Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ptp4a1

Gene Name Gene ID Reads Annotation
ptp4a1 ENSDARG00000006242 10267 protein tyrosine phosphatase type IVA, member 1 [Source:ZFIN;Acc:ZDB-GENE-041121-11]










Genes with expression patterns similar to ptp4a1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ptp4a1 ENSDARG00000006242 10267 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 protein tyrosine phosphatase type IVA, member 1 [Source:ZFIN;Acc:ZDB-GENE-041121-11]
2. atpif1a 6030 2.98 0.740 0.790 0.723 - - - 0.727 - - ATPase inhibitory factor 1a
3. thoc2 ENSDARG00000037503 8711 2.702 - - - 0.954 - 0.976 0.772 - - THO complex 2 [Source:ZFIN;Acc:ZDB-GENE-030616-54]
4. si:dkeyp-44a8.2 ENSDARG00000092493 8308 2.504 - - - - - 0.972 0.826 - 0.706 si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
5. cct3 ENSDARG00000016173 15869 2.484 - - - 0.904 - 0.718 0.862 - - chaperonin containing TCP1, subunit 3 (gamma) [Source:ZFIN;Acc:ZDB-GENE-020419-5]
6. map1lc3b ENSDARG00000101127 3958 2.458 - 0.735 - - - 0.953 0.770 - - microtubule-associated protein 1 light chain 3 beta [Source:ZFIN;Acc:ZDB-GENE-030131-1145]
7. sdhb ENSDARG00000075768 5493 2.435 - 0.724 - - - 0.942 0.769 - - succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Source:ZFIN;Acc:ZDB-GENE-030131-8005]
8. eif3f ENSDARG00000077533 24387 2.433 - - - - - 0.944 0.768 - 0.721 eukaryotic translation initiation factor 3, subunit F [Source:ZFIN;Acc:ZDB-GENE-100215-2]
9. aamp ENSDARG00000045019 2818 2.42 - 0.759 - 0.939 - - 0.722 - - angio-associated, migratory cell protein [Source:ZFIN;Acc:ZDB-GENE-040426-2370]
10. hdac1 ENSDARG00000015427 19804 2.163 0.703 0.709 - - - - - - 0.751 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
11. ndufa12 ENSDARG00000042469, ENSDARG00000116793 3843 1.812 - - - - - 0.962 0.850 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:ZFIN;Acc:ZDB-GENE-050828-1]
12. NDNF ENSDARG00000062936 7287 1.78 - - - - - 0.961 0.819 - - neuron-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-030131-207]
13. rac1 rac1 7341 1.771 - - - 0.946 - - 0.825 - -
14. stip1 ENSDARG00000004906 7742 1.764 - - - 0.956 - - 0.808 - - stress-induced phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-041121-17]
15. meaf6 ENSDARG00000101216 6865 1.764 - - - - - 0.960 0.804 - - MYST/Esa1-associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-040808-12]
16. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.754 - - - - - 0.947 0.807 - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
17. coq9 ENSDARG00000023583, ENSDARG00000110255, ENSDARG00000111424 6051 1.745 - - - - - 0.928 0.817 - - coenzyme Q9 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061207-37]
18. mt-nd5 ENSDARG00000063921 21268 1.742 - - - 0.916 - - 0.826 - - NADH dehydrogenase 5, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-12]
19. PYURF ENSDARG00000045773 4576 1.736 - - - - - 0.947 0.789 - - PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317]
20. lrpprc ENSDARG00000043970 3847 1.728 - - - 0.934 - - 0.794 - - leucine-rich pentatricopeptide repeat containing [Source:ZFIN;Acc:ZDB-GENE-030131-7887]
21. ndufa2 ENSDARG00000021984 4754 1.728 - - - - - 0.959 0.769 - - NADH:ubiquinone oxidoreductase subunit A2 [Source:ZFIN;Acc:ZDB-GENE-050522-377]
22. h3f3b.1_1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 26947 1.723 - - - - - 0.974 0.749 - - H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
23. capza1b ENSDARG00000056090, ENSDARG00000109842, ENSDARG00000110402 12199 1.722 - - - - - 0.903 0.819 - - capping actin protein of muscle Z-line subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-031002-24]
24. hspb8 ENSDARG00000058365, ENSDARG00000109236 8688 1.718 - - - - - 0.918 0.800 - - heat shock protein b8 [Source:ZFIN;Acc:ZDB-GENE-030131-2480]
25. meis1 meis1 6937 1.717 - - - 0.927 - - - - 0.790
26. vapb ENSDARG00000070435, ENSDARG00000112097 6469 1.716 - - - - - 0.940 0.776 - - VAMP (vesicle-associated membrane protein)-associated protein B and C [Source:ZFIN;Acc:ZDB-GENE-030131-2348]
27. HIPK1_1 HIPK1_1 8096 1.709 - 0.936 - - - - - - 0.773
28. srsf11 ENSDARG00000098574 12801 1.707 - - - - - 0.965 - - 0.742 serine/arginine-rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605]
29. kpnb1 ENSDARG00000104889 9282 1.707 - - - - - 0.949 - 0.758 - karyopherin (importin) beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2579]
30. dars ENSDARG00000070043 6854 1.703 - 0.725 - - - 0.978 - - - aspartyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-061110-135]
31. pcca ENSDARG00000028982, ENSDARG00000110281 3212 1.702 - - - 0.934 - - 0.768 - - propionyl-CoA carboxylase subunit alpha [Source:ZFIN;Acc:ZDB-GENE-040718-246]
32. ccdc25 ENSDARG00000021753 3837 1.7 - - - 0.941 - - 0.759 - - coiled-coil domain containing 25 [Source:ZFIN;Acc:ZDB-GENE-040426-1389]
33. ppp1r3cb ENSDARG00000014554 2507 1.699 - - - - - 0.967 0.732 - - protein phosphatase 1, regulatory subunit 3Cb [Source:ZFIN;Acc:ZDB-GENE-040426-1733]
34. sumo1 ENSDARG00000044267 4242 1.691 - - - - - 0.946 0.745 - - small ubiquitin-like modifier 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2186]
35. CABZ01079490.1 CABZ01079490.1 1808 1.684 - - - - - 0.942 0.742 - -
36. tnnt2c ENSDARG00000032242 28801 1.679 - - - - - 0.937 0.742 - - troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
37. HNRNPA2B1 HNRNPA2B1 14997 1.677 - - - - - 0.966 0.711 - -
38. tecrb ENSDARG00000025904 4612 1.67 - 0.720 - 0.950 - - - - - trans-2,3-enoyl-CoA reductase b [Source:ZFIN;Acc:ZDB-GENE-030131-5154]
39. pfn2l ENSDARG00000012682 21690 1.668 0.755 - - - - - 0.913 - - profilin 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-34]
40. baz1b ENSDARG00000102832, ENSDARG00000114866 3543 1.668 - 0.727 - - - 0.941 - - - bromodomain adjacent to zinc finger domain, 1B [Source:ZFIN;Acc:ZDB-GENE-010328-16]
41. arl6ip1 ENSDARG00000054578, ENSDARG00000112340 11714 1.667 0.774 - - - - - 0.893 - - ADP-ribosylation factor-like 6 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1087]
42. si:dkey-9i23.11 si:dkey-9i23.11 3818 1.665 - 0.713 - - - 0.952 - - -
43. si:ch211-114c12.2 ENSDARG00000028542, ENSDARG00000111053 5495 1.664 - - - - - 0.954 - - 0.710 si:ch211-114c12.2 [Source:ZFIN;Acc:ZDB-GENE-030131-8522]
44. WDR61 ENSDARG00000007755 2827 1.662 - - - - - 0.939 0.723 - - WD repeat domain 61 [Source:ZFIN;Acc:ZDB-GENE-040426-1851]
45. ap3d1 ENSDARG00000071424, ENSDARG00000114974 5373 1.661 - 0.726 - - - 0.935 - - - adaptor related protein complex 3 subunit delta 1 [Source:ZFIN;Acc:ZDB-GENE-050208-437]
46. rbm4.2 ENSDARG00000055080 5241 1.66 - - - - - 0.949 - - 0.711 RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3019]
47. TNRC6A ENSDARG00000079688 14433 1.659 - - - 0.905 - - 0.754 - - trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
48. arih2 ENSDARG00000012848 7087 1.659 - - - 0.946 - - - - 0.713 ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
49. rtf1 ENSDARG00000008947 6596 1.658 - 0.726 - 0.932 - - - - - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
50. DUSP28 ENSDARG00000059695 1135 1.657 - 0.717 - 0.940 - - - - - dual specificity phosphatase 28 [Source:ZFIN;Acc:ZDB-GENE-131127-257]
51. minos1 ENSDARG00000101619 5273 1.656 - - - - - 0.936 0.720 - - mitochondrial inner membrane organizing system 1 [Source:ZFIN;Acc:ZDB-GENE-060825-325]
52. ndufab1b ENSDARG00000014915 12796 1.656 - - - - - 0.926 0.730 - - NADH:ubiquinone oxidoreductase subunit AB1b [Source:ZFIN;Acc:ZDB-GENE-030131-4437]
53. aqr ENSDARG00000016775 1581 1.656 - 0.716 - - - 0.940 - - - aquarius intron-binding spliceosomal factor [Source:ZFIN;Acc:ZDB-GENE-040426-1189]
54. arf2 arf2 12369 1.655 - - - - - 0.941 - - 0.714
55. cercam ENSDARG00000079049, ENSDARG00000109573 2228 1.653 - - - - - 0.943 0.710 - - cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
56. slc1a5 ENSDARG00000099186 7580 1.653 - 0.715 - 0.938 - - - - - solute carrier family 1 (neutral amino acid transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-070501-4]
57. prep ENSDARG00000057151 3016 1.652 - - - 0.938 - - 0.714 - - prolyl endopeptidase [Source:ZFIN;Acc:ZDB-GENE-050522-14]
58. glra4a ENSDARG00000006865, ENSDARG00000109562 1117 1.652 - - - - - 0.945 0.707 - - glycine receptor, alpha 4a [Source:ZFIN;Acc:ZDB-GENE-010410-3]
59. psmb7 ENSDARG00000037962 11542 1.651 - - - - - - 0.896 - 0.755 proteasome subunit beta 7 [Source:ZFIN;Acc:ZDB-GENE-001208-4]
60. fkbp3 ENSDARG00000098059 5428 1.649 - - 0.895 - - - 0.754 - - FK506 binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-419]
61. mphosph10 ENSDARG00000012495 1679 1.648 - - 0.707 0.941 - - - - - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-2146]
62. rbfox1l ENSDARG00000021184, ENSDARG00000111700 26249 1.642 - - - - - 0.931 0.711 - - RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
63. aco2 ENSDARG00000007294, ENSDARG00000111879 5162 1.631 - - 0.812 - - - 0.819 - - aconitase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-1390]
64. mccc2 ENSDARG00000017571 5635 1.624 - 0.830 - - - - 0.794 - - methylcrotonoyl-CoA carboxylase 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040426-2493]
65. eif3ea ENSDARG00000090697 14670 1.612 0.721 - - - - - 0.891 - - eukaryotic translation initiation factor 3, subunit E, a [Source:ZFIN;Acc:ZDB-GENE-030131-3827]
66. cdv3 ENSDARG00000023028 12380 1.6 - - - - - - 0.837 - 0.763 carnitine deficiency-associated gene expressed in ventricle 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6034]
67. snx1a ENSDARG00000071031 3975 1.598 - - - - - 0.870 0.728 - - sorting nexin 1a [Source:ZFIN;Acc:ZDB-GENE-060302-3]
68. cfl1 ENSDARG00000021124 78399 1.594 - - - - - 0.822 0.772 - - cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
69. rnf2 ENSDARG00000010381 3427 1.593 - 0.730 - - - - 0.863 - - ring finger protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5243]
70. rps28 ENSDARG00000035860 34765 1.587 - - - - - 0.722 0.865 - - ribosomal protein S28 [Source:ZFIN;Acc:ZDB-GENE-030131-2022]
71. ndufs1 ENSDARG00000028546 5795 1.578 - 0.741 - - - - 0.837 - - NADH:ubiquinone oxidoreductase core subunit S1 [Source:ZFIN;Acc:ZDB-GENE-030131-478]
72. ube2a ENSDARG00000098466 12765 1.573 - - 0.726 - - - 0.847 - - ubiquitin-conjugating enzyme E2A (RAD6 homolog) [Source:ZFIN;Acc:ZDB-GENE-030616-72]
73. spag7 ENSDARG00000011555 3224 1.569 - 0.737 - - - - 0.832 - - sperm associated antigen 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1632]
74. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.564 - - 0.799 - - - 0.765 - - ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
75. rps27a ENSDARG00000032725, ENSDARG00000114059 132883 1.562 - - - - - - 0.785 - 0.777 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
76. hmga2 ENSDARG00000069912 20402 1.559 - 0.840 - - - - - - 0.719 high mobility group AT-hook 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3148]
77. SNRPG ENSDARG00000099667 18697 1.557 - - - - - - 0.821 - 0.736 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
78. ndrg3b ENSDARG00000010052, ENSDARG00000109420 3951 1.555 - - - - - - 0.828 - 0.727 ndrg family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5606]
79. ppp2r1a ppp2r1a 11291 1.546 0.751 - - - - - 0.795 - -
80. pa2g4b ENSDARG00000070657 7999 1.545 - - - - - - 0.840 - 0.705 proliferation-associated 2G4, b [Source:ZFIN;Acc:ZDB-GENE-030131-2182]
81. rap2c ENSDARG00000015649 4709 1.544 - 0.776 - - - - 0.768 - - RAP2C, member of RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041024-1]
82. snrpd3l ENSDARG00000076283 7655 1.541 0.732 - - - - - 0.809 - - small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
83. prdx3 ENSDARG00000032102, ENSDARG00000114240 10034 1.541 - 0.702 - - - - 0.839 - - peroxiredoxin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-18]
84. ddx39ab ENSDARG00000015111 11619 1.532 - - - - - - 0.766 - 0.766 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
85. mrpl36 ENSDARG00000070607 4069 1.527 - 0.747 - - - - 0.780 - - mitochondrial ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-060503-821]
86. tomm22 ENSDARG00000045146, ENSDARG00000109761 3545 1.509 - 0.760 - - - - 0.749 - - translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-9810]
87. pfdn4 ENSDARG00000061228 8266 1.508 - 0.734 - - - - 0.774 - - prefoldin subunit 4 [Source:ZFIN;Acc:ZDB-GENE-100922-122]
88. ehd3 ENSDARG00000007869 3238 1.506 - 0.712 - - - - 0.794 - - EH-domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-041014-352]
89. tnw 16679 1.5 - - - - - 0.788 0.712 - - tenascin W, transcript variant X2
90. ck2a1 ck2a1 3749 1.5 - - - - - - 0.774 - 0.726
91. stmn1a ENSDARG00000004169 21169 1.498 - - - - - - 0.756 - 0.742 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
92. PSIP1 PSIP1 5252 1.497 - 0.728 - - - - 0.769 - -
93. emc2 ENSDARG00000003308, ENSDARG00000114541 7141 1.497 - - - - - - 0.766 - 0.731 ER membrane protein complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040625-82]
94. smc1al ENSDARG00000058203 8838 1.497 - - - - - - 0.735 - 0.762 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
95. eif3g ENSDARG00000016889 10367 1.495 0.729 - - - - - 0.766 - - eukaryotic translation initiation factor 3, subunit G [Source:ZFIN;Acc:ZDB-GENE-040426-1076]
96. fermt2 ENSDARG00000020242 9351 1.495 - 0.729 - - - - 0.766 - - fermitin family member 2 [Source:ZFIN;Acc:ZDB-GENE-050506-132]
97. psmd8 ENSDARG00000020454 6645 1.493 - - - - - - 0.767 - 0.726 proteasome 26S subunit, non-ATPase 8 [Source:ZFIN;Acc:ZDB-GENE-040625-136]
98. eno1a ENSDARG00000022456, ENSDARG00000116458 14401 1.49 - 0.731 - - - - 0.759 - - enolase 1a, (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-6048]
99. adh5 ENSDARG00000080010, ENSDARG00000111574 4980 1.488 - - - - - - 0.759 - 0.729 alcohol dehydrogenase 5 [Source:ZFIN;Acc:ZDB-GENE-011003-1]
100. cct8 ENSDARG00000008243 6843 1.483 0.713 - - - - - 0.770 - - chaperonin containing TCP1, subunit 8 (theta) [Source:ZFIN;Acc:ZDB-GENE-040426-876]

There are 1242 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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