Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for prpf4bb

Gene Name Gene ID Reads Annotation
prpf4bb ENSDARG00000040310 2260 pre-mRNA processing factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2799]










Genes with expression patterns similar to prpf4bb

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. prpf4bb ENSDARG00000040310 2260 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 pre-mRNA processing factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2799]
2. uhrf1 ENSDARG00000103409 3282 2.484 - 0.866 - 0.788 - - - - 0.830 ubiquitin-like with PHD and ring finger domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2039]
3. ddx23 ENSDARG00000021945, ENSDARG00000116153 2265 2.459 - 0.721 - - - - - 0.889 0.849 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]
4. IM:7163548 IM:7163548 6540 2.276 - - - - - 0.779 0.787 - 0.710
5. phf10 ENSDARG00000070084 1210 1.836 - - - - - - - 0.972 0.864 PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]
6. irx5a ENSDARG00000034043 1694 1.81 - - - - - - - 0.968 0.842 iroquois homeobox 5a [Source:ZFIN;Acc:ZDB-GENE-010716-2]
7. tmx1 ENSDARG00000019487 1129 1.784 - 0.830 - - - - - 0.954 - thioredoxin-related transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2327]
8. syncripl ENSDARG00000026723 3889 1.768 - 0.868 - - - - - - 0.900 synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
9. ndufs4 ENSDARG00000052840, ENSDARG00000110036 3441 1.76 - 0.853 - - - - - 0.907 - NADH:ubiquinone oxidoreductase subunit S4 [Source:ZFIN;Acc:ZDB-GENE-050522-421]
10. bbip1 ENSDARG00000071046, ENSDARG00000112897, ENSDARG00000116522 1062 1.76 - - - - - - - 0.943 0.817 BBSome interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-050208-445]
11. phc1 ENSDARG00000002971 924 1.755 - - - 0.790 - - - 0.965 - polyhomeotic homolog 1 [Source:ZFIN;Acc:ZDB-GENE-081022-39]
12. ptges3b_1 ENSDARG00000089626 1670 1.748 - 0.925 - - - - - - 0.823 prostaglandin E synthase 3b (cytosolic) [Source:ZFIN;Acc:ZDB-GENE-040625-144]
13. UBL4A UBL4A 1115 1.744 - - - - - - - 0.936 0.808
14. ncalda ENSDARG00000070688 5069 1.737 - - - - - - 0.856 - 0.881 neurocalcin delta a [Source:ZFIN;Acc:ZDB-GENE-080220-28]
15. gnl3l ENSDARG00000020595, ENSDARG00000109309 3582 1.733 - - - - - - 0.764 0.969 - guanine nucleotide binding protein-like 3 (nucleolar)-like [Source:ZFIN;Acc:ZDB-GENE-040723-1]
16. fscn1a ENSDARG00000059680 3999 1.733 - 0.921 - - - - - - 0.812 fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
17. PROSER1 ENSDARG00000086302 1935 1.725 - - - - - - - 0.897 0.828 proline and serine rich 1 [Source:ZFIN;Acc:ZDB-GENE-111003-1]
18. JHDM1D JHDM1D 2277 1.725 - - - - - - - 0.876 0.849
19. ep300b ENSDARG00000061108 5173 1.724 - - - - - 0.750 - 0.974 - E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
20. txnl4a ENSDARG00000036190 2048 1.716 - - - - - - - 0.883 0.833 thioredoxin-like 4A [Source:ZFIN;Acc:ZDB-GENE-041010-25]
21. cks2 ENSDARG00000071410, ENSDARG00000116198 966 1.715 - - - - - - - 0.958 0.757 CDC28 protein kinase regulatory subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050208-508]
22. tbl3 ENSDARG00000052344 1530 1.701 - - - 0.742 - - - 0.959 - transducin (beta)-like 3 [Source:ZFIN;Acc:ZDB-GENE-041114-104]
23. sumo3b ENSDARG00000035993 3414 1.695 - - - - - - - 0.800 0.895 small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
24. CREBZF ENSDARG00000089787 4261 1.693 - - - - - - 0.779 0.914 - CREB/ATF bZIP transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-8015]
25. rbm4.1 ENSDARG00000036386 625 1.691 - - - - - - 0.721 0.970 - RNA binding motif protein 4.1 [Source:ZFIN;Acc:ZDB-GENE-030131-3902]
26. cbx3a ENSDARG00000003860 4922 1.674 - - - - - - - 0.905 0.769 chromobox homolog 3a (HP1 gamma homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-1158]
27. dohh ENSDARG00000003564, ENSDARG00000116423 1117 1.659 - 0.893 - - - - - - 0.766 deoxyhypusine hydroxylase/monooxygenase [Source:ZFIN;Acc:ZDB-GENE-030131-451]
28. SENP7 SENP7 1097 1.657 - - - 0.741 - - - 0.916 -
29. tial1 ENSDARG00000009525 1856 1.655 - 0.724 - - - - - 0.931 - TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1547]
30. oxsr1a ENSDARG00000034189 4314 1.649 - - - - - - - 0.848 0.801 oxidative stress responsive 1a [Source:ZFIN;Acc:ZDB-GENE-070620-25]
31. prp19 prp19 4804 1.648 - - - - 0.728 - - 0.920 -
32. mtss1l mtss1l 2494 1.638 - - - - - - 0.777 0.861 -
33. ythdc1 ENSDARG00000051953, ENSDARG00000114892 4752 1.637 - - - - - - - 0.821 0.816 YTH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-114]
34. si:dkey-19e4.5 ENSDARG00000089886 2562 1.635 - - - - - - 0.804 - 0.831 si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
35. apopt1 ENSDARG00000092473 682 1.634 - - - - - - - 0.889 0.745 apoptogenic 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-090313-66]
36. CABZ01028296.1 CABZ01028296.1 6203 1.634 - - - - - - 0.793 - 0.841
37. ptprsb 1085 1.633 - - - - - - 0.733 - 0.900 protein tyrosine phosphatase, receptor type, s, b
38. rasgef1ba ENSDARG00000033614, ENSDARG00000116057 4860 1.63 - - - 0.729 - - - 0.901 - RasGEF domain family, member 1Ba [Source:ZFIN;Acc:ZDB-GENE-030131-5783]
39. c1d ENSDARG00000021112 2839 1.629 - 0.799 - - - - 0.830 - - C1D nuclear receptor corepressor [Source:ZFIN;Acc:ZDB-GENE-041024-8]
40. pdlim4 ENSDARG00000068973 2567 1.625 - 0.701 - - - - - 0.924 - PDZ and LIM domain 4 [Source:ZFIN;Acc:ZDB-GENE-070308-5]
41. polr2f ENSDARG00000036625, ENSDARG00000110198 1330 1.622 - 0.790 - - - - 0.832 - - polymerase (RNA) II (DNA directed) polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040718-279]
42. seh1l ENSDARG00000004280 2915 1.619 - - - - - 0.737 - 0.882 - SEH1-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-6689]
43. rad51 ENSDARG00000041411, ENSDARG00000111948 1056 1.614 - - - 0.794 - - - - 0.820 RAD51 recombinase [Source:ZFIN;Acc:ZDB-GENE-040426-2286]
44. csnk1da ENSDARG00000008370 3469 1.613 - - - - - 0.796 - 0.817 - casein kinase 1, delta a [Source:ZFIN;Acc:ZDB-GENE-030131-825]
45. fdx1 ENSDARG00000056410, ENSDARG00000115831 3463 1.612 - - - - - 0.704 - 0.908 - ferredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-071015-2]
46. rnf121 ENSDARG00000060282 1809 1.61 - 0.814 - - - - - - 0.796 ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
47. efna5a ENSDARG00000089790 1007 1.602 - 0.796 - - - - - - 0.806 ephrin-A5a [Source:ZFIN;Acc:ZDB-GENE-001128-1]
48. SNORD72 SNORD72 4018 1.602 - 0.738 - - - - - 0.864 -
49. bahcc1 bahcc1 1934 1.602 - - - - - - 0.716 - 0.886
50. shfm1 7620 1.601 - - - - - 0.794 - 0.807 - split hand/foot malformation (ectrodactyly) type 1
51. brd3a ENSDARG00000006527 1636 1.601 - - - - - - 0.789 - 0.812 bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
52. her4.1 ENSDARG00000056732 1264 1.6 - - - 0.751 - - - - 0.849 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
53. vgll4b ENSDARG00000103730 5266 1.592 - - - - - - 0.712 0.880 - vestigial-like family member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-2445]
54. dek ENSDARG00000070108 2262 1.591 - - - 0.827 - - - 0.764 - DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-060512-191]
55. palm1b ENSDARG00000007818 2128 1.587 - - - - - - - 0.774 0.813 paralemmin 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1147]
56. huwe1 ENSDARG00000016782 6493 1.583 - 0.719 - - - - - 0.864 - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
57. dcaf13 ENSDARG00000002267 2435 1.578 - - - - - - - 0.779 0.799 ddb1 and cul4 associated factor 13 [Source:ZFIN;Acc:ZDB-GENE-040426-703]
58. rgl1 ENSDARG00000005989, ENSDARG00000114367 2501 1.578 - - - - - 0.752 - - 0.826 ral guanine nucleotide dissociation stimulator-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1816]
59. otub1b ENSDARG00000011462 4329 1.575 - - - - - - 0.767 - 0.808 OTU deubiquitinase, ubiquitin aldehyde binding 1b [Source:ZFIN;Acc:ZDB-GENE-040718-204]
60. xpo1b ENSDARG00000063229 2529 1.575 - 0.839 - - - - - 0.736 - exportin 1 (CRM1 homolog, yeast) b [Source:ZFIN;Acc:ZDB-GENE-070530-6]
61. smx5 ENSDARG00000070867, ENSDARG00000111500, ENSDARG00000113078, ENSDARG00000113975 3132 1.574 - 0.771 - - - - - 0.803 - smx5 [Source:ZFIN;Acc:ZDB-GENE-000616-10]
62. snrnp70 ENSDARG00000077126 5921 1.573 - - - - - 0.732 - - 0.841 small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
63. si:dkey-42i9.4 ENSDARG00000008049 4752 1.566 - 0.855 - - - - 0.711 - - si:dkey-42i9.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8398]
64. phc2b_1 ENSDARG00000013224 1316 1.564 - - - 0.711 - - - - 0.853 polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
65. xpot ENSDARG00000099652 3026 1.563 - 0.756 - - - - 0.807 - - exportin, tRNA (nuclear export receptor for tRNAs) [Source:ZFIN;Acc:ZDB-GENE-041210-4]
66. abi2b ENSDARG00000014875 2259 1.563 - - - - - - 0.708 - 0.855 abl-interactor 2b [Source:ZFIN;Acc:ZDB-GENE-060519-5]
67. CCDC106 CCDC106 1908 1.561 - - - 0.707 - - - - 0.854
68. nkap ENSDARG00000033450, ENSDARG00000116152 1929 1.559 - 0.762 - - - - 0.797 - - NFKB activating protein [Source:ZFIN;Acc:ZDB-GENE-030131-8064]
69. cpsf3 ENSDARG00000027649 6897 1.558 - - - 0.706 - - 0.852 - - cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
70. supt5h ENSDARG00000042724, ENSDARG00000111598 6419 1.553 - 0.745 - - - - - - 0.808 SPT5 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-001207-1]
71. tmpob ENSDARG00000022978 8121 1.546 - - - - - - 0.739 0.807 - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
72. CABZ01087568.1 CABZ01087568.1 1487 1.546 - - - - - - 0.717 - 0.829
73. zc3h13 ENSDARG00000037177, ENSDARG00000113331 2662 1.545 - - - - - - 0.703 - 0.842 zinc finger CCCH-type containing 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1619]
74. csgalnact2 ENSDARG00000061400 741 1.544 - 0.747 - - - - - - 0.797 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5186]
75. FAM126B 588 1.544 - 0.824 - - - - 0.720 - - family with sequence similarity 126 member B
76. CU571336.1 ENSDARG00000099892 2164 1.542 - 0.720 - - - - - - 0.822
77. tpst1 ENSDARG00000073872 2490 1.541 - - - - - - - 0.819 0.722 tyrosylprotein sulfotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-000210-10]
78. srek1ip1 ENSDARG00000043728 985 1.539 - - - - - - 0.741 - 0.798 SREK1-interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-051030-24]
79. polr2j ENSDARG00000035146 1493 1.536 - - - 0.757 - - 0.779 - - polymerase (RNA) II (DNA directed) polypeptide J [Source:ZFIN;Acc:ZDB-GENE-050522-120]
80. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 1.535 - - - - - - 0.767 0.768 - small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
81. derl1 ENSDARG00000021905 4698 1.535 - - - - - - 0.755 - 0.780 derlin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2793]
82. kif22 ENSDARG00000102624 3694 1.535 - 0.805 - - - - 0.730 - - kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
83. phb2 phb2 3209 1.533 - - - - - - 0.715 - 0.818
84. UTP20 ENSDARG00000099280 1672 1.531 0.776 0.755 - - - - - - - UTP20 small subunit (SSU) processome component [Source:ZFIN;Acc:ZDB-GENE-080225-38]
85. gle1 ENSDARG00000043559 1362 1.531 - - - - - - 0.729 0.802 - GLE1 RNA export mediator homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040831-4]
86. MATR3 MATR3 3962 1.528 - 0.733 - - - - - - 0.795
87. psmc3 ENSDARG00000007141 5592 1.528 - - - - - 0.701 - - 0.827 proteasome 26S subunit, ATPase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-666]
88. NIPBL NIPBL 871 1.528 - 0.719 - - - - 0.809 - -
89. rbbp6 ENSDARG00000037919 4813 1.524 - - 0.724 - - - - - 0.800 retinoblastoma binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-040930-5]
90. ammecr1 ENSDARG00000012892 14475 1.521 - - - - - 0.738 0.783 - - Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) [Source:ZFIN;Acc:ZDB-GENE-040426-1533]
91. rbm15b ENSDARG00000078966, ENSDARG00000112832 1888 1.509 - 0.774 - - - 0.735 - - - RNA binding motif protein 15B [Source:ZFIN;Acc:ZDB-GENE-080204-91]
92. nipblb ENSDARG00000061052 6109 1.507 - - - - - - 0.762 0.745 - nipped-B homolog b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6070]
93. mcm5 ENSDARG00000019507 6407 1.496 - - - 0.753 - - - 0.743 - minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
94. rerea ENSDARG00000077353 4162 1.496 - - - - - - 0.721 - 0.775 arginine-glutamic acid dipeptide (RE) repeats a [Source:ZFIN;Acc:ZDB-GENE-060718-1]
95. pdzrn3b ENSDARG00000073869 1566 1.494 - - - - - - 0.703 - 0.791 PDZ domain containing RING finger 3b [Source:ZFIN;Acc:ZDB-GENE-071022-4]
96. abcf1 ENSDARG00000031795 8635 1.494 - - - - - 0.739 - - 0.755 ATP-binding cassette, sub-family F (GCN20), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-31]
97. adnp2a ENSDARG00000060937 562 1.492 - - - 0.704 - - 0.788 - - ADNP homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040914-55]
98. zgc:77262 ENSDARG00000044545 5563 1.491 0.702 - - - - - - 0.789 - zgc:77262 [Source:ZFIN;Acc:ZDB-GENE-040426-1811]
99. dmbx1b ENSDARG00000002510 351 1.49 - - - - - - 0.726 - 0.764 diencephalon/mesencephalon homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050417-97]
100. acin1b ENSDARG00000026842 3806 1.489 - - - - - 0.752 0.737 - - apoptotic chromatin condensation inducer 1b [Source:ZFIN;Acc:ZDB-GENE-030826-12]

There are 1301 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA