Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for pms1

Gene Name Gene ID Reads Annotation
pms1 ENSDARG00000000476 105 PMS1 homolog 1, mismatch repair system component [Source:ZFIN;Acc:ZDB-GENE-030616-528]










Genes with expression patterns similar to pms1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. pms1 ENSDARG00000000476 105 8 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PMS1 homolog 1, mismatch repair system component [Source:ZFIN;Acc:ZDB-GENE-030616-528]
2. si:dkey-32e23.4 ENSDARG00000063159 28 1.711 - 0.844 - - - - - - 0.867 si:dkey-32e23.4 [Source:ZFIN;Acc:ZDB-GENE-081105-41]
3. ak7a ENSDARG00000019001 71 1.7 - - 0.843 - - - 0.857 - - adenylate kinase 7a [Source:ZFIN;Acc:ZDB-GENE-040724-122]
4. CU183952.1 CU183952.1 32 1.655 - - - - - - - 0.884 0.771
5. lrrc9 ENSDARG00000054352 25 1.648 - - 0.789 - - - - - 0.859 leucine rich repeat containing 9 [Source:ZFIN;Acc:ZDB-GENE-080917-56]
6. pou5f3 ENSDARG00000044774 212 1.641 - - - - - - - 0.835 0.806 POU domain, class 5, transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-980526-485]
7. lrrc48 lrrc48 50 1.639 - - - - - - - 0.799 0.840
8. efcab2 ENSDARG00000074323 88 1.602 - - - - - - 0.708 0.894 - EF-hand calcium binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-070521-5]
9. AL929220.1 ENSDARG00000103323 14 1.589 - - - - - - 0.721 - 0.868
10. pald1b ENSDARG00000039352 66 1.577 - - 0.721 - - - - 0.856 - phosphatase domain containing, paladin 1b [Source:ZFIN;Acc:ZDB-GENE-070424-88]
11. zgc:174698 ENSDARG00000075731, ENSDARG00000077266, ENSDARG00000098236 24 1.572 - - - - - - 0.721 0.851 - zgc:174698 [Source:ZFIN;Acc:ZDB-GENE-080204-74]
12. bmb ENSDARG00000096603 120 1.571 - 0.791 - - - - - 0.780 - brambleberry [Source:ZFIN;Acc:ZDB-GENE-030131-5577]
13. pus1 ENSDARG00000045562 114 1.566 - 0.774 - - - - 0.792 - - pseudouridylate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-041212-26]
14. si:ch73-346m18.6 si:ch73-346m18.6 40 1.558 - 0.742 - - - - - - 0.816
15. ACKR3 ACKR3 235 1.544 - - - - - - 0.829 0.715 -
16. HEATR2_1 HEATR2_1 166 1.539 - 0.716 - - - - 0.823 - -
17. morn3 ENSDARG00000021697, ENSDARG00000110843 93 1.533 - 0.741 - - - - - - 0.792 MORN repeat containing 3 [Source:ZFIN;Acc:ZDB-GENE-050417-152]
18. slc9a3.1 ENSDARG00000058498 46 1.526 - - - - - - 0.726 - 0.800 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-060503-545]
19. vrk2 ENSDARG00000021547 45 1.518 - - - - - - 0.738 - 0.780 vaccinia related kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1046]
20. si:dkey-147f3.8 ENSDARG00000092166 28 1.509 - 0.719 - - - - - - 0.790 si:dkey-147f3.8 [Source:ZFIN;Acc:ZDB-GENE-061009-32]
21. DIDO1 ENSDARG00000057940 312 1.501 - 0.795 - - - - - 0.706 - death inducer-obliterator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6117]
22. CU694319.1 CU694319.1 72 1.498 - - - - 0.754 - 0.744 - -
23. tmeff1a ENSDARG00000008191 74 1.492 - 0.791 - - - - - - 0.701 transmembrane protein with EGF-like and two follistatin-like domains 1a [Source:ZFIN;Acc:ZDB-GENE-070912-294]
24. si:dkey-176f19.7 ENSDARG00000103348 10 1.479 - - 0.758 - - - 0.721 - - si:dkey-176f19.7 [Source:ZFIN;Acc:ZDB-GENE-110913-130]
25. slc34a1a ENSDARG00000028824 35 1.469 - - - - - - 0.721 - 0.748 solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
26. rwdd3 ENSDARG00000057315 289 1.468 - 0.713 - - - - - 0.755 - RWD domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1723]
27. DYRK3 ENSDARG00000070600, ENSDARG00000115625 127 1.465 - 0.720 - - - - - 0.745 - dual specificity tyrosine phosphorylation regulated kinase 3 [Source:ZFIN;Acc:ZDB-GENE-080219-31]
28. si:ch73-367f21.5 ENSDARG00000089503 55 1.463 - - - - - - 0.718 - 0.745 si:ch73-367f21.5 [Source:ZFIN;Acc:ZDB-GENE-120214-29]
29. CR812472.2 ENSDARG00000097380 62 1.422 - - - - - - 0.718 - 0.704
30. anapc5 ENSDARG00000008461 434 0.927 - - - - - - 0.927 - - anaphase promoting complex subunit 5 [Source:ZFIN;Acc:ZDB-GENE-030131-1574]
31. OTOF OTOF 195 0.925 - 0.925 - - - - - - -
32. SCARNA13 SCARNA13 122 0.922 - - - - - - 0.922 - -
33. lepa ENSDARG00000091085 11 0.922 - - - - - - 0.922 - - leptin a [Source:ZFIN;Acc:ZDB-GENE-081001-1]
34. PDXP ENSDARG00000109823 195 0.918 - - - - - - 0.918 - - pyridoxal (pyridoxine, vitamin B6) phosphatase [Source:ZFIN;Acc:ZDB-GENE-080723-69]
35. SNORA38 SNORA38 574 0.912 - - - - - - 0.912 - -
36. TMEM260 ENSDARG00000076362 63 0.909 - 0.909 - - - - - - - transmembrane protein 260 [Source:ZFIN;Acc:ZDB-GENE-030131-4198]
37. cacnb2a ENSDARG00000099045 374 0.908 - - - - - - 0.908 - - calcium channel, voltage-dependent, beta 2a [Source:ZFIN;Acc:ZDB-GENE-080808-7]
38. rnaset2l ENSDARG00000058413 17 0.908 - - - - - - 0.908 - - ribonuclease T2, like [Source:ZFIN;Acc:ZDB-GENE-090819-2]
39. si:dkey-287i17.5 si:dkey-287i17.5 5 0.908 - - - - - - 0.908 - -
40. si:dkey-106m10.5 si:dkey-106m10.5 10 0.908 - - - - - - 0.908 - -
41. si:ch1073-185p12.2 ENSDARG00000100199 7 0.908 - - - - - - 0.908 - - si:ch1073-185p12.2 [Source:ZFIN;Acc:ZDB-GENE-110411-196]
42. irgf3 ENSDARG00000062820 20 0.908 - - - - - - 0.908 - - immunity-related GTPase family, f3 [Source:ZFIN;Acc:ZDB-GENE-051212-6]
43. APOL4 APOL4 27 0.908 - - - - - - 0.908 - -
44. zgc:172120 ENSDARG00000069199 278 0.908 - - - - - - 0.908 - - zgc:172120 [Source:ZFIN;Acc:ZDB-GENE-080204-46]
45. ubn1 ENSDARG00000063169, ENSDARG00000115275 32 0.908 - - - - - - 0.908 - - ubinuclein 1 [Source:ZFIN;Acc:ZDB-GENE-070928-28]
46. mb21d2b mb21d2b 84 0.908 - - - - - - 0.908 - -
47. tbx16 ENSDARG00000007329 255 0.908 - - - - - - 0.908 - - T-box 16 [Source:ZFIN;Acc:ZDB-GENE-990615-5]
48. CABZ01088933.1 CABZ01088933.1 40 0.908 - - - - - - 0.908 - -
49. EMB ENSDARG00000059485 35 0.908 - - - - - - 0.908 - - embigin [Source:ZFIN;Acc:ZDB-GENE-070705-158]
50. adat1 ENSDARG00000061348 62 0.908 - - - - - - 0.908 - - adenosine deaminase, tRNA-specific 1 [Source:ZFIN;Acc:ZDB-GENE-070410-64]
51. TTC18 TTC18 58 0.908 - - - - - - 0.908 - -
52. NAT14 ENSDARG00000115349 21 0.908 - - - - - - 0.908 - - N-acetyltransferase 14 (GCN5-related, putative) [Source:ZFIN;Acc:ZDB-GENE-060825-15]
53. PKP3 PKP3 391 0.907 - - - - - - 0.907 - -
54. stat3 ENSDARG00000022712 346 0.907 - - - - - - 0.907 - - signal transducer and activator of transcription 3 (acute-phase response factor) [Source:ZFIN;Acc:ZDB-GENE-980526-68]
55. fam184a ENSDARG00000014081 93 0.907 - - - - - - 0.907 - - family with sequence similarity 184, member A [Source:ZFIN;Acc:ZDB-GENE-041014-214]
56. C25HXorf38_1 C25HXorf38_1 35 0.907 - - - - - - 0.907 - -
57. LRRC61 ENSDARG00000077357 55 0.899 - - - - - - 0.899 - - leucine rich repeat containing 61 [Source:ZFIN;Acc:ZDB-GENE-060616-245]
58. id2b ENSDARG00000029544 380 0.889 - - - - - - - - 0.889 inhibitor of DNA binding 2b [Source:ZFIN;Acc:ZDB-GENE-030131-15]
59. fgfbp1 fgfbp1 445 0.889 - 0.889 - - - - - - -
60. setd4 ENSDARG00000036592 237 0.888 - - - - - - 0.888 - - SET domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-050808-2]
61. slc4a11 ENSDARG00000075532, ENSDARG00000115789 20 0.886 - 0.886 - - - - - - - solute carrier family 4, sodium borate transporter, member 11 [Source:ZFIN;Acc:ZDB-GENE-090313-183]
62. ccdc130 ENSDARG00000041533, ENSDARG00000113467 281 0.886 - - - - - - 0.886 - - coiled-coil domain containing 130 [Source:ZFIN;Acc:ZDB-GENE-040912-36]
63. si:dkey-256i11.2 ENSDARG00000093713 102 0.885 - - - - - - - 0.885 - si:dkey-256i11.2 [Source:ZFIN;Acc:ZDB-GENE-110913-47]
64. bbs2 ENSDARG00000041621, ENSDARG00000110124 321 0.884 - - - - - - - 0.884 - Bardet-Biedl syndrome 2 [Source:ZFIN;Acc:ZDB-GENE-020801-1]
65. EOGT ENSDARG00000022853 366 0.883 - - - - - - 0.883 - - EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase [Source:ZFIN;Acc:ZDB-GENE-120813-8]
66. LSM5 ENSDARG00000071573 371 0.883 - 0.883 - - - - - - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-070822-23]
67. slc10a4 ENSDARG00000009131 51 0.88 - 0.880 - - - - - - - solute carrier family 10, member 4 [Source:ZFIN;Acc:ZDB-GENE-041014-249]
68. nr0b1 ENSDARG00000056541 35 0.879 - - - - - - - 0.879 - nuclear receptor subfamily 0, group B, member 1 [Source:ZFIN;Acc:ZDB-GENE-070130-1]
69. e2f5 ENSDARG00000038812 388 0.875 - - - - - - - 0.875 - E2F transcription factor 5 [Source:ZFIN;Acc:ZDB-GENE-030828-3]
70. rbm4.1 ENSDARG00000036386 625 0.874 - 0.874 - - - - - - - RNA binding motif protein 4.1 [Source:ZFIN;Acc:ZDB-GENE-030131-3902]
71. CU683898.1 CU683898.1 203 0.873 - - - - - - - 0.873 -
72. DCHS1 DCHS1 209 0.873 - - - - - - - 0.873 -
73. CABZ01010103.1 CABZ01010103.1 24 0.872 - - - - - - - - 0.872
74. prr16 ENSDARG00000101530 5 0.87 - - - - - - - - 0.870 proline rich 16 [Source:ZFIN;Acc:ZDB-GENE-070724-2]
75. zgc:173443 ENSDARG00000034403 26 0.87 - - - - - - - - 0.870 zgc:173443 [Source:ZFIN;Acc:ZDB-GENE-071004-101]
76. si:ch211-14k19.8 ENSDARG00000088975 7 0.87 - - - - - - - - 0.870 si:ch211-14k19.8 [Source:ZFIN;Acc:ZDB-GENE-051214-4]
77. gdf10b ENSDARG00000073891 116 0.87 - - - - - - - - 0.870 growth differentiation factor 10b [Source:ZFIN;Acc:ZDB-GENE-120316-1]
78. SNORA63 SNORA63 7 0.87 - - - - - - - - 0.870
79. si:ch211-251f6.7 ENSDARG00000091558 25 0.869 - - - - - - - 0.869 - si:ch211-251f6.7 [Source:ZFIN;Acc:ZDB-GENE-091113-57]
80. si:dkey-65b12.13 si:dkey-65b12.13 7 0.869 - - - - - - - 0.869 -
81. mfsd9 ENSDARG00000074728 6 0.869 - - - - - - - 0.869 - major facilitator superfamily domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-070912-190]
82. flh flh 47 0.869 - - - - - - - 0.869 -
83. zgc:73340 823 0.869 - - - - - - - 0.869 - zgc:73340
84. si:dkey-97a13.12 ENSDARG00000095649 14 0.869 - - - - - - - 0.869 - si:dkey-97a13.12 [Source:ZFIN;Acc:ZDB-GENE-070912-614]
85. ssna1 ENSDARG00000101300 403 0.869 - 0.869 - - - - - - - Sjogren syndrome nuclear autoantigen 1 [Source:ZFIN;Acc:ZDB-GENE-081104-255]
86. si:ch211-273j9.2 si:ch211-273j9.2 79 0.869 - - - - - - 0.869 - -
87. si:ch211-120e1.7 ENSDARG00000094634 14 0.868 - - - - - - - - 0.868 si:ch211-120e1.7 [Source:ZFIN;Acc:ZDB-GENE-070424-119]
88. lox lox 7 0.868 - - - - - - - 0.868 -
89. si:dkeyp-118b1.2 ENSDARG00000079131 705 0.868 - - - - - - 0.868 - - si:dkeyp-118b1.2 [Source:ZFIN;Acc:ZDB-GENE-030131-7685]
90. slc9a5 ENSDARG00000078560 76 0.867 - - - - - - - 0.867 - solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5 [Source:ZFIN;Acc:ZDB-GENE-080225-43]
91. C7H10orf112 C7H10orf112 15 0.867 - - - - - - - 0.867 -
92. rpph1 33 0.867 - - - - - - - 0.867 - ribonuclease P RNA component H1
93. pcdh2g6 9 0.866 - - - - - - - - 0.866 protocadherin 2 gamma 6
94. mctp1b ENSDARG00000060871 20 0.866 - - - - - - - 0.866 - multiple C2 domains, transmembrane 1b [Source:ZFIN;Acc:ZDB-GENE-090313-382]
95. SNORA62 SNORA62 39 0.866 - 0.866 - - - - - - -
96. tmem150c ENSDARG00000069590 94 0.866 - - - - - - 0.866 - - transmembrane protein 150C [Source:ZFIN;Acc:ZDB-GENE-090112-5]
97. HYAL4 ENSDARG00000051823 67 0.866 - - - - - - - 0.866 - hyaluronoglucosaminidase 4 [Source:ZFIN;Acc:ZDB-GENE-061220-9]
98. bcl2 bcl2 5 0.866 - - - - - - - - 0.866
99. FAM46A FAM46A 81 0.864 - 0.864 - - - - - - -
100. timeless ENSDARG00000078497 1114 0.864 - 0.864 - - - - - - - timeless circadian clock [Source:ZFIN;Acc:ZDB-GENE-030131-8978]

There are 869 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA