Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for prpf38b

Gene Name Gene ID Reads Annotation
prpf38b ENSDARG00000053101 1785 pre-mRNA processing factor 38B [Source:ZFIN;Acc:ZDB-GENE-040426-2878]










Genes with expression patterns similar to prpf38b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. prpf38b ENSDARG00000053101 1785 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 pre-mRNA processing factor 38B [Source:ZFIN;Acc:ZDB-GENE-040426-2878]
2. GATAD2B ENSDARG00000005834 3855 2.303 - - 0.842 - - - 0.714 - 0.747 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
3. ipo9 ENSDARG00000016753, ENSDARG00000113327 936 2.198 - 0.741 - - - - 0.739 0.718 - importin 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2953]
4. tfdp1a ENSDARG00000019293, ENSDARG00000111589 1118 1.735 - - 0.905 - - 0.830 - - - transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
5. prep ENSDARG00000057151 3016 1.735 - - 0.905 - - - 0.830 - - prolyl endopeptidase [Source:ZFIN;Acc:ZDB-GENE-050522-14]
6. mybbp1a ENSDARG00000078214 2458 1.714 - 0.779 0.935 - - - - - - MYB binding protein (P160) 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9864]
7. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.704 - - 0.964 - - - - - 0.740 ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
8. zc3h13 ENSDARG00000037177, ENSDARG00000113331 2662 1.703 - - 0.884 - - - 0.819 - - zinc finger CCCH-type containing 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1619]
9. vangl2 ENSDARG00000027397 2418 1.701 - - 0.907 - - - - - 0.794 VANGL planar cell polarity protein 2 [Source:ZFIN;Acc:ZDB-GENE-020507-3]
10. dennd5a ENSDARG00000017006 3426 1.696 - 0.782 0.914 - - - - - - DENN/MADD domain containing 5A [Source:ZFIN;Acc:ZDB-GENE-071211-1]
11. si:dkey-19e4.5 ENSDARG00000089886 2562 1.688 - - 0.897 - - - 0.791 - - si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
12. thrap3b ENSDARG00000098228 4396 1.683 - - 0.949 - - - - - 0.734 thyroid hormone receptor associated protein 3b [Source:ZFIN;Acc:ZDB-GENE-040516-9]
13. ddx49 ENSDARG00000012899 1604 1.668 - 0.774 0.894 - - - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]
14. bxdc2 ENSDARG00000098935 1348 1.668 - 0.767 0.901 - - - - - - brix domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060518-1]
15. nin ENSDARG00000060298 1558 1.661 - - 0.921 - - - - - 0.740 ninein (GSK3B interacting protein) [Source:ZFIN;Acc:ZDB-GENE-070725-1]
16. lphn3.1 lphn3.1 756 1.661 - 0.911 - - - - - - 0.750
17. cpsf6 ENSDARG00000018618 3923 1.661 - - 0.852 - - - - - 0.809 cleavage and polyadenylation specific factor 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5277]
18. fkbp3 ENSDARG00000098059 5428 1.657 - - 0.917 - - - 0.740 - - FK506 binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-419]
19. sec22a ENSDARG00000078328 1207 1.655 - - 0.914 - - - 0.741 - - SEC22 homolog A, vesicle trafficking protein [Source:ZFIN;Acc:ZDB-GENE-030131-3553]
20. tubgcp2 ENSDARG00000013079 1520 1.654 - 0.740 0.914 - - - - - - tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
21. zmiz1a ENSDARG00000074502 3920 1.65 - - 0.879 - - 0.771 - - - zinc finger, MIZ-type containing 1a [Source:ZFIN;Acc:ZDB-GENE-080220-27]
22. top1l ENSDARG00000070545 40529 1.646 - - 0.824 - - - 0.822 - - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
23. RSF1 RSF1 1242 1.645 - - 0.902 - - - - - 0.743
24. tnw 16679 1.644 - 0.765 0.879 - - - - - - tenascin W, transcript variant X2
25. AL844567.1 AL844567.1 1605 1.643 - - 0.916 - - - - - 0.727
26. rqcd1 2301 1.638 - - 0.909 - - - 0.729 - - RCD1 required for cell differentiation1 homolog (S. pombe)
27. sae1 ENSDARG00000010487 2028 1.635 - - - 0.711 - - 0.924 - - SUMO1 activating enzyme subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040625-21]
28. aqr ENSDARG00000016775 1581 1.632 - - 0.910 - - - 0.722 - - aquarius intron-binding spliceosomal factor [Source:ZFIN;Acc:ZDB-GENE-040426-1189]
29. coe2 coe2 1633 1.632 - - 0.905 - - - - - 0.727
30. kirrela 1170 1.625 - - - - - - 0.852 - 0.773 kin of IRRE like a, transcript variant X2
31. dlb ENSDARG00000004232 5120 1.623 - - 0.865 - - - - - 0.758 deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
32. ELOVL4 ELOVL4 3026 1.623 - - 0.923 - - - - - 0.700
33. hmgb2b ENSDARG00000053990 11519 1.622 - - - - - - 0.801 - 0.821 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
34. nsun2 ENSDARG00000056665 740 1.622 - 0.704 0.918 - - - - - - NOP2/Sun RNA methyltransferase family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4017]
35. npr3 ENSDARG00000035253, ENSDARG00000109797, ENSDARG00000110534 857 1.619 - 0.716 0.903 - - - - - - natriuretic peptide receptor 3 [Source:ZFIN;Acc:ZDB-GENE-060531-91]
36. fam8a1 fam8a1 561 1.618 - 0.706 0.912 - - - - - -
37. dlgap4a ENSDARG00000060849 1813 1.618 - - 0.903 - - - 0.715 - - discs, large (Drosophila) homolog-associated protein 4a [Source:ZFIN;Acc:ZDB-GENE-080219-51]
38. nxf1 ENSDARG00000055076 3251 1.609 - - 0.888 - - - - - 0.721 nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
39. cdc6 ENSDARG00000009942, ENSDARG00000109602 2540 1.598 - - 0.878 - - - - - 0.720 cell division cycle 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-131]
40. tmem134 ENSDARG00000024828 3241 1.595 - - - - - - 0.816 - 0.779 transmembrane protein 134 [Source:ZFIN;Acc:ZDB-GENE-040426-1345]
41. WDR77 2463 1.592 0.743 - - - - - 0.849 - - WD repeat domain 77
42. CCDC106 CCDC106 1908 1.583 - 0.791 - - - - 0.792 - -
43. arpp19b ENSDARG00000039880 4823 1.582 - - 0.868 - - 0.714 - - - cAMP-regulated phosphoprotein 19b [Source:ZFIN;Acc:ZDB-GENE-040426-930]
44. smarca5 ENSDARG00000052348 15433 1.574 - - - - - - 0.834 - 0.740 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
45. SNRPG ENSDARG00000099667 18697 1.569 - - - - - - 0.852 - 0.717 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
46. mxd3 ENSDARG00000098350 3040 1.565 - - - - - - 0.800 - 0.765 MAX dimerization protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1588]
47. atp2a2a ENSDARG00000029439 940 1.564 - 0.715 - - - - 0.849 - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a [Source:ZFIN;Acc:ZDB-GENE-040426-702]
48. cdc14b ENSDARG00000021483 4958 1.564 - - 0.809 - - - - - 0.755 cell division cycle 14B [Source:ZFIN;Acc:ZDB-GENE-040426-820]
49. si:dkey-42i9.4 ENSDARG00000008049 4752 1.557 - - - 0.720 - - 0.837 - - si:dkey-42i9.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8398]
50. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.549 - - - - - - 0.753 - 0.796 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
51. mcm5 ENSDARG00000019507 6407 1.547 - - 0.748 - - - - - 0.799 minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
52. tgif1 ENSDARG00000059337 4020 1.547 - - - - - - 0.774 - 0.773 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
53. tmem35 ENSDARG00000052567 5685 1.543 - 0.759 - - - - - - 0.784 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
54. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 1.536 - - 0.779 - - - - 0.757 - chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
55. fundc1 ENSDARG00000040822 2460 1.526 - - - - - - 0.772 - 0.754 FUN14 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-466]
56. sdc3 3788 1.523 - 0.809 - - - - 0.714 - - syndecan 3
57. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.494 - - - - - - 0.786 - 0.708 pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
58. pmpca ENSDARG00000102607 1024 1.493 - 0.773 - - - 0.720 - - - peptidase (mitochondrial processing) alpha [Source:ZFIN;Acc:ZDB-GENE-030131-5809]
59. meis2b ENSDARG00000077840 5166 1.489 - 0.711 0.778 - - - - - - Meis homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-000210-23]
60. smc2 ENSDARG00000017744, ENSDARG00000114076 2271 1.489 - - - - - 0.749 - - 0.740 structural maintenance of chromosomes 2 [Source:ZFIN;Acc:ZDB-GENE-030131-105]
61. sf1 ENSDARG00000008188 5142 1.488 - - - - - - 0.733 - 0.755 splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]
62. acvr1b acvr1b 2963 1.486 0.754 - - - - - - - 0.732
63. trrap ENSDARG00000100623 3429 1.479 - - - - - 0.727 0.752 - - transformation/transcription domain-associated protein [Source:ZFIN;Acc:ZDB-GENE-050809-47]
64. nup153 ENSDARG00000099972 1462 1.476 - - - 0.740 - - - - 0.736 nucleoporin 153 [Source:ZFIN;Acc:ZDB-GENE-030131-4581]
65. trmt112 ENSDARG00000071878, ENSDARG00000109878 930 1.473 - 0.769 - - - - - 0.704 - tRNA methyltransferase 11-2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-30]
66. luc7l3 ENSDARG00000014366 4416 1.471 - - - - - - 0.755 - 0.716 LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
67. pias4a ENSDARG00000007081 4264 1.47 - - - 0.717 - - 0.753 - - protein inhibitor of activated STAT, 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2734]
68. elf2b ENSDARG00000079626, ENSDARG00000117064 3057 1.463 - 0.708 - - - - 0.755 - - E74-like factor 2b (ets domain transcription factor) [Source:ZFIN;Acc:ZDB-GENE-031215-1]
69. RNF38 ENSDARG00000062055 3901 1.462 - - - - - - 0.740 0.722 - ring finger protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-8693]
70. smek1 ENSDARG00000042187 3509 1.454 - - - - - - 0.729 - 0.725 SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:ZFIN;Acc:ZDB-GENE-030131-3958]
71. espl1 ENSDARG00000075354 818 1.452 - 0.743 - - - - 0.709 - - extra spindle pole bodies like 1, separase [Source:ZFIN;Acc:ZDB-GENE-030131-5188]
72. cdk2 ENSDARG00000026577 2835 1.45 - - - - - - 0.740 - 0.710 cyclin-dependent kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2741]
73. u2af1 ENSDARG00000015325 3217 1.449 - - - - - - - 0.748 0.701 U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
74. metap2a ENSDARG00000069261 762 1.446 - 0.738 - - - - 0.708 - - methionyl aminopeptidase 2a [Source:ZFIN;Acc:ZDB-GENE-061013-5]
75. zfr ENSDARG00000027109, ENSDARG00000116459 4171 1.446 - 0.702 - - - - 0.744 - - zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
76. pebp1 ENSDARG00000042069 6651 1.445 - 0.709 - - - - 0.736 - - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
77. fam195b 1159 1.443 - - - - - - 0.717 - 0.726 family with sequence similarity 195, member B
78. zgc:91910 ENSDARG00000035678 6172 1.443 - - - - - - 0.740 0.703 - zgc:91910 [Source:ZFIN;Acc:ZDB-GENE-040808-48]
79. srpk1b ENSDARG00000031560 2079 1.441 - 0.704 - - - - - - 0.737 SRSF protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2292]
80. eif3ea ENSDARG00000090697 14670 1.438 - - 0.735 - - - 0.703 - - eukaryotic translation initiation factor 3, subunit E, a [Source:ZFIN;Acc:ZDB-GENE-030131-3827]
81. ezh2 ENSDARG00000010571 3273 1.428 - - - - - 0.702 - - 0.726 enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
82. dcaf12 ENSDARG00000063155 697 1.425 - 0.723 - - - - 0.702 - - DDB1 and CUL4 associated factor 12 [Source:ZFIN;Acc:ZDB-GENE-061013-363]
83. otub1b ENSDARG00000011462 4329 1.424 - - - - - - 0.724 0.700 - OTU deubiquitinase, ubiquitin aldehyde binding 1b [Source:ZFIN;Acc:ZDB-GENE-040718-204]
84. rtca ENSDARG00000002215 3558 1.414 - - - - - - 0.713 - 0.701 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
85. usp7 ENSDARG00000073710 7017 1.401 - - - - - - 0.701 - 0.700 ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
86. gtf2a1 ENSDARG00000011000 2026 0.982 - - 0.982 - - - - - - general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
87. pak4 ENSDARG00000018110 1962 0.98 - - 0.980 - - - - - - p21 protein (Cdc42/Rac)-activated kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040704-69]
88. enc1 ENSDARG00000035398 1657 0.979 - - 0.979 - - - - - - ectodermal-neural cortex 1 [Source:ZFIN;Acc:ZDB-GENE-060531-140]
89. wdr11 ENSDARG00000075245 743 0.978 - - 0.978 - - - - - - WD repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-081107-28]
90. rfc1 ENSDARG00000054799 1416 0.974 - - 0.974 - - - - - - replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]
91. COLGALT1 ENSDARG00000073974 5069 0.973 - - 0.973 - - - - - - collagen beta(1-O)galactosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-070720-6]
92. gusb ENSDARG00000063126 867 0.969 - - 0.969 - - - - - - glucuronidase, beta [Source:ZFIN;Acc:ZDB-GENE-070705-256]
93. chd1l ENSDARG00000015471 1142 0.967 - - 0.967 - - - - - - chromodomain helicase DNA binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040426-892]
94. brd4 ENSDARG00000078904 5367 0.964 - - 0.964 - - - - - - bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
95. dsc2l ENSDARG00000039677 2747 0.961 - - 0.961 - - - - - - desmocollin 2 like [Source:ZFIN;Acc:ZDB-GENE-031116-55]
96. pes ENSDARG00000018902 3286 0.953 - - 0.953 - - - - - - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
97. SEC24A ENSDARG00000104375 2614 0.951 - - 0.951 - - - - - - SEC24 homolog A, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-120926-1]
98. aco2 ENSDARG00000007294, ENSDARG00000111879 5162 0.95 - - 0.950 - - - - - - aconitase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-1390]
99. fam49ba ENSDARG00000020929 1980 0.947 - - 0.947 - - - - - - family with sequence similarity 49, member Ba [Source:ZFIN;Acc:ZDB-GENE-030131-9537]
100. atpif1a 6030 0.935 - - 0.935 - - - - - - ATPase inhibitory factor 1a

There are 1014 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA