Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for prpf38a

Gene Name Gene ID Reads Annotation
prpf38a ENSDARG00000039213, ENSDARG00000116046 1537 pre-mRNA processing factor 38A [Source:ZFIN;Acc:ZDB-GENE-040801-225]










Genes with expression patterns similar to prpf38a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. prpf38a ENSDARG00000039213, ENSDARG00000116046 1537 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 pre-mRNA processing factor 38A [Source:ZFIN;Acc:ZDB-GENE-040801-225]
2. hnrpl 6412 2.232 - 0.788 - - - - 0.735 - 0.709 heterogeneous nuclear ribonucleoprotein L, transcript variant X1
3. ncl ENSDARG00000002710 16951 2.198 - 0.732 - - - 0.713 - - 0.753 nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
4. tgif1 ENSDARG00000059337 4020 2.149 - 0.729 - - - - 0.711 - 0.709 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
5. rbmx ENSDARG00000014244 3445 1.678 - - - - - - 0.825 - 0.853 RNA binding motif protein X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
6. eif2s1a ENSDARG00000005827 5992 1.579 - 0.827 - - - - - - 0.752 eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
7. nsd1a ENSDARG00000060016 2974 1.571 - 0.825 - - - 0.746 - - - nuclear receptor binding SET domain protein 1a [Source:ZFIN;Acc:ZDB-GENE-080519-3]
8. brms1 ENSDARG00000051955 900 1.568 - - - - - 0.817 0.751 - - BRMS1, transcriptional repressor and anoikis regulator [Source:ZFIN;Acc:ZDB-GENE-030616-596]
9. uggt1 ENSDARG00000054746 2060 1.566 - 0.787 - - - - 0.779 - - UDP-glucose glycoprotein glucosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-061103-619]
10. htatsf1 ENSDARG00000056649 2018 1.565 - 0.786 - - - - 0.779 - - HIV-1 Tat specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1578]
11. SCML2 ENSDARG00000012949 1310 1.557 - - - - - - 0.820 - 0.737 Scm polycomb group protein like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-546]
12. SNRPG ENSDARG00000099667 18697 1.551 - 0.787 - - - - - - 0.764 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
13. ctnnbip1 ENSDARG00000038954 2519 1.542 - 0.741 - 0.801 - - - - - catenin, beta interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-3]
14. whsc1l1 8544 1.536 - - - - - 0.783 - - 0.753 Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
15. sumo3a ENSDARG00000028119 13447 1.533 - - - - - - 0.773 - 0.760 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
16. CDCA2 CDCA2 930 1.533 - - - - - 0.789 0.744 - -
17. TRAK2 ENSDARG00000102471 2258 1.532 - - - - - - 0.828 - 0.704 trafficking protein, kinesin binding 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7496]
18. eif4h ENSDARG00000042252 6742 1.528 - - - - - - 0.739 - 0.789 eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
19. u2af2b ENSDARG00000011740 6946 1.527 - - - - - 0.748 0.779 - - U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
20. mapk6 ENSDARG00000032103 6422 1.526 - 0.803 - - - 0.723 - - - mitogen-activated protein kinase 6 [Source:ZFIN;Acc:ZDB-GENE-050420-7]
21. stmn1a ENSDARG00000004169 21169 1.526 - - - - - - 0.794 - 0.732 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
22. kansl2 ENSDARG00000056318, ENSDARG00000113311 4702 1.522 - - - - - - 0.791 - 0.731 KAT8 regulatory NSL complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-041010-67]
23. ankrd46a ENSDARG00000044328 482 1.522 - - - - - 0.732 0.790 - - ankyrin repeat domain 46a [Source:ZFIN;Acc:ZDB-GENE-030131-2643]
24. stau2 ENSDARG00000026801, ENSDARG00000112268 5161 1.52 - 0.737 - - - - 0.783 - - staufen double-stranded RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-687]
25. hnrnpl2 ENSDARG00000059303, ENSDARG00000114431 6633 1.518 - - - - - 0.769 0.749 - - heterogeneous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]
26. eif4bb ENSDARG00000010194, ENSDARG00000112432 12555 1.517 - 0.711 - - - - 0.806 - - eukaryotic translation initiation factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-030131-8563]
27. nucks1a ENSDARG00000078473 28285 1.514 - 0.811 - - - 0.703 - - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
28. myef2 ENSDARG00000059398 6050 1.505 - - - - - - 0.781 - 0.724 myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
29. zgc:114119 ENSDARG00000098992 1090 1.503 - - - - - 0.727 0.776 - - zgc:114119 [Source:ZFIN;Acc:ZDB-GENE-050913-56]
30. sin3b ENSDARG00000062472 2025 1.501 - - - - - 0.727 - - 0.774 SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
31. si:dkeyp-44a8.2 ENSDARG00000092493 8308 1.5 - - - - - - 0.773 - 0.727 si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
32. luc7l ENSDARG00000055903 3357 1.496 - 0.787 - - - 0.709 - - - LUC7-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-111]
33. ube2g1b ENSDARG00000069527 5376 1.492 - 0.746 - - - 0.746 - - - ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2939]
34. ipo7 ENSDARG00000035751 7095 1.485 - 0.784 - - - - 0.701 - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
35. fam76b ENSDARG00000012432 2722 1.485 - - - - - - 0.755 - 0.730 family with sequence similarity 76, member B [Source:ZFIN;Acc:ZDB-GENE-030131-6955]
36. ezh2 ENSDARG00000010571 3273 1.484 - 0.773 - - - - - - 0.711 enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
37. mapre1b ENSDARG00000002659 9119 1.48 - - - - - 0.754 - - 0.726 microtubule-associated protein, RP/EB family, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2256]
38. h2afx ENSDARG00000029406 2116 1.476 - - - - - 0.764 0.712 - - H2A histone family, member X [Source:ZFIN;Acc:ZDB-GENE-040426-987]
39. ddx39ab ENSDARG00000015111 11619 1.476 - - - - - - 0.736 - 0.740 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
40. znf827 ENSDARG00000076171 6304 1.474 - 0.756 - - - 0.718 - - - zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
41. nono ENSDARG00000020482, ENSDARG00000115783 12482 1.472 - 0.752 - - - - - - 0.720 non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
42. stk24b ENSDARG00000023878 1054 1.472 - - - - - 0.769 0.703 - - serine/threonine kinase 24b (STE20 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2841]
43. hoxb1b ENSDARG00000054033, ENSDARG00000112663 1967 1.464 - 0.744 - - - - 0.720 - - homeobox B1b [Source:ZFIN;Acc:ZDB-GENE-980526-290]
44. BX539313.1 ENSDARG00000097396 1277 1.463 - - - - - 0.714 - - 0.749
45. zgc:65772 zgc:65772 2092 1.461 - - - - - 0.738 0.723 - -
46. dlgap5 ENSDARG00000045167, ENSDARG00000109645 1466 1.457 - - - - - - 0.734 - 0.723 discs, large (Drosophila) homolog-associated protein 5 [Source:ZFIN;Acc:ZDB-GENE-040912-160]
47. rbms3 ENSDARG00000044574 2514 1.455 - 0.743 - - - - 0.712 - - RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
48. abcf2a ENSDARG00000038785 2065 1.45 - 0.746 - - - - 0.704 - - ATP-binding cassette, sub-family F (GCN20), member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8714]
49. CEP250 CEP250 1175 1.449 - 0.708 - - - - - - 0.741
50. ccnb3 ENSDARG00000034855, ENSDARG00000110875 2123 1.448 - - - - - - 0.710 - 0.738 cyclin B3 [Source:ZFIN;Acc:ZDB-GENE-060929-684]
51. rbm39a ENSDARG00000011613 4520 1.446 - 0.717 - - - - - 0.729 - RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB-GENE-040426-2852]
52. srrt ENSDARG00000017762, ENSDARG00000114824 2158 1.446 - - - - - - - 0.703 0.743 serrate RNA effector molecule homolog (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-020419-13]
53. taf3 ENSDARG00000045513 1819 1.442 0.707 - - - - - 0.735 - - TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto [Source:ZFIN;Acc:ZDB-GENE-030131-6406]
54. snrpd3l ENSDARG00000076283 7655 1.434 - - - - - - 0.708 - 0.726 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
55. wu:fc51f04 wu:fc51f04 7074 1.431 - 0.722 - - - - - - 0.709
56. u2af1 ENSDARG00000015325 3217 1.426 - - 0.711 - - - - - 0.715 U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
57. anapc7 ENSDARG00000063005 1139 1.423 - - - - - 0.715 0.708 - - anaphase promoting complex subunit 7 [Source:ZFIN;Acc:ZDB-GENE-081104-113]
58. gtf2e2 ENSDARG00000012672, ENSDARG00000109689, ENSDARG00000115211 1677 1.422 - 0.706 - - - - 0.716 - - general transcription factor IIE, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-030131-6794]
59. msl2a ENSDARG00000038909 1357 1.419 - - - - - - 0.711 - 0.708 male-specific lethal 2 homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-449]
60. nrarpb ENSDARG00000018958 6225 1.407 - 0.703 - - - - - - 0.704 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
61. hoxb10a ENSDARG00000011579 2135 0.906 - - - - - - 0.906 - - homeobox B10a [Source:ZFIN;Acc:ZDB-GENE-000328-2]
62. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 0.901 - - - - - 0.901 - - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
63. sulf1 ENSDARG00000038428 2748 0.883 - 0.883 - - - - - - - sulfatase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9242]
64. chaf1b ENSDARG00000056473 880 0.875 - - - - - - 0.875 - - chromatin assembly factor 1, subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1947]
65. hnrnpr ENSDARG00000014569 3423 0.865 - 0.865 - - - - - - - heterogeneous nuclear ribonucleoprotein R [Source:ZFIN;Acc:ZDB-GENE-040426-2766]
66. IWS1 2428 0.862 - - - - - 0.862 - - - IWS1, SUPT6H interacting protein, transcript variant X2
67. pou6f1 ENSDARG00000011570 1501 0.861 - - - - - - 0.861 - - POU class 6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-530]
68. kif14 ENSDARG00000062187, ENSDARG00000112389 653 0.86 - - - - - - 0.860 - - kinesin family member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-5759]
69. npm1b ENSDARG00000037675 5448 0.86 - - - - - - 0.860 - - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
70. eif3ja ENSDARG00000012603 6324 0.857 - 0.857 - - - - - - - eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
71. rnf7 ENSDARG00000055524 3390 0.846 - - - - - - 0.846 - - ring finger protein 7 [Source:ZFIN;Acc:ZDB-GENE-050220-12]
72. pwp2h ENSDARG00000037109 1395 0.846 - 0.846 - - - - - - - PWP2 periodic tryptophan protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-021031-3]
73. sox5 ENSDARG00000011582 3632 0.845 - 0.845 - - - - - - - SRY (sex determining region Y)-box 5 [Source:ZFIN;Acc:ZDB-GENE-000607-13]
74. gabpb2a ENSDARG00000007943 1570 0.844 - - - - - - 0.844 - - GA binding protein transcription factor subunit beta 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5733]
75. ENDOD1_5 ENDOD1_5 8723 0.844 - 0.844 - - - - - - -
76. HECW2 HECW2 691 0.844 - - - - - 0.844 - - -
77. nkrf ENSDARG00000100536 1873 0.844 - - - - - 0.844 - - - NFKB repressing factor [Source:ZFIN;Acc:ZDB-GENE-030616-73]
78. C18H11orf58 C18H11orf58 1293 0.84 - - - - - - 0.840 - -
79. srrm1 ENSDARG00000001244 4972 0.84 - - - - - 0.840 - - - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
80. slc1a3a ENSDARG00000104431 9888 0.84 - 0.840 - - - - - - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
81. rbl2 ENSDARG00000045636 658 0.839 - - - - - - 0.839 - - retinoblastoma-like 2 (p130) [Source:ZFIN;Acc:ZDB-GENE-061109-2]
82. narfl ENSDARG00000062216 768 0.838 - - - - - - 0.838 - - nuclear prelamin A recognition factor-like [Source:ZFIN;Acc:ZDB-GENE-070209-119]
83. phex ENSDARG00000062363 1413 0.835 - 0.835 - - - - - - - phosphate regulating endopeptidase homolog, X-linked [Source:ZFIN;Acc:ZDB-GENE-030103-2]
84. strap ENSDARG00000007405 6426 0.834 - - - - - 0.834 - - - serine/threonine kinase receptor associated protein [Source:ZFIN;Acc:ZDB-GENE-040426-1110]
85. kalrnb ENSDARG00000063538, ENSDARG00000111077, ENSDARG00000111084 880 0.832 - - - - - 0.832 - - - kalirin RhoGEF kinase b [Source:ZFIN;Acc:ZDB-GENE-060421-7244]
86. si:ch211-51c14.1 ENSDARG00000054645, ENSDARG00000110953 2434 0.832 - 0.832 - - - - - - - si:ch211-51c14.1 [Source:ZFIN;Acc:ZDB-GENE-120215-48]
87. eif3d ENSDARG00000021257 1524 0.83 - 0.830 - - - - - - - eukaryotic translation initiation factor 3, subunit D [Source:ZFIN;Acc:ZDB-GENE-030131-8442]
88. sephs1 ENSDARG00000058292 3347 0.828 - - - - - - 0.828 - - selenophosphate synthetase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3670]
89. ciapin1 ENSDARG00000045733, ENSDARG00000110622, ENSDARG00000112743 1270 0.825 - 0.825 - - - - - - - cytokine induced apoptosis inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-040808-57]
90. ILKAP ENSDARG00000040615 817 0.824 - - - - - - 0.824 - - integrin-linked kinase-associated serine/threonine phosphatase [Source:ZFIN;Acc:ZDB-GENE-070410-122]
91. eya3 ENSDARG00000036100 1965 0.824 - - - - - - 0.824 - - EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
92. PLEKHG4 ENSDARG00000075964 2860 0.822 - - - - - - 0.822 - - pleckstrin homology domain containing, family G (with RhoGef domain) member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-4824]
93. CACFD1 ENSDARG00000090818 1298 0.82 - 0.820 - - - - - - - calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1365]
94. COQ7 ENSDARG00000062594 989 0.82 - - - - - 0.820 - - - coenzyme Q7 homolog, ubiquinone (yeast) [Source:ZFIN;Acc:ZDB-GENE-070209-262]
95. snrpe ENSDARG00000033175 7462 0.819 - 0.819 - - - - - - - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
96. dctn2 ENSDARG00000031388 3825 0.817 - - - - - - 0.817 - - dynactin 2 (p50) [Source:ZFIN;Acc:ZDB-GENE-040426-1279]
97. gtf2a1 ENSDARG00000011000 2026 0.816 - 0.816 - - - - - - - general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
98. hmgb2b ENSDARG00000053990 11519 0.816 - - - - - - - - 0.816 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
99. nans nans 1365 0.814 - - - - - 0.814 - - -
100. cnn3b ENSDARG00000029856 4807 0.813 - - - - - - 0.813 - - calponin 3, acidic b [Source:ZFIN;Acc:ZDB-GENE-050522-263]

There are 668 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA