Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ptx3b

Gene Name Gene ID Reads Annotation
ptx3b ENSDARG00000079515 10 pentraxin 3, long b [Source:ZFIN;Acc:ZDB-GENE-081104-385]










Genes with expression patterns similar to ptx3b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ptx3b ENSDARG00000079515 10 7 1.000 1.000 1.000 - 1.000 1.000 1.000 1.000 - pentraxin 3, long b [Source:ZFIN;Acc:ZDB-GENE-081104-385]
2. ptger4a ENSDARG00000059236 13 2.673 0.959 - - - - 0.843 0.871 - - prostaglandin E receptor 4 (subtype EP4) a [Source:ZFIN;Acc:ZDB-GENE-060222-1]
3. npsn ENSDARG00000010423 768 2.501 0.730 0.885 - - - - 0.886 - - nephrosin [Source:ZFIN;Acc:ZDB-GENE-040420-2]
4. CLDN10 CLDN10 38 2.445 - - 0.878 - - 0.793 0.774 - -
5. si:dkey-103e21.5 ENSDARG00000091926, ENSDARG00000110300 12 2 - 1.000 1.000 - - - - - - si:dkey-103e21.5 [Source:ZFIN;Acc:ZDB-GENE-060526-186]
6. BX324215.3 BX324215.3 12 1.977 - 1.000 - - 0.977 - - - -
7. si:ch211-102g22.3 si:ch211-102g22.3 2 1.977 - 1.000 - - 0.977 - - - -
8. ppp1r42 ENSDARG00000057632 32 1.949 - 1.000 - - 0.949 - - - - protein phosphatase 1, regulatory subunit 42 [Source:ZFIN;Acc:ZDB-GENE-040704-43]
9. PROC PROC 11 1.939 0.939 1.000 - - - - - - -
10. cbln4 ENSDARG00000061240 67 1.939 0.939 1.000 - - - - - - - cerebellin 4 precursor [Source:ZFIN;Acc:ZDB-GENE-080204-58]
11. si:dkey-16p6.1_1 ENSDARG00000088245, ENSDARG00000089179, ENSDARG00000090033, ENSDARG00000090192, ENSDARG00000090734, ENSDARG00000091746, ENSDARG00000098189, ENSDARG00000098515, ENSDARG00000099262, ENSDARG00000100061, ENSDARG00000100164, ENSDARG00000101351, ENSDARG00000101689, ENSDARG00000101828, ENSDARG00000102212, ENSDARG00000104416, ENSDARG00000104897, ENSDARG00000105266, ENSDARG00000111518 37 1.939 0.939 1.000 - - - - - - - si:dkey-16p6.1 [Source:ZFIN;Acc:ZDB-GENE-081103-43]
12. ifitm5 ENSDARG00000105153 132 1.939 0.939 1.000 - - - - - - - interferon induced transmembrane protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-8970]
13. CIT_1 CIT_1 6 1.939 0.939 1.000 - - - - - - -
14. FBXL21 FBXL21 6 1.939 0.939 1.000 - - - - - - -
15. si:dkey-167i21.4 si:dkey-167i21.4 12 1.935 - 1.000 0.935 - - - - - -
16. FAM124B ENSDARG00000087489 16 1.903 0.939 - - - 0.964 - - - - family with sequence similarity 124B [Source:ZFIN;Acc:ZDB-GENE-130327-1]
17. fam154b fam154b 2 1.871 - 1.000 - - - - 0.871 - -
18. ccdc147 ccdc147 39 1.871 - 1.000 - - - - 0.871 - -
19. CABZ01054405.2 CABZ01054405.2 46 1.871 - 1.000 - - - - 0.871 - -
20. VDAC3 ENSDARG00000003695 34 1.871 - 1.000 - - - - 0.871 - - voltage-dependent anion channel 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2380]
21. zgc:92249 14 1.871 - 1.000 - - - - 0.871 - - zgc:92249
22. mettl8 ENSDARG00000017359 36 1.871 - 1.000 - - - - 0.871 - - methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
23. si:dkey-211g8.6 ENSDARG00000063088 19 1.868 0.939 - - - 0.929 - - - - si:dkey-211g8.6 [Source:ZFIN;Acc:ZDB-GENE-060503-813]
24. ankrd1b ENSDARG00000076192 204 1.858 - 1.000 - - - 0.858 - - - ankyrin repeat domain 1b (cardiac muscle) [Source:ZFIN;Acc:ZDB-GENE-070820-13]
25. tmprss13b ENSDARG00000077573 47 1.856 - - - - 0.985 - 0.871 - - transmembrane serine protease 13b [Source:ZFIN;Acc:ZDB-GENE-090309-2]
26. ZC3H12A ENSDARG00000005271 5 1.849 - 1.000 - - - 0.849 - - - zinc finger CCCH-type containing 12A [Source:ZFIN;Acc:ZDB-GENE-110411-6]
27. CABZ01069020.1 ENSDARG00000105806 19 1.843 - 1.000 - - - 0.843 - - - si:cabz01069020.1 [Source:NCBI gene;Acc:100332930]
28. dzip1l ENSDARG00000074265 61 1.843 - 1.000 - - - - 0.843 - - DAZ interacting zinc finger protein 1-like [Source:ZFIN;Acc:ZDB-GENE-051113-196]
29. si:dkey-182i3.9 ENSDARG00000096575 56 1.843 - 1.000 - - - 0.843 - - - si:dkey-182i3.9 [Source:ZFIN;Acc:ZDB-GENE-121214-310]
30. si:ch73-386o14.1 si:ch73-386o14.1 82 1.836 0.939 - - - - - 0.897 - -
31. RUNDC3A RUNDC3A 204 1.821 - 0.953 0.868 - - - - - -
32. sh3bp4 ENSDARG00000030104, ENSDARG00000109621 51 1.819 0.959 - - - - - 0.860 - - SH3-domain binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-081104-509]
33. prlrb ENSDARG00000045955 12 1.81 0.939 - - - - - 0.871 - - prolactin receptor b [Source:ZFIN;Acc:ZDB-GENE-070705-155]
34. si:dkey-85k15.4 ENSDARG00000095047 25 1.81 0.939 - - - - - 0.871 - - si:dkey-85k15.4 [Source:ZFIN;Acc:ZDB-GENE-100922-242]
35. TMEM27 TMEM27 261 1.809 0.953 - - - - - 0.856 - -
36. CABZ01073380.1 CABZ01073380.1 5 1.8 - 1.000 - - 0.800 - - - -
37. fhl2b ENSDARG00000003991 32 1.789 0.959 - - - - - 0.830 - - four and a half LIM domains 2b [Source:ZFIN;Acc:ZDB-GENE-041010-121]
38. ATP5J_1 ATP5J_1 15 1.783 - - - - 0.985 0.798 - - -
39. slc6a14 ENSDARG00000029866 61 1.779 - - - - - 0.843 0.936 - - solute carrier family 6 (amino acid transporter), member 14 [Source:ZFIN;Acc:ZDB-GENE-130411-2]
40. bckdhb ENSDARG00000014676 17 1.757 - - - - 0.886 - 0.871 - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030124-2]
41. tmc4 ENSDARG00000031757 30 1.755 0.939 - - - - - 0.816 - - transmembrane channel-like 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7489]
42. si:dkey-14d8.2 38 1.748 - 1.000 0.748 - - - - - - si:dkey-14d8.2
43. BX571714.1 ENSDARG00000114727 243 1.747 - - - - - 0.883 0.864 - - SET domain containing 1A [Source:NCBI gene;Acc:556535]
44. ahdc1 ENSDARG00000093453 233 1.733 0.939 0.794 - - - - - - - AT hook, DNA binding motif, containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-584]
45. gpr155a ENSDARG00000090804 27 1.732 - 0.889 - - - 0.843 - - - G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
46. nsdhl ENSDARG00000099315 63 1.73 0.730 1.000 - - - - - - - NAD(P) dependent steroid dehydrogenase-like [Source:ZFIN;Acc:ZDB-GENE-050417-163]
47. ERICH2 ENSDARG00000107534 160 1.726 - - - - - 0.752 0.974 - - glutamate-rich 2 [Source:ZFIN;Acc:ZDB-GENE-131231-2]
48. pole2 ENSDARG00000100028 42 1.719 0.719 1.000 - - - - - - - polymerase (DNA directed), epsilon 2 [Source:ZFIN;Acc:ZDB-GENE-020419-16]
49. tdrd5 ENSDARG00000071450 25 1.719 0.848 - - - - - 0.871 - - tudor domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-050208-502]
50. CABZ01090303.1 CABZ01090303.1 2 1.718 - 1.000 - - - - - 0.718 -
51. st6galnac1.2 ENSDARG00000043816 51 1.714 - - - - - 0.843 0.871 - - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-041014-161]
52. zgc:193811 ENSDARG00000076745 72 1.709 - 0.903 - - - 0.806 - - - zgc:193811 [Source:ZFIN;Acc:ZDB-GENE-081022-43]
53. map3k19 ENSDARG00000094272 59 1.703 0.820 - - - - - 0.883 - - mitogen-activated protein kinase kinase kinase 19 [Source:ZFIN;Acc:ZDB-GENE-081104-140]
54. hk2 ENSDARG00000101482, ENSDARG00000116757 92 1.703 - - - - - 1.000 0.703 - - hexokinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2017]
55. si:dkey-105h11.2 13 1.703 - - - - - 0.843 0.860 - - si:dkey-105h11.2
56. alx1 ENSDARG00000062824, ENSDARG00000110530, ENSDARG00000115230 243 1.702 - 1.000 - - - 0.702 - - - ALX homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-050419-191]
57. CABZ01062083.1 CABZ01062083.1 40 1.694 0.939 - - - - - 0.755 - -
58. CABZ01085054.1 CABZ01085054.1 20 1.679 - 0.808 - - - - 0.871 - -
59. glis3 ENSDARG00000069726 59 1.677 0.896 - - - - 0.781 - - - GLIS family zinc finger 3 [Source:ZFIN;Acc:ZDB-GENE-070112-2232]
60. tchp ENSDARG00000035605 1695 1.661 - 0.851 - - - - 0.810 - - trichoplein, keratin filament binding [Source:ZFIN;Acc:ZDB-GENE-060421-3368]
61. GTF3A GTF3A 6 1.657 0.939 - - - - - - 0.718 -
62. morn2 ENSDARG00000071360 44 1.657 - 0.714 - - - 0.943 - - - MORN repeat containing 2 [Source:ZFIN;Acc:ZDB-GENE-060825-230]
63. zgc:162144 ENSDARG00000037603, ENSDARG00000109982 11 1.655 - - - - 0.812 0.843 - - - zgc:162144 [Source:ZFIN;Acc:ZDB-GENE-030131-7630]
64. hsd3b1 ENSDARG00000069926 35 1.65 0.939 - - - - - - 0.711 - hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 [Source:ZFIN;Acc:ZDB-GENE-081105-30]
65. manba ENSDARG00000008238 25 1.645 - - - - 0.774 - 0.871 - - mannosidase, beta A, lysosomal [Source:ZFIN;Acc:ZDB-GENE-040426-721]
66. ugt5d1 ENSDARG00000002394 5 1.64 - - - - - 0.769 0.871 - - UDP glucuronosyltransferase 5 family, polypeptide D1 [Source:ZFIN;Acc:ZDB-GENE-091118-36]
67. LINS LINS 42 1.636 - - 0.851 - - 0.785 - - -
68. zgc:66432 zgc:66432 16 1.631 - - 0.788 - - 0.843 - - -
69. si:ch73-222h13.1 ENSDARG00000087107 16 1.629 - - - - - 0.769 0.860 - - si:ch73-222h13.1 [Source:ZFIN;Acc:ZDB-GENE-090313-144]
70. BBX ENSDARG00000012699 79 1.625 - - - - 0.754 - 0.871 - - bobby sox homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-091204-306]
71. mfsd6l ENSDARG00000014761 60 1.623 - - 0.752 - - - 0.871 - - major facilitator superfamily domain containing 6-like [Source:ZFIN;Acc:ZDB-GENE-040801-105]
72. e2f5 ENSDARG00000038812 388 1.613 - - - - - 0.829 0.784 - - E2F transcription factor 5 [Source:ZFIN;Acc:ZDB-GENE-030828-3]
73. ccl-c5a ccl-c5a 217 1.61 - - - - - 0.751 0.859 - -
74. tbx21 ENSDARG00000004473, ENSDARG00000115643 30 1.608 - 0.737 - - - - 0.871 - - T-box 21 [Source:ZFIN;Acc:ZDB-GENE-080104-3]
75. RNaseP_nuc_1 RNaseP_nuc_1 19 1.601 0.730 - - - - - 0.871 - -
76. ANKRD52 ANKRD52 78 1.59 0.878 0.712 - - - - - - -
77. si:dkey-176g4.5 si:dkey-176g4.5 4 1.589 - - - - - - 0.871 0.718 -
78. C1S_1 C1S_1 11 1.585 - 0.714 - - - - 0.871 - -
79. star ENSDARG00000006137 149 1.58 - - - - - - 0.871 0.709 - steroidogenic acute regulatory protein [Source:ZFIN;Acc:ZDB-GENE-001120-3]
80. FAM183B FAM183B 25 1.579 - - - - - 0.802 0.777 - -
81. BEND2 BEND2 92 1.559 - - 0.830 - 0.729 - - - -
82. plcg2 ENSDARG00000068763 102 1.558 0.731 - - - - 0.827 - - - phospholipase C, gamma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9532]
83. slc12a1 ENSDARG00000098096 526 1.557 - - - - - 0.848 0.709 - - solute carrier family 12 (sodium/potassium/chloride transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-080130-3]
84. myct1 myct1 217 1.552 0.702 - - - - - 0.850 - -
85. TMEM173 ENSDARG00000091058 25 1.547 - - - - - 0.748 0.799 - - transmembrane protein 173 [Source:ZFIN;Acc:ZDB-GENE-120921-1]
86. ARHGEF40 ENSDARG00000078979 25 1.539 - 0.798 - - - - - 0.741 - Rho guanine nucleotide exchange factor (GEF) 40 [Source:ZFIN;Acc:ZDB-GENE-110623-2]
87. dnah5 ENSDARG00000087373 168 1.525 0.756 - - - - - 0.769 - - dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
88. cpne2 ENSDARG00000007753 206 1.495 0.791 - - - - - 0.704 - - copine II [Source:ZFIN;Acc:ZDB-GENE-030131-7896]
89. si:ch211-137i24.10 ENSDARG00000057706, ENSDARG00000116375 99 1.444 - - 0.720 - - 0.724 - - - si:ch211-137i24.10 [Source:ZFIN;Acc:ZDB-GENE-060526-34]
90. si:ch211-93g21.2 ENSDARG00000092842 56 1.419 - 0.714 0.705 - - - - - - si:ch211-93g21.2 [Source:ZFIN;Acc:ZDB-GENE-060503-799]
91. si:dkey-281a10.1 si:dkey-281a10.1 2 1 - 1.000 - - - - - - -
92. si:dkey-58f10.4 ENSDARG00000094820 3 1 - 1.000 - - - - - - - si:dkey-58f10.4 [Source:ZFIN;Acc:ZDB-GENE-060526-318]
93. ENSDARG00000089102 ENSDARG00000089102 1 1 - 1.000 - - - - - - -
94. si:ch211-221e5.1 si:ch211-221e5.1 2 1 - 1.000 - - - - - - -
95. si:ch211-204a13.1 si:ch211-204a13.1 6 1 - 1.000 - - - - - - -
96. ENSDARG00000077328 ENSDARG00000077328 1 1 - 1.000 - - - - - - -
97. PDE9A_1 PDE9A_1 1 1 - 1.000 - - - - - - -
98. zgc:113397 zgc:113397 60 1 - 1.000 - - - - - - -
99. si:dkey-2j6.4 si:dkey-2j6.4 0 1 - 1.000 - - - - - - -
100. C14H5orf45 C14H5orf45 83 1 - 1.000 - - - - - - -

There are 1353 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA