Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for prpf3

Gene Name Gene ID Reads Annotation
prpf3 ENSDARG00000086425, ENSDARG00000116776 513 PRP3 pre-mRNA processing factor 3 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040823-3]










Genes with expression patterns similar to prpf3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. prpf3 ENSDARG00000086425, ENSDARG00000116776 513 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PRP3 pre-mRNA processing factor 3 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040823-3]
2. fignl1 ENSDARG00000016427 636 1.575 - 0.823 - - - - 0.752 - - fidgetin-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1862]
3. hoxd12a ENSDARG00000059263 795 1.557 - 0.801 - - - - 0.756 - - homeobox D12a [Source:ZFIN;Acc:ZDB-GENE-990415-118]
4. gapvd1 ENSDARG00000090183, ENSDARG00000113177 611 1.487 - 0.745 - - - - 0.742 - - GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
5. rbm39b ENSDARG00000041853 1421 1.465 - 0.701 - - - - 0.764 - - RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB-GENE-050327-97]
6. gpsm1b ENSDARG00000054874 1308 1.444 - 0.712 - - - - 0.732 - - G protein signaling modulator 1b [Source:ZFIN;Acc:ZDB-GENE-110203-5]
7. galnt1 ENSDARG00000061335 1648 1.402 - 0.700 - - - - 0.702 - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2360]
8. rbfa ENSDARG00000073705 601 0.907 - - - - - - 0.907 - - ribosome binding factor A [Source:ZFIN;Acc:ZDB-GENE-070410-83]
9. rbl2 ENSDARG00000045636 658 0.88 - 0.880 - - - - - - - retinoblastoma-like 2 (p130) [Source:ZFIN;Acc:ZDB-GENE-061109-2]
10. ercc5 ENSDARG00000023678 468 0.879 - 0.879 - - - - - - - excision repair cross-complementation group 5 [Source:ZFIN;Acc:ZDB-GENE-050327-28]
11. TNS3 TNS3 1286 0.875 0.875 - - - - - - - -
12. TERF2IP ENSDARG00000103977 216 0.872 - 0.872 - - - - - - - telomeric repeat binding factor 2, interacting protein [Source:ZFIN;Acc:ZDB-GENE-131121-641]
13. PEG3_3 PEG3_3 165 0.871 - 0.871 - - - - - - -
14. tfip11 ENSDARG00000056932 479 0.87 - 0.870 - - - - - - - tuftelin interacting protein 11 [Source:ZFIN;Acc:ZDB-GENE-040718-479]
15. MED9 ENSDARG00000096631 755 0.859 - - - - - - 0.859 - - mediator complex subunit 9 [Source:HGNC Symbol;Acc:HGNC:25487]
16. GPR161 ENSDARG00000055659 1067 0.855 0.855 - - - - - - - - G protein-coupled receptor 161 [Source:ZFIN;Acc:ZDB-GENE-030616-58]
17. cx40.8 ENSDARG00000071192 105 0.834 - - - - - 0.834 - - - connexin 40.8 [Source:ZFIN;Acc:ZDB-GENE-050616-10]
18. si:ch211-32p8.2 si:ch211-32p8.2 25 0.833 - 0.833 - - - - - - -
19. dpf2 ENSDARG00000012219 666 0.832 - - - - - 0.832 - - - D4, zinc and double PHD fingers family 2 [Source:ZFIN;Acc:ZDB-GENE-041024-2]
20. tpte ENSDARG00000056985 724 0.823 - 0.823 - - - - - - - transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
21. pdzrn3b ENSDARG00000073869 1566 0.823 - 0.823 - - - - - - - PDZ domain containing RING finger 3b [Source:ZFIN;Acc:ZDB-GENE-071022-4]
22. srek1 ENSDARG00000009764, ENSDARG00000114600 319 0.821 - 0.821 - - - - - - - splicing regulatory glutamine/lysine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-132]
23. tmem63bb ENSDARG00000106631 503 0.82 - 0.820 - - - - - - - transmembrane protein 63Bb [Source:NCBI gene;Acc:569678]
24. slc25a38b ENSDARG00000074533 354 0.82 - 0.820 - - - - - - - solute carrier family 25, member 38b [Source:ZFIN;Acc:ZDB-GENE-110214-1]
25. xirp1 ENSDARG00000030722 1486 0.819 - 0.819 - - - - - - - xin actin binding repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-050221-2]
26. si:dkeyp-89h8.1 si:dkeyp-89h8.1 429 0.819 - - - - - - 0.819 - -
27. si:ch211-214p16.2 ENSDARG00000094975 59 0.818 - 0.818 - - - - - - - si:ch211-214p16.2 [Source:NCBI gene;Acc:368902]
28. MIS18BP1 ENSDARG00000042563 229 0.817 - - - - - 0.817 - - - MIS18 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030616-151]
29. RFFL ENSDARG00000042833 73 0.817 - 0.817 - - - - - - - ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-2274]
30. rab34a ENSDARG00000045628, ENSDARG00000113347 358 0.809 - - - - - 0.809 - - - RAB34, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-041010-197]
31. GEMIN6 ENSDARG00000105394 130 0.808 - 0.808 - - - - - - - gem (nuclear organelle) associated protein 6 [Source:ZFIN;Acc:ZDB-GENE-090218-1]
32. si:ch211-22k7.1 si:ch211-22k7.1 30 0.808 - 0.808 - - - - - - -
33. wu:fu71h07 ENSDARG00000103860 558 0.803 - - - - - - 0.803 - - wu:fu71h07 [Source:ZFIN;Acc:ZDB-GENE-050302-121]
34. ranbp3 ranbp3 1009 0.803 - 0.803 - - - - - - -
35. bub1bb ENSDARG00000074927 1667 0.803 - - - - - - 0.803 - - BUB1 mitotic checkpoint serine/threonine kinase Bb [Source:ZFIN;Acc:ZDB-GENE-030829-51]
36. slc1a6 ENSDARG00000010096 764 0.8 - 0.800 - - - - - - - solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 [Source:ZFIN;Acc:ZDB-GENE-071004-45]
37. rabl2 ENSDARG00000063321, ENSDARG00000109811, ENSDARG00000112447 301 0.8 - 0.800 - - - - - - - RAB, member of RAS oncogene family-like 2 [Source:ZFIN;Acc:ZDB-GENE-060503-464]
38. rhd ENSDARG00000002194 269 0.8 - 0.800 - - - - - - - Rh blood group, D antigen [Source:ZFIN;Acc:ZDB-GENE-051213-1]
39. mier1b ENSDARG00000001447 1680 0.798 - 0.798 - - - - - - - mesoderm induction early response 1b, transcriptional regulator [Source:ZFIN;Acc:ZDB-GENE-070705-170]
40. slc6a14 ENSDARG00000029866 61 0.798 - 0.798 - - - - - - - solute carrier family 6 (amino acid transporter), member 14 [Source:ZFIN;Acc:ZDB-GENE-130411-2]
41. haus3 ENSDARG00000061385, ENSDARG00000110959 343 0.797 - 0.797 - - - - - - - HAUS augmin-like complex, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-060929-592]
42. mllt10 ENSDARG00000045401 7557 0.796 - - - - - - 0.796 - - MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:ZFIN;Acc:ZDB-GENE-041114-176]
43. AL954696.1 ENSDARG00000078442 768 0.795 - 0.795 - - - - - - - NOP9 nucleolar protein [Source:NCBI gene;Acc:100332577]
44. six2b ENSDARG00000054878 567 0.795 - 0.795 - - - - - - - SIX homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080723-23]
45. pop4 ENSDARG00000101472, ENSDARG00000112497 749 0.795 - 0.795 - - - - - - - POP4 homolog, ribonuclease P/MRP subunit [Source:ZFIN;Acc:ZDB-GENE-050522-505]
46. rab18a ENSDARG00000055291, ENSDARG00000111917 2088 0.794 - - - - - - 0.794 - - RAB18A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030131-3980]
47. MAGI3 MAGI3 114 0.791 - - - - - 0.791 - - -
48. alpk2 ENSDARG00000079637 1483 0.791 - 0.791 - - - - - - - alpha-kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1868]
49. mrps18b ENSDARG00000007065 2121 0.79 - 0.790 - - - - - - - mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278]
50. soul5 ENSDARG00000075015 118 0.79 - 0.790 - - - - - - - heme-binding protein soul5 [Source:ZFIN;Acc:ZDB-GENE-110718-2]
51. CU929175.1 CU929175.1 200 0.789 - - - - - 0.789 - - -
52. lrp12 ENSDARG00000098845 999 0.788 0.788 - - - - - - - - low density lipoprotein receptor-related protein 12 [Source:ZFIN;Acc:ZDB-GENE-060503-399]
53. med28 ENSDARG00000037410, ENSDARG00000112591, ENSDARG00000113633, ENSDARG00000117136 629 0.786 - - - - - - 0.786 - - mediator complex subunit 28 [Source:ZFIN;Acc:ZDB-GENE-041121-4]
54. lin7a ENSDARG00000013414 1589 0.786 - 0.786 - - - - - - - lin-7 homolog A (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-1665]
55. angptl4 ENSDARG00000035859 2701 0.785 0.785 - - - - - - - - angiopoietin-like 4 [Source:ZFIN;Acc:ZDB-GENE-041111-222]
56. herc2 ENSDARG00000073841 486 0.784 - - - - - 0.784 - - - HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-070718-6]
57. wu:fc17b08 ENSDARG00000094249 427 0.784 - 0.784 - - - - - - - wu:fc17b08 [Source:ZFIN;Acc:ZDB-GENE-030131-2746]
58. naa35 ENSDARG00000012378 3442 0.783 - - - - - 0.783 - - - N(alpha)-acetyltransferase 35, NatC auxiliary subunit [Source:ZFIN;Acc:ZDB-GENE-030131-306]
59. si:ch211-191d2.2 ENSDARG00000090836 316 0.782 - - - - - 0.782 - - - si:ch211-191d2.2 [Source:ZFIN;Acc:ZDB-GENE-110407-3]
60. RSF1 RSF1 1242 0.781 - - - - - - 0.781 - -
61. papss1 ENSDARG00000057099 809 0.781 - - - - - 0.781 - - - 3'-phosphoadenosine 5'-phosphosulfate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-080721-5]
62. sema6dl ENSDARG00000011533 319 0.781 - 0.781 - - - - - - - sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like [Source:ZFIN;Acc:ZDB-GENE-050417-171]
63. si:ch211-136m16.8 ENSDARG00000090767 91 0.78 - - - - - 0.780 - - - si:ch211-136m16.8 [Source:ZFIN;Acc:ZDB-GENE-121214-301]
64. tsc1b ENSDARG00000057918 738 0.78 - - - - - 0.780 - - - TSC complex subunit 1b [Source:ZFIN;Acc:ZDB-GENE-030131-3404]
65. alad ENSDARG00000100372 1711 0.778 - 0.778 - - - - - - - aminolevulinate dehydratase [Source:ZFIN;Acc:ZDB-GENE-050417-123]
66. lbx2 ENSDARG00000025131 1388 0.778 - 0.778 - - - - - - - ladybird homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-001206-2]
67. sp3a ENSDARG00000001549 1994 0.776 - 0.776 - - - - - - - sp3a transcription factor [Source:ZFIN;Acc:ZDB-GENE-070410-111]
68. ankrd49 ENSDARG00000023508 631 0.776 - - - - - - 0.776 - - ankyrin repeat domain 49 [Source:ZFIN;Acc:ZDB-GENE-050417-46]
69. ldlrad3 ENSDARG00000078600 926 0.774 - 0.774 - - - - - - - low density lipoprotein receptor class A domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1533]
70. pptc7b ENSDARG00000052658 1756 0.774 0.774 - - - - - - - - PTC7 protein phosphatase homolog b [Source:ZFIN;Acc:ZDB-GENE-081105-111]
71. zgc:173617 zgc:173617 114 0.77 - 0.770 - - - - - - -
72. si:ch211-155o21.3 ENSDARG00000086518 301 0.769 - 0.769 - - - - - - - si:ch211-155o21.3 [Source:ZFIN;Acc:ZDB-GENE-121214-24]
73. uba3 ENSDARG00000057987, ENSDARG00000116639 1181 0.768 - - - - - - 0.768 - - ubiquitin-like modifier activating enzyme 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2825]
74. tut1 ENSDARG00000057321 301 0.768 - - - - - - 0.768 - - terminal uridylyl transferase 1, U6 snRNA-specific [Source:ZFIN;Acc:ZDB-GENE-050706-68]
75. pitpnb ENSDARG00000036005 513 0.768 - 0.768 - - - - - - - phosphatidylinositol transfer protein, beta [Source:ZFIN;Acc:ZDB-GENE-040426-895]
76. npm1b ENSDARG00000037675 5448 0.767 - - - - - - 0.767 - - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
77. CR847543.1 ENSDARG00000086708 155 0.767 - 0.767 - - - - - - -
78. tmem108 ENSDARG00000090230 1924 0.767 - - - - - - 0.767 - - transmembrane protein 108 [Source:ZFIN;Acc:ZDB-GENE-091204-397]
79. si:ch211-69l10.2 169 0.767 - 0.767 - - - - - - - si:ch211-69l10.2
80. lnpep ENSDARG00000100394 1436 0.767 - 0.767 - - - - - - - leucyl/cystinyl aminopeptidase [Source:ZFIN;Acc:ZDB-GENE-030131-1534]
81. rin2 ENSDARG00000074589 445 0.766 - - - - - - 0.766 - - Ras and Rab interactor 2 [Source:ZFIN;Acc:ZDB-GENE-090312-194]
82. PTDSS1 PTDSS1 186 0.765 - - - - - 0.765 - - -
83. cplx4c ENSDARG00000094889 253 0.765 - 0.765 - - - - - - - complexin 4c [Source:ZFIN;Acc:ZDB-GENE-101018-1]
84. SNORD36 SNORD36 71 0.765 - 0.765 - - - - - - -
85. CHD1 ENSDARG00000103787 1645 0.764 - - - - - - 0.764 - - chromodomain helicase DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7120]
86. supt16h ENSDARG00000079949 4755 0.764 - - - - - - 0.764 - - SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
87. wdr3 ENSDARG00000011079 1403 0.763 - - - - - - 0.763 - - WD repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9830]
88. znf646p znf646p 719 0.763 - 0.763 - - - - - - -
89. tmem39b ENSDARG00000018956 590 0.763 0.763 - - - - - - - - transmembrane protein 39B [Source:ZFIN;Acc:ZDB-GENE-030131-6042]
90. zgc:113278 ENSDARG00000037813 525 0.762 - 0.762 - - - - - - - zgc:113278 [Source:ZFIN;Acc:ZDB-GENE-050327-66]
91. C16H1orf43 C16H1orf43 380 0.761 - - - - - 0.761 - - -
92. slc25a44b ENSDARG00000035905 968 0.76 - - - - - - 0.760 - - solute carrier family 25, member 44 b [Source:ZFIN;Acc:ZDB-GENE-050320-89]
93. lcp1 ENSDARG00000023188 298 0.76 - - - - - - 0.760 - - lymphocyte cytosolic protein 1 (L-plastin) [Source:ZFIN;Acc:ZDB-GENE-991213-5]
94. esrrgb ENSDARG00000011696 108 0.759 - - - - - - 0.759 - - estrogen-related receptor gamma b [Source:ZFIN;Acc:ZDB-GENE-040616-4]
95. srd5a1 ENSDARG00000020509 242 0.759 - - - - - - 0.759 - - steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) [Source:ZFIN;Acc:ZDB-GENE-060929-938]
96. dynlt3 ENSDARG00000046132 1054 0.759 - - - - - - 0.759 - - dynein, light chain, Tctex-type 3 [Source:ZFIN;Acc:ZDB-GENE-040927-24]
97. zgc:193790 ENSDARG00000102033 167 0.759 - - - - - 0.759 - - - zgc:193790 [Source:ZFIN;Acc:ZDB-GENE-080723-55]
98. si:rp71-36a1.5_1 ENSDARG00000077252, ENSDARG00000090882 93 0.758 - 0.758 - - - - - - - si:rp71-36a1.5 [Source:ZFIN;Acc:ZDB-GENE-091204-428]
99. si:ch73-299h12.1 ENSDARG00000102321 233 0.758 - 0.758 - - - - - - - si:ch73-299h12.1 [Source:ZFIN;Acc:ZDB-GENE-081031-84]
100. pecr ENSDARG00000055976 639 0.758 - 0.758 - - - - - - - peroxisomal trans-2-enoyl-CoA reductase [Source:ZFIN;Acc:ZDB-GENE-050417-232]

There are 205 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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