. smarca5 ENSDARG00000052348 15433 3.154 - 0.704 - - - - 0.734 0.893 0.823 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
8. rtca ENSDARG00000002215 3558 3.096 - 0.782 0.740 - - - 0.710 - 0.864 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
9. ipo7 ENSDARG00000035751 7095 3.059 - 0.768 - 0.725 - - 0.826 - 0.740 importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
10. aspm ENSDARG00000103754 5708 3.052 - - 0.725 0.799 0.767 - 0.761 - - abnormal spindle microtubule assembly [Source:ZFIN;Acc:ZDB-GENE-050208-620]
11. SNRPG ENSDARG00000099667 18697 3.043 - 0.704 - 0.751 - - 0.756 - 0.832 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
12. tmpob ENSDARG00000022978 8121 3.026 - - 0.724 0.743 - - 0.730 - 0.829 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
13. CR936437.1 CR936437.1 6465 2.988 - - 0.730 - 0.770 - 0.701 - 0.787
14. bcas2 ENSDARG00000043631 1971 2.934 - 0.803 - - - 0.716 0.702 - 0.713 BCAS2, pre-mRNA processing factor [Source:ZFIN;Acc:ZDB-GENE-030408-5]
15. ppp4ca ENSDARG00000070570 8395 2.55 - 0.800 0.782 - - - - 0.968 - protein phosphatase 4, catalytic subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-4433]
16. snrpd3l ENSDARG00000076283 7655 2.538 - - - - - 0.804 0.901 - 0.833 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
17. neo1 neo1 4056 2.516 - 0.757 - - - - - 0.962 0.797
18. creb1a ENSDARG00000053586 5068 2.479 - 0.772 - - - - - 0.879 0.828 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
19. si:dkeyp-44a8.2 ENSDARG00000092493 8308 2.471 - - - - 0.778 - 0.892 - 0.801 si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
20. hdac3 ENSDARG00000037514, ENSDARG00000110316 1985 2.465 - - - - - 0.750 - 0.931 0.784 histone deacetylase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-847]
21. lbr ENSDARG00000014013 4835 2.457 - - - - - - 0.726 0.969 0.762 lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
22. prmt1 ENSDARG00000010246 11311 2.446 - 0.832 0.794 - - - 0.820 - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
23. Sep-06 Sep-06 5465 2.442 - 0.813 - - - - 0.868 - 0.761
24. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 2.422 - - - 0.728 - - 0.855 - 0.839 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
25. egln1 egln1 3746 2.418 - 0.719 - - - - 0.731 0.968 -
26. snrpc ENSDARG00000009871 9567 2.417 - - - 0.721 - - 0.842 - 0.854 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
27. dbt ENSDARG00000101561, ENSDARG00000110773 1537 2.413 - 0.717 - - - 0.716 - 0.980 - dihydrolipoamide branched chain transacylase E2 [Source:ZFIN;Acc:ZDB-GENE-050320-85]
28. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 2.377 - - - 0.815 0.707 - 0.855 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
29. pum1 ENSDARG00000099256 5017 2.374 - 0.788 - - - - 0.803 - 0.783 pumilio RNA-binding family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2074]
30. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 2.374 - - 0.752 - - - 0.757 - 0.865 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
31. hnrpl 6412 2.356 - - 0.765 - - - 0.788 - 0.803 heterogeneous nuclear ribonucleoprotein L, transcript variant X1
32. efnb2a ENSDARG00000020164 5262 2.349 - 0.814 - 0.743 - - - - 0.792 ephrin-B2a [Source:ZFIN;Acc:ZDB-GENE-990415-67]
33. pnisr ENSDARG00000069855, ENSDARG00000116449 3465 2.348 - 0.798 - - - - 0.781 - 0.769 PNN-interacting serine/arginine-rich protein [Source:ZFIN;Acc:ZDB-GENE-030131-362]
34. eif4h ENSDARG00000042252 6742 2.341 - - - 0.716 - - 0.822 - 0.803 eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
35. hcfc1b ENSDARG00000012519 3633 2.33 - 0.718 - 0.775 - - 0.837 - - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
36. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 2.33 - - 0.819 0.705 - - - - 0.806 serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
37. dnaja2l ENSDARG00000010745 2367 2.323 - 0.746 0.709 - - - - - 0.868 DnaJ (Hsp40) homolog, subfamily A, member 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-2884]
38. pak2b ENSDARG00000018476 4331 2.317 - 0.758 - - - - 0.839 - 0.720 p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
39. rrm1 ENSDARG00000014017 7296 2.317 - - - 0.853 - - 0.762 - 0.702 ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
40. eif2s1a ENSDARG00000005827 5992 2.315 - 0.785 - - - 0.737 - - 0.793 eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
41. sf3a3 ENSDARG00000100114 4511 2.305 - 0.734 - - - 0.821 0.750 - - splicing factor 3a, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040908-1]
42. kmt2cb ENSDARG00000075560 4816 2.294 - 0.794 - - - 0.782 0.718 - - lysine (K)-specific methyltransferase 2Cb [Source:ZFIN;Acc:ZDB-GENE-070705-340]
43. ubr5 ENSDARG00000018192 9267 2.289 - 0.780 0.729 - - 0.780 - - - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
44. ddx19 ENSDARG00000005699 4602 2.286 - - 0.766 - - - 0.771 - 0.749 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
45. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 2.284 - - 0.740 - - 0.755 0.789 - - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
46. hmgb3a ENSDARG00000056725 15668 2.284 - - - - 0.721 - 0.794 - 0.769 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
47. smc1al ENSDARG00000058203 8838 2.284 - - 0.719 - - - 0.743 - 0.822 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
48. snrpf ENSDARG00000105037 10241 2.284 - 0.709 - 0.747 - - 0.828 - - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
49. FP016176.1 FP016176.1 7030 2.283 - - - - - - 0.712 0.850 0.721
50. kpnb3 ENSDARG00000040245 7967 2.272 - 0.763 - - - - 0.793 0.716 - karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
51. dpysl3 ENSDARG00000002587 4381 2.265 - 0.702 - - - - - 0.802 0.761 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
52. fen1 ENSDARG00000011404 3358 2.265 - 0.736 0.720 - - - 0.809 - - flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
53. usp7 ENSDARG00000073710 7017 2.264 - - - - - 0.707 0.778 - 0.779 ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
54. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 2.262 - 0.738 - - - - 0.763 - 0.761 ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
55. prpsap2 ENSDARG00000019326 1463 2.249 - - 0.713 - - - 0.723 - 0.813 phosphoribosyl pyrophosphate synthetase-associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2077]
56. mn1b ENSDARG00000079248 882 2.247 - 0.728 - - - - 0.780 - 0.739 meningioma 1b [Source:ZFIN;Acc:ZDB-GENE-080917-23]
57. kif22 ENSDARG00000102624 3694 2.246 - - 0.732 - - - 0.728 - 0.786 kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
58. fzd3a ENSDARG00000021664 1958 2.244 - - 0.734 0.749 - - - - 0.761 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
59. smek1 ENSDARG00000042187 3509 2.238 - - - - - 0.737 0.752 - 0.749 SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:ZFIN;Acc:ZDB-GENE-030131-3958]
60. fgfr2 ENSDARG00000058115 6743 2.235 - - 0.717 - 0.760 - - - 0.758 fibroblast growth factor receptor 2 [Source:ZFIN;Acc:ZDB-GENE-030323-1]
61. gipc1 ENSDARG00000104483 2913 2.232 - 0.738 0.788 - - - 0.706 - - GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
62. ck2a1 ck2a1 3749 2.228 - 0.778 - - - - 0.712 - 0.738
63. naa40 ENSDARG00000024109, ENSDARG00000090570 4759 2.227 - - - 0.749 - - 0.708 - 0.770 N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050417-105]
64. AGO1 ENSDARG00000092644 4521 2.221 - 0.783 0.707 - - - - - 0.731 argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
65. fam60al 2846 2.217 - - 0.724 - - - 0.759 - 0.734 family with sequence similarity 60, member A, like
66. sf3b5 ENSDARG00000016855 4015 2.207 - 0.740 0.739 - - - 0.728 - - splicing factor 3b, subunit 5 [Source:ZFIN;Acc:ZDB-GENE-040718-181]
67. cdca8 ENSDARG00000043137 7541 2.207 - - - 0.757 0.734 - 0.716 - - cell division cycle associated 8 [Source:ZFIN;Acc:ZDB-GENE-041114-171]
68. setd8a 2549 2.202 - - - - - - 0.743 0.745 0.714 SET domain containing (lysine methyltransferase) 8a
69. si:ch211-198a12.6 ENSDARG00000074624, ENSDARG00000114808 8911 2.196 - 0.701 - - - 0.758 0.737 - - si:ch211-198a12.6 [Source:ZFIN;Acc:ZDB-GENE-030131-1683]
70. sp4 ENSDARG00000005186 2904 2.188 - 0.721 - - - 0.708 - - 0.759 sp4 transcription factor [Source:ZFIN;Acc:ZDB-GENE-031202-3]
71. ZNF646 ENSDARG00000061424 1549 2.184 - - 0.741 - - - 0.710 - 0.733 zinc finger protein 646 [Source:ZFIN;Acc:ZDB-GENE-160627-3]
72. kdm2aa ENSDARG00000059653 2389 2.181 - 0.740 - - - - 0.724 - 0.717 lysine (K)-specific demethylase 2Aa [Source:ZFIN;Acc:ZDB-GENE-061215-144]
73. matr3l1.1_1 ENSDARG00000000394, ENSDARG00000001162 1860 2.177 - 0.709 - - - - 0.714 - 0.754 matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
74. arnt2 ENSDARG00000103697 5731 2.164 - - 0.708 - - - 0.714 - 0.742 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
75. pou3f3a ENSDARG00000042032 2835 2.161 - - - 0.718 - - 0.727 - 0.716 POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
76. setd1a ENSDARG00000060030 874 2.151 - 0.714 - - - - 0.706 - 0.731 SET domain containing 1A [Source:ZFIN;Acc:ZDB-GENE-080521-4]
77. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 2.144 - - 0.714 - 0.712 - - - 0.718 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
78. esco2 ENSDARG00000014685 1971 2.141 - - 0.719 - - - 0.716 - 0.706 establishment of sister chromatid cohesion N-acetyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050913-156]
79. syncripl ENSDARG00000026723 3889 1.826 - - - - - - 0.884 0.942 - synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
80. hs2st1a ENSDARG00000099478 864 1.773 - - - - - - 0.786 0.987 - heparan sulfate 2-O-sulfotransferase 1a [Source:ZFIN;Acc:ZDB-GENE-070112-2312]
81. wu:fb17g07 wu:fb17g07 10567 1.763 - - - - - - 0.858 0.905 -
82. arhgap12b ENSDARG00000026482, ENSDARG00000109973 1142 1.759 - - - - - - 0.794 0.965 - Rho GTPase activating protein 12b [Source:ZFIN;Acc:ZDB-GENE-040426-1727]
83. fam46c 1913 1.751 - 0.770 - - - - - 0.981 - family with sequence similarity 46, member C
84. prnprs3 ENSDARG00000003705 1854 1.739 - - - - - - 0.789 0.950 - prion protein, related sequence 3 [Source:ZFIN;Acc:ZDB-GENE-041221-3]
85. emc2 ENSDARG00000003308, ENSDARG00000114541 7141 1.736 - 0.951 - - - - 0.785 - - ER membrane protein complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040625-82]
86. snx27b ENSDARG00000016977 2768 1.711 - - - - - - 0.727 0.984 - sorting nexin family member 27b [Source:ZFIN;Acc:ZDB-GENE-040426-1529]
87. rasal2 ENSDARG00000036257 3223 1.705 - - 0.740 - - - - 0.965 - RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
88. arfgap2 ENSDARG00000067601 6801 1.702 - 0.788 - - - - - 0.914 - ADP-ribosylation factor GTPase activating protein 2 [Source:ZFIN;Acc:ZDB-GENE-051120-177]
89. scaf4a ENSDARG00000077093 2408 1.701 - 0.718 - - - - - 0.983 - SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
90. slc27a1a ENSDARG00000006240, ENSDARG00000109799 1471 1.696 - - - - - - 0.735 0.961 - solute carrier family 27 (fatty acid transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050320-112]
91. inip ENSDARG00000028523 1925 1.693 - - - - - - - 0.969 0.724 ints3 and nabp interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-961]
92. hat1 ENSDARG00000034916 5712 1.692 - - - 0.801 - - - 0.891 - histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
93. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 1.692 - - 0.708 - - - - 0.984 - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
94. uros ENSDARG00000027491 1147 1.686 - 0.734 - - - - - 0.952 - uroporphyrinogen III synthase [Source:ZFIN;Acc:ZDB-GENE-040323-2]
95. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.686 - - - - - - 0.839 - 0.847 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
96. slit3 ENSDARG00000034268, ENSDARG00000111488, ENSDARG00000115194 3999 1.683 - 0.732 - - - - - 0.951 - slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
97. HNRNPAB HNRNPAB 22267 1.675 - - - - - - 0.866 - 0.809
98. si:ch73-21k16.6 si:ch73-21k16.6 4896 1.675 - 0.829 - - - - 0.846 - -
99. sumo3a ENSDARG00000028119 13447 1.67 - - - - - - 0.856 - 0.814 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
100. CDIP1 ENSDARG00000076118 1294 1.669 - - - - - - 0.789 0.880 - cell death-inducing p53 target 1 [Source:ZFIN;Acc:ZDB-GENE-070720-18]

There are 1927 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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