Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ptcd1

Gene Name Gene ID Reads Annotation
ptcd1 ENSDARG00000076176 281 pentatricopeptide repeat domain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6146]










Genes with expression patterns similar to ptcd1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ptcd1 ENSDARG00000076176 281 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 pentatricopeptide repeat domain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6146]
2. si:rp71-1i20.2 ENSDARG00000043198 113 1.647 0.922 - - - - - - - 0.725 si:rp71-1i20.2 [Source:ZFIN;Acc:ZDB-GENE-040724-207]
3. cep85l ENSDARG00000020777 1121 1.587 0.856 0.731 - - - - - - - centrosomal protein 85, like [Source:ZFIN;Acc:ZDB-GENE-041014-309]
4. mak ENSDARG00000059287 144 1.587 0.847 - - - - - - - 0.740 male germ cell-associated kinase [Source:ZFIN;Acc:ZDB-GENE-030131-7279]
5. CPXM1 CPXM1 201 1.542 - - - - - 0.759 - - 0.783
6. BX890577.1 BX890577.1 257 1.509 - - - - - 0.754 - - 0.755
7. C8H22orf39 C8H22orf39 1236 1.506 - - - - - - 0.784 - 0.722
8. ablim3 ENSDARG00000088168, ENSDARG00000112071, ENSDARG00000114074 573 1.506 - - - - - - 0.715 - 0.791 actin binding LIM protein family, member 3 [Source:ZFIN;Acc:ZDB-GENE-070112-1122]
9. adcy6a ENSDARG00000061445, ENSDARG00000114782 500 1.502 - - - - - - 0.728 - 0.774 adenylate cyclase 6a [Source:ZFIN;Acc:ZDB-GENE-060221-1]
10. pecr ENSDARG00000055976 639 1.476 - 0.736 - - - - - - 0.740 peroxisomal trans-2-enoyl-CoA reductase [Source:ZFIN;Acc:ZDB-GENE-050417-232]
11. tti1 ENSDARG00000004114 203 1.475 0.738 - - - 0.737 - - - - TELO2 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-080819-3]
12. pigq ENSDARG00000038097 486 1.458 - 0.707 - - - - - - 0.751 phosphatidylinositol glycan anchor biosynthesis, class Q [Source:ZFIN;Acc:ZDB-GENE-030131-9793]
13. fem1c ENSDARG00000102147 336 1.452 - - - - - - 0.703 - 0.749 fem-1 homolog c (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-031008-3]
14. c1qtnf6a ENSDARG00000055175 335 1.443 - - - - - 0.711 0.732 - - C1q and TNF related 6a [Source:ZFIN;Acc:ZDB-GENE-080108-3]
15. daxx ENSDARG00000000729 734 0.937 0.937 - - - - - - - - death-domain associated protein [Source:ZFIN;Acc:ZDB-GENE-010110-3]
16. gemin5 ENSDARG00000079257 152 0.932 0.932 - - - - - - - - gem (nuclear organelle) associated protein 5 [Source:ZFIN;Acc:ZDB-GENE-031112-9]
17. si:dkey-22i16.9 ENSDARG00000095949 16 0.922 0.922 - - - - - - - - si:dkey-22i16.9 [Source:ZFIN;Acc:ZDB-GENE-090313-261]
18. zgc:113385 zgc:113385 297 0.906 0.906 - - - - - - - -
19. dfna5 dfna5 361 0.903 0.903 - - - - - - - -
20. si:dkey-1d7.3 ENSDARG00000075837 18 0.884 0.884 - - - - - - - - si:dkey-1d7.3 [Source:ZFIN;Acc:ZDB-GENE-091118-46]
21. mapkap1 ENSDARG00000091777 8 0.884 0.884 - - - - - - - - mitogen-activated protein kinase associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-041111-178]
22. mdm1 ENSDARG00000045675 64 0.884 0.884 - - - - - - - - Mdm1 nuclear protein homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-041210-117]
23. il4r il4r 75 0.884 0.884 - - - - - - - -
24. fth1b ENSDARG00000007975 96 0.874 0.874 - - - - - - - - ferritin, heavy polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-040912-30]
25. vps72 1164 0.87 - 0.870 - - - - - - - vacuolar protein sorting 72 homolog (S. cerevisiae)
26. dennd1b ENSDARG00000101868 328 0.868 0.868 - - - - - - - - DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
27. CABZ01085888.1 CABZ01085888.1 868 0.867 0.867 - - - - - - - -
28. erg ENSDARG00000077304 161 0.867 0.867 - - - - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-041212-40]
29. guf1 ENSDARG00000029088 231 0.851 0.851 - - - - - - - - GUF1 homolog, GTPase [Source:ZFIN;Acc:ZDB-GENE-030131-4289]
30. si:ch211-199i15.5 ENSDARG00000103231 316 0.846 - - - - - - 0.846 - - si:ch211-199i15.5 [Source:ZFIN;Acc:ZDB-GENE-130603-58]
31. rfesd ENSDARG00000058725 339 0.844 0.844 - - - - - - - - Rieske (Fe-S) domain containing [Source:ZFIN;Acc:ZDB-GENE-050417-254]
32. cdc34a ENSDARG00000069708 1145 0.843 - - - - - - 0.843 - - cell division cycle 34 homolog (S. cerevisiae) a [Source:ZFIN;Acc:ZDB-GENE-040426-713]
33. camk1gb ENSDARG00000008788 189 0.843 - 0.843 - - - - - - - calcium/calmodulin-dependent protein kinase IGb [Source:ZFIN;Acc:ZDB-GENE-040426-1694]
34. kcnip1a 101 0.842 0.842 - - - - - - - - Kv channel interacting protein 1 a
35. lmbr1 ENSDARG00000024092, ENSDARG00000116241 1418 0.839 - 0.839 - - - - - - - limb development membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-090128-4]
36. CCDC61 ENSDARG00000062307 582 0.835 - 0.835 - - - - - - - coiled-coil domain containing 61 [Source:ZFIN;Acc:ZDB-GENE-060929-348]
37. ercc8 ENSDARG00000069283, ENSDARG00000116263 546 0.835 - 0.835 - - - - - - - excision repair cross-complementation group 8 [Source:ZFIN;Acc:ZDB-GENE-041010-60]
38. arhgap10 ENSDARG00000078326 994 0.835 - 0.835 - - - - - - - Rho GTPase activating protein 10 [Source:ZFIN;Acc:ZDB-GENE-060512-221]
39. si:dkey-66g10.2 ENSDARG00000092845 28 0.834 - - - - - 0.834 - - - si:dkey-66g10.2 [Source:ZFIN;Acc:ZDB-GENE-090313-321]
40. agxt2 ENSDARG00000100709 799 0.832 - - - - - 0.832 - - - alanine--glyoxylate aminotransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050913-100]
41. fam73a 336 0.832 - 0.832 - - - - - - - family with sequence similarity 73, member A, transcript variant X1
42. capn3b ENSDARG00000043035, ENSDARG00000113539 229 0.83 0.830 - - - - - - - - calpain 3b [Source:ZFIN;Acc:ZDB-GENE-041001-149]
43. tmed3 ENSDARG00000028816, ENSDARG00000113132 1686 0.829 - 0.829 - - - - - - - transmembrane p24 trafficking protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8335]
44. APOLD1 APOLD1 56 0.828 0.828 - - - - - - - -
45. fmnl2a ENSDARG00000012586 136 0.827 - - - - - 0.827 - - - formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
46. Mar-08 Mar-08 52 0.824 - - - - 0.824 - - - -
47. si:ch73-27j14.2 si:ch73-27j14.2 32 0.823 0.823 - - - - - - - -
48. spsb3a ENSDARG00000077737 527 0.821 - 0.821 - - - - - - - splA/ryanodine receptor domain and SOCS box containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-4182]
49. slc2a12 ENSDARG00000036865, ENSDARG00000113590 148 0.821 0.821 - - - - - - - - solute carrier family 2 (facilitated glucose transporter), member 12 [Source:ZFIN;Acc:ZDB-GENE-040426-1513]
50. VPRBP VPRBP 727 0.818 0.818 - - - - - - - -
51. KLHL29_1 KLHL29_1 158 0.817 0.817 - - - - - - - -
52. RNF115 ENSDARG00000062450 83 0.816 0.816 - - - - - - - - ring finger protein 115 [Source:ZFIN;Acc:ZDB-GENE-061215-82]
53. med25 ENSDARG00000038005, ENSDARG00000115713 1305 0.814 - 0.814 - - - - - - - mediator complex subunit 25 [Source:ZFIN;Acc:ZDB-GENE-040426-2850]
54. slc40a1 ENSDARG00000000241 4882 0.813 - 0.813 - - - - - - - solute carrier family 40 (iron-regulated transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-000511-8]
55. parp3 ENSDARG00000003961 146 0.813 0.813 - - - - - - - - poly (ADP-ribose) polymerase family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7435]
56. RHOBTB3 RHOBTB3 319 0.812 0.812 - - - - - - - -
57. cox15 ENSDARG00000075933, ENSDARG00000115292 499 0.812 - - - - - - 0.812 - - cytochrome c oxidase assembly homolog 15 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-955]
58. admb ENSDARG00000069027 67 0.811 - - - - - 0.811 - - - adrenomedullin b [Source:ZFIN;Acc:ZDB-GENE-120221-6]
59. si:ch73-108h4.3 si:ch73-108h4.3 193 0.81 - - - - 0.810 - - - -
60. C25H12orf73 C25H12orf73 2031 0.809 - 0.809 - - - - - - -
61. fam212aa 1132 0.808 - - - - - - 0.808 - - family with sequence similarity 212, member Aa, transcript variant X1
62. fam198b ENSDARG00000077054 98 0.808 - 0.808 - - - - - - - family with sequence similarity 198, member B [Source:ZFIN;Acc:ZDB-GENE-100105-1]
63. kcnj11 ENSDARG00000051880, ENSDARG00000114565 211 0.808 - - - - - - 0.808 - - potassium inwardly-rectifying channel, subfamily J, member 11 [Source:ZFIN;Acc:ZDB-GENE-060308-2]
64. si:ch211-255g12.7 si:ch211-255g12.7 44 0.808 0.808 - - - - - - - -
65. trove2 ENSDARG00000089225 430 0.808 0.808 - - - - - - - - TROVE domain family, member 2 [Source:ZFIN;Acc:ZDB-GENE-051113-300]
66. mrpl45 ENSDARG00000044942, ENSDARG00000114416, ENSDARG00000115767 1599 0.807 - 0.807 - - - - - - - mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041]
67. col7a1l ENSDARG00000069692 44 0.805 0.805 - - - - - - - - collagen type VII alpha 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-9861]
68. c1d ENSDARG00000021112 2839 0.805 0.805 - - - - - - - - C1D nuclear receptor corepressor [Source:ZFIN;Acc:ZDB-GENE-041024-8]
69. cpsf3l 870 0.805 - 0.805 - - - - - - - cleavage and polyadenylation specific factor 3-like, transcript variant X1
70. stab1 ENSDARG00000076484 717 0.804 - 0.804 - - - - - - - stabilin 1 [Source:ZFIN;Acc:ZDB-GENE-050208-554]
71. slc16a5 slc16a5 173 0.804 - - - - - - - - 0.804
72. KIF21B ENSDARG00000009733 53 0.803 - - - - - - - - 0.803 kinesin family member 21B [Source:ZFIN;Acc:ZDB-GENE-130530-537]
73. CU929225.1 CU929225.1 104 0.803 - - - - - - - - 0.803
74. ube4a ENSDARG00000040571 172 0.803 0.803 - - - - - - - - ubiquitination factor E4A (UFD2 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-070410-21]
75. pus7 ENSDARG00000031774 195 0.802 0.802 - - - - - - - - pseudouridylate synthase 7 [Source:ZFIN;Acc:ZDB-GENE-060620-1]
76. C10H21orf59 275 0.799 - - - - - - 0.799 - - c10h21orf59 homolog (H. sapiens)
77. ubr3 ENSDARG00000042508 738 0.799 0.799 - - - - - - - - ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]
78. lmo2 ENSDARG00000095019 1098 0.797 0.797 - - - - - - - - LIM domain only 2 (rhombotin-like 1) [Source:ZFIN;Acc:ZDB-GENE-980526-419]
79. npr1b ENSDARG00000018750 174 0.797 - - - - - - - - 0.797 natriuretic peptide receptor 1b [Source:ZFIN;Acc:ZDB-GENE-100805-4]
80. sgcg ENSDARG00000038107 711 0.796 - 0.796 - - - - - - - sarcoglycan, gamma [Source:ZFIN;Acc:ZDB-GENE-030724-2]
81. fbxl5 ENSDARG00000043046 1403 0.796 0.796 - - - - - - - - F-box and leucine-rich repeat protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-900]
82. si:dkey-219c3.2 ENSDARG00000075805 619 0.796 0.796 - - - - - - - - si:dkey-219c3.2 [Source:ZFIN;Acc:ZDB-GENE-090313-238]
83. lss ENSDARG00000061274 68 0.795 - - - - - - - - 0.795 lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) [Source:ZFIN;Acc:ZDB-GENE-050119-7]
84. ldlr ldlr 35 0.793 - - - - - - - - 0.793
85. mgat1b ENSDARG00000036065 996 0.793 - - - - - - - - 0.793 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase b [Source:ZFIN;Acc:ZDB-GENE-061103-589]
86. SCML2 ENSDARG00000012949 1310 0.793 - 0.793 - - - - - - - Scm polycomb group protein like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-546]
87. tamm41 ENSDARG00000100157 1116 0.792 - 0.792 - - - - - - - TAM41 mitochondrial translocator assembly and maintenance homolog [Source:ZFIN;Acc:ZDB-GENE-051030-99]
88. SRR SRR 544 0.791 - - - - - - - - 0.791
89. RAB11FIP5 RAB11FIP5 626 0.791 - - - - - - - - 0.791
90. rbp7b ENSDARG00000070486, ENSDARG00000111858 449 0.791 - - - - - - 0.791 - - retinol binding protein 7b, cellular [Source:ZFIN;Acc:ZDB-GENE-081022-134]
91. TPMT TPMT 138 0.79 - - - - 0.790 - - - -
92. cpb1 ENSDARG00000045442, ENSDARG00000110762 22 0.79 - - - - - - - - 0.790 carboxypeptidase B1 (tissue) [Source:ZFIN;Acc:ZDB-GENE-030131-1132]
93. ppox ENSDARG00000102167 929 0.79 - 0.790 - - - - - - - protoporphyrinogen oxidase [Source:ZFIN;Acc:ZDB-GENE-051120-90]
94. ppp1r14c ENSDARG00000077341 1587 0.79 - - - - - - 0.790 - - protein phosphatase 1, regulatory (inhibitor) subunit 14C [Source:ZFIN;Acc:ZDB-GENE-050706-92]
95. CEP170B ENSDARG00000074636 336 0.789 - - - - - - - - 0.789 centrosomal protein 170B [Source:ZFIN;Acc:ZDB-GENE-131127-515]
96. cacng6b ENSDARG00000046079 258 0.789 - - - - - - 0.789 - - calcium channel, voltage-dependent, gamma subunit 6b [Source:ZFIN;Acc:ZDB-GENE-100922-272]
97. tspan9a ENSDARG00000025299 676 0.789 - 0.789 - - - - - - - tetraspanin 9a [Source:ZFIN;Acc:ZDB-GENE-060503-632]
98. CR759791.3 CR759791.3 134 0.788 - - - - - - - - 0.788
99. coro1a ENSDARG00000054610, ENSDARG00000111327 479 0.787 0.787 - - - - - - - - coronin, actin binding protein, 1A [Source:ZFIN;Acc:ZDB-GENE-030131-9512]
100. cnot6l ENSDARG00000054597, ENSDARG00000112672 1586 0.786 - 0.786 - - - - - - - CCR4-NOT transcription complex, subunit 6-like [Source:ZFIN;Acc:ZDB-GENE-050522-302]

There are 508 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA