Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ptx3a

Gene Name Gene ID Reads Annotation
ptx3a ENSDARG00000068275 589 pentraxin 3, long a [Source:ZFIN;Acc:ZDB-GENE-030131-8720]










Genes with expression patterns similar to ptx3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ptx3a ENSDARG00000068275 589 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 pentraxin 3, long a [Source:ZFIN;Acc:ZDB-GENE-030131-8720]
2. si:dkeyp-35e5.1 si:dkeyp-35e5.1 12 2.515 1.000 0.708 - - - - 0.807 - -
3. ksr2 ENSDARG00000094526 134 2.348 0.819 0.808 - - - - 0.721 - - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
4. kcnip1b ENSDARG00000034808, ENSDARG00000111766 136 2.18 - 0.708 - - 0.762 - 0.710 - - Kv channel interacting protein 1 b [Source:ZFIN;Acc:ZDB-GENE-041212-57]
5. BRINP3 BRINP3 11 1.807 1.000 - - - - - 0.807 - -
6. cacng8a ENSDARG00000020450 32 1.805 1.000 - - - - - 0.805 - - calcium channel, voltage-dependent, gamma subunit 8a [Source:ZFIN;Acc:ZDB-GENE-050417-239]
7. SLITRK4 ENSDARG00000079781 54 1.805 1.000 - - - - - 0.805 - - SLIT and NTRK-like family, member 4 [Source:ZFIN;Acc:ZDB-GENE-140303-1]
8. CABZ01087549.1 CABZ01087549.1 108 1.799 1.000 - - - - - 0.799 - -
9. syt8 syt8 82 1.792 1.000 0.792 - - - - - - -
10. cadpsa ENSDARG00000043661 160 1.768 1.000 - - - 0.768 - - - - Ca2+-dependent activator protein for secretion a [Source:ZFIN;Acc:ZDB-GENE-030616-525]
11. pld1b ENSDARG00000057125 325 1.715 - - - - 0.757 - - 0.958 - phospholipase D1b [Source:ZFIN;Acc:ZDB-GENE-070510-3]
12. hspbap1 ENSDARG00000033771 41 1.708 1.000 0.708 - - - - - - - hspb associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040808-38]
13. pdia2 ENSDARG00000018263 74 1.708 1.000 0.708 - - - - - - - protein disulfide isomerase family A, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-705]
14. zgc:110434 21 1.708 1.000 0.708 - - - - - - - zgc:110434
15. ascc2 ENSDARG00000013058 228 1.708 1.000 0.708 - - - - - - - activating signal cointegrator 1 complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1223]
16. tekt1 ENSDARG00000101331 27 1.708 1.000 0.708 - - - - - - - tektin 1 [Source:ZFIN;Acc:ZDB-GENE-041114-99]
17. si:dkeyp-46h3.3 ENSDARG00000092887 11 1.708 1.000 0.708 - - - - - - - si:dkeyp-46h3.3 [Source:ZFIN;Acc:ZDB-GENE-060503-748]
18. kcnk10b ENSDARG00000045956 43 1.708 1.000 0.708 - - - - - - - potassium channel, subfamily K, member 10b [Source:ZFIN;Acc:ZDB-GENE-050420-31]
19. c1qtnf4 ENSDARG00000024299 578 1.706 0.921 - - - - - 0.785 - - C1q and TNF related 4 [Source:ZFIN;Acc:ZDB-GENE-050417-198]
20. TMEM57 TMEM57 260 1.701 1.000 - - - - - 0.701 - -
21. zgc:173709 86 1.7 0.849 0.851 - - - - - - - zgc:173709
22. TEP1 ENSDARG00000038713 289 1.699 - - - - - 0.738 - 0.961 - telomerase-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6153]
23. g6pc3 ENSDARG00000020371 152 1.681 - 0.724 - - - - - 0.957 - glucose 6 phosphatase, catalytic, 3 [Source:ZFIN;Acc:ZDB-GENE-061215-19]
24. hpca ENSDARG00000018397, ENSDARG00000110115 3866 1.667 - 0.941 - - - - 0.726 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
25. cx35b cx35b 63 1.639 0.925 - - - - - 0.714 - -
26. HSPA4L ENSDARG00000053544 363 1.636 - 0.835 - - - - 0.801 - - heat shock protein 4 like [Source:ZFIN;Acc:ZDB-GENE-030131-2412]
27. nptx1l ENSDARG00000074671 569 1.626 - 0.832 - - - - 0.794 - - neuronal pentraxin 1 like [Source:ZFIN;Acc:ZDB-GENE-040426-2418]
28. si:ch211-133l11.10 ENSDARG00000005626 381 1.624 0.849 - - - - - 0.775 - - si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
29. dtymk ENSDARG00000052103 239 1.624 - - - - - 0.726 - 0.898 - deoxythymidylate kinase (thymidylate kinase) [Source:ZFIN;Acc:ZDB-GENE-990603-11]
30. SMAD4_3 SMAD4_3 131 1.62 - 0.789 - - - 0.831 - - -
31. kiaa1549la ENSDARG00000062477 143 1.617 0.823 - - - - - 0.794 - - KIAA1549-like a [Source:ZFIN;Acc:ZDB-GENE-061207-55]
32. si:dkey-32e6.3 ENSDARG00000092934 133 1.605 - - - - 0.816 0.789 - - - si:dkey-32e6.3 [Source:ZFIN;Acc:ZDB-GENE-081104-408]
33. calca ENSDARG00000056590 150 1.596 0.799 - - - - - 0.797 - - calcitonin/calcitonin-related polypeptide, alpha [Source:ZFIN;Acc:ZDB-GENE-040718-173]
34. prrx1b ENSDARG00000042027 1128 1.594 - - - - - - - 0.882 0.712 paired related homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9033]
35. sepn1 801 1.591 - - - - - 0.715 - 0.876 - selenoprotein N, 1
36. spon2b ENSDARG00000002732 115 1.588 - 0.880 - - - - - - 0.708 spondin 2b, extracellular matrix protein [Source:ZFIN;Acc:ZDB-GENE-990415-161]
37. mir219-2 129 1.58 0.805 - - - - - 0.775 - - microRNA 219-2
38. SEMA7A ENSDARG00000078707 465 1.575 - - - - 0.772 - 0.803 - - semaphorin 7A [Source:ZFIN;Acc:ZDB-GENE-030131-3633]
39. syt11a ENSDARG00000057913 1145 1.572 - 0.793 - - - - 0.779 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
40. twist3 ENSDARG00000019646 1221 1.572 - - - - - 0.725 - 0.847 - twist3 [Source:ZFIN;Acc:ZDB-GENE-000210-7]
41. her4.2 ENSDARG00000056729, ENSDARG00000094426 289 1.568 - 0.851 - - - - 0.717 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
42. CR388095.2 ENSDARG00000117604 76 1.567 - 0.708 - - - 0.859 - - -
43. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 1.563 - 0.769 - - - - 0.794 - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
44. kazald2 ENSDARG00000078518 3062 1.556 - - - - - - - 0.770 0.786 Kazal-type serine peptidase inhibitor domain 2 [Source:ZFIN;Acc:ZDB-GENE-070928-14]
45. MPP3_1 MPP3_1 88 1.555 - - - - 0.783 - 0.772 - -
46. sema3e ENSDARG00000036571, ENSDARG00000116446 115 1.553 - - - - 0.829 0.724 - - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:ZFIN;Acc:ZDB-GENE-030131-7864]
47. hmox2a ENSDARG00000055101, ENSDARG00000114695 815 1.553 - - - 0.705 - - - 0.848 - heme oxygenase 2a [Source:ZFIN;Acc:ZDB-GENE-040914-13]
48. Mar-09 Mar-09 126 1.55 - - - - 0.738 - 0.812 - -
49. ppm1nb ENSDARG00000057032 77 1.549 - 0.807 - - 0.742 - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1Nb (putative) [Source:ZFIN;Acc:ZDB-GENE-071004-34]
50. MAP6 MAP6 643 1.548 - 0.743 - - - - 0.805 - -
51. slc1a2b ENSDARG00000102453 3136 1.548 - 0.769 - - - - 0.779 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
52. neurod neurod 1189 1.547 0.789 0.758 - - - - - - -
53. nek2 ENSDARG00000005619 273 1.54 - - - - - 0.812 0.728 - - NIMA-related kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-752]
54. si:ch211-218c6.9 si:ch211-218c6.9 40 1.532 - 0.708 - - 0.824 - - - -
55. FAM196A 82 1.53 - 0.797 - - - - 0.733 - - family with sequence similarity 196 member A
56. arl11l arl11l 31 1.528 - 0.708 - - - 0.820 - - -
57. cdh7 582 1.525 0.731 - - - - - 0.794 - - cadherin 7, type 2, transcript variant X1
58. sv2c ENSDARG00000059997 592 1.524 0.754 - - - - - 0.770 - - synaptic vesicle glycoprotein 2C [Source:ZFIN;Acc:ZDB-GENE-060526-233]
59. cadm3 ENSDARG00000057013 1545 1.522 - 0.772 - - - - 0.750 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
60. si:ch211-138k19.2 si:ch211-138k19.2 398 1.52 - 0.708 - - - - 0.812 - -
61. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 1.518 - - - - 0.768 - 0.750 - - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
62. neflb ENSDARG00000012426 298 1.516 - 0.708 - - - - 0.808 - - neurofilament, light polypeptide b [Source:ZFIN;Acc:ZDB-GENE-060312-44]
63. ZNF337_7 ZNF337_7 198 1.515 - - - - 0.777 - 0.738 - -
64. gng3 ENSDARG00000009553 2530 1.514 - 0.723 - - - - 0.791 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
65. FUT9 FUT9 91 1.513 - 0.708 - - - - 0.805 - -
66. nrn1a ENSDARG00000071860 1311 1.513 - 0.759 - - - - 0.754 - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
67. TUBB2A TUBB2A 142 1.511 - 0.708 - - - - 0.803 - -
68. AL935128.1 AL935128.1 238 1.51 - 0.740 - 0.770 - - - - -
69. BX510922.1 ENSDARG00000101184 147 1.507 - - - - 0.750 0.757 - - -
70. AL935029.1 AL935029.1 514 1.506 - 0.739 - - - - 0.767 - -
71. stx1b ENSDARG00000000503 2724 1.504 - 0.741 - - - - 0.763 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
72. fam46bb 601 1.503 - 0.709 - - - - - 0.794 - family with sequence similarity 46, member Bb
73. jph3 ENSDARG00000102204 175 1.503 - 0.708 - - - - 0.795 - - junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
74. NTRK3 NTRK3 163 1.5 - 0.708 - - - - 0.792 - -
75. shisa7 shisa7 181 1.497 0.783 - - - - - 0.714 - -
76. GLRA3 ENSDARG00000011066 242 1.495 - - - - - 0.705 0.790 - - glycine receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-020402-1]
77. LMAN2L LMAN2L 555 1.49 - - 0.723 - - 0.767 - - -
78. rap2ip rap2ip 681 1.486 - 0.709 - - - - 0.777 - -
79. rbfox3 rbfox3 1443 1.485 - 0.772 - - - - 0.713 - -
80. sez6l2 ENSDARG00000076052 360 1.482 - 0.709 - - - - 0.773 - - seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
81. zic4 ENSDARG00000031307 1228 1.48 - 0.762 - - - - 0.718 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
82. arf4a ENSDARG00000045989, ENSDARG00000103858 2545 1.48 - - - - - - - 0.770 0.710 ADP-ribosylation factor 4a [Source:ZFIN;Acc:ZDB-GENE-040801-109]
83. inaa ENSDARG00000011862 115 1.477 - - - - - 0.709 0.768 - - internexin neuronal intermediate filament protein, alpha a [Source:ZFIN;Acc:ZDB-GENE-060531-65]
84. ccdc104 ccdc104 248 1.476 - - - - 0.715 - - 0.761 -
85. slc12a5b ENSDARG00000078187 329 1.476 - - - - 0.728 - 0.748 - - solute carrier family 12 (potassium/chloride transporter), member 5b [Source:ZFIN;Acc:ZDB-GENE-080707-1]
86. nova1 ENSDARG00000020178 4129 1.474 - 0.757 - - - - 0.717 - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
87. trim46b ENSDARG00000058649 54 1.461 - 0.708 - - - - 0.753 - - tripartite motif containing 46b [Source:ZFIN;Acc:ZDB-GENE-060503-466]
88. FP074874.2 ENSDARG00000105724 107 1.457 0.749 0.708 - - - - - - -
89. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 1.45 - 0.708 - - - - 0.742 - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
90. CCSAP CCSAP 147 1.447 - 0.710 - - - - 0.737 - -
91. cacng3b ENSDARG00000076401 91 1.445 - 0.708 - - - - 0.737 - - calcium channel, voltage-dependent, gamma subunit 3b [Source:ZFIN;Acc:ZDB-GENE-090828-1]
92. mid1 ENSDARG00000060482 154 1.439 - - - - - 0.707 - - 0.732 midline 1 [Source:ZFIN;Acc:ZDB-GENE-110411-205]
93. rab39b rab39b 449 1.438 0.728 - - - - - 0.710 - -
94. lhx1a ENSDARG00000014018 958 1.431 - 0.707 - - - - 0.724 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
95. mllt11 ENSDARG00000071026 2518 1.428 - - - - 0.714 - 0.714 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
96. GIN1 GIN1 317 1.424 - 0.700 - - - 0.724 - - -
97. zgc:113210 ENSDARG00000002872 99 1.415 - 0.708 - - - - 0.707 - - zgc:113210 [Source:ZFIN;Acc:ZDB-GENE-050320-83]
98. tnika ENSDARG00000056218 728 1.411 - 0.707 - - - - 0.704 - - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
99. crb1 ENSDARG00000100506, ENSDARG00000110621 373 1.404 - 0.701 - - - - 0.703 - - crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
100. CABZ01078431.1 CABZ01078431.1 183 1 1.000 - - - - - - - -

There are 1910 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA