Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for pif1

Gene Name Gene ID Reads Annotation
pif1 ENSDARG00000020289 216 PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4928]










Genes with expression patterns similar to pif1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. pif1 ENSDARG00000020289 216 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4928]
2. porcn ENSDARG00000052558, ENSDARG00000111556 110 2.814 0.893 1.000 - 0.921 - - - - - porcupine O-acyltransferase [Source:ZFIN;Acc:ZDB-GENE-081105-87]
3. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 2.676 0.860 1.000 - - - - - - 0.816 immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
4. CABZ01054405.1 CABZ01054405.1 115 1.987 - 1.000 - - - - - - 0.987
5. jph3 ENSDARG00000102204 175 1.981 - 1.000 - - - - - - 0.981 junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
6. si:dkey-153k10.9 ENSDARG00000004386, ENSDARG00000109564, ENSDARG00000111507 319 1.924 - 0.943 - - - - - - 0.981 si:dkey-153k10.9 [Source:ZFIN;Acc:ZDB-GENE-030131-3893]
7. si:ch211-133l11.10 ENSDARG00000005626 381 1.923 0.940 - - - - - - - 0.983 si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
8. CR376785.2 CR376785.2 175 1.894 - - - 0.911 - - - - 0.983
9. otpb ENSDARG00000058379 1143 1.893 0.893 1.000 - - - - - - - orthopedia homeobox b [Source:ZFIN;Acc:ZDB-GENE-990708-7]
10. CABZ01022575.2 CABZ01022575.2 83 1.878 1.000 - - - - 0.878 - - -
11. st8sia5 ENSDARG00000036584 529 1.859 - - - 0.878 - - - - 0.981 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
12. TUBB8P7_2 TUBB8P7_2 565 1.844 0.861 - - - - - - - 0.983
13. MAP3K6 MAP3K6 181 1.817 - 0.898 - 0.919 - - - - -
14. si:dkey-106c17.1 si:dkey-106c17.1 26 1.808 - 1.000 - - 0.808 - - - -
15. SNORA14 SNORA14 10 1.803 - 1.000 - - 0.803 - - - -
16. rbm34 ENSDARG00000101877 1573 1.79 - - - - - - 0.829 - 0.961 RNA binding motif protein 34 [Source:ZFIN;Acc:ZDB-GENE-040718-77]
17. sox12 ENSDARG00000025847 681 1.785 - 1.000 - - - - - - 0.785 SRY (sex determining region Y)-box 12 [Source:ZFIN;Acc:ZDB-GENE-040724-33]
18. nkx1.2lb ENSDARG00000099427 220 1.782 0.901 0.881 - - - - - - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
19. fbxo3 ENSDARG00000029242 529 1.77 - - - - - - 0.937 0.833 - F-box protein 3 [Source:ZFIN;Acc:ZDB-GENE-050522-269]
20. tom1l2 ENSDARG00000009217, ENSDARG00000111492 1639 1.766 - - - - - - 0.852 - 0.914 target of myb1 like 2 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-061013-3]
21. polr2c ENSDARG00000033596, ENSDARG00000111144, ENSDARG00000113715 1388 1.765 - - - - - - 0.872 - 0.893 polymerase (RNA) II (DNA directed) polypeptide C [Source:ZFIN;Acc:ZDB-GENE-030131-6609]
22. si:ch1073-291c23.2 ENSDARG00000074869 585 1.765 - - - 0.811 - - - - 0.954 si:ch1073-291c23.2 [Source:ZFIN;Acc:ZDB-GENE-081107-2]
23. GRIK3 ENSDARG00000077715 178 1.764 0.764 1.000 - - - - - - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
24. lmx1a ENSDARG00000020354 111 1.764 0.764 1.000 - - - - - - - LIM homeobox transcription factor 1, alpha [Source:ZFIN;Acc:ZDB-GENE-041014-332]
25. RIMS1 RIMS1 9 1.764 0.764 1.000 - - - - - - -
26. adrb1_1 ENSDARG00000007490, ENSDARG00000115574 9 1.764 0.764 1.000 - - - - - - - adrenoceptor beta 1 [Source:ZFIN;Acc:ZDB-GENE-081022-145]
27. crispld1a ENSDARG00000077275 7 1.764 0.764 1.000 - - - - - - - cysteine-rich secretory protein LCCL domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-090612-1]
28. si:ch211-286b5.9 ENSDARG00000086166 27 1.759 - 1.000 - - - 0.759 - - - si:ch211-286b5.9 [Source:ZFIN;Acc:ZDB-GENE-121214-63]
29. ttc9b ENSDARG00000068421 251 1.753 0.931 0.822 - - - - - - - tetratricopeptide repeat domain 9B [Source:ZFIN;Acc:ZDB-GENE-050419-67]
30. pvrl4 155 1.749 - 1.000 - - - - - 0.749 - poliovirus receptor-related 4
31. RLIM ENSDARG00000079306 514 1.735 - - - - - - 0.767 - 0.968 ring finger protein, LIM domain interacting [Source:ZFIN;Acc:ZDB-GENE-120809-2]
32. dkk3b ENSDARG00000070683 209 1.73 - - - - - - 0.747 - 0.983 dickkopf WNT signaling pathway inhibitor 3b [Source:ZFIN;Acc:ZDB-GENE-061207-74]
33. C14H5orf45 C14H5orf45 83 1.728 1.000 - - - - - - 0.728 -
34. ptprk ENSDARG00000063416 742 1.724 - - - - - - - 0.742 0.982 protein tyrosine phosphatase, receptor type, K [Source:ZFIN;Acc:ZDB-GENE-030131-9834]
35. AKAP12 AKAP12 140 1.723 0.739 - - - - - - - 0.984
36. rcbtb1 ENSDARG00000036645 255 1.721 - - - - - - 0.741 - 0.980 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7951]
37. ankrd37 ENSDARG00000056376 131 1.719 - 1.000 - - - 0.719 - - - ankyrin repeat domain 37 [Source:ZFIN;Acc:ZDB-GENE-070308-1]
38. sst2 ENSDARG00000014190 617 1.719 - 1.000 - - - 0.719 - - - somatostatin 2 [Source:ZFIN;Acc:ZDB-GENE-010219-2]
39. creg2 ENSDARG00000000666 643 1.711 - - - - - - 0.748 - 0.963 cellular repressor of E1A-stimulated genes 2 [Source:ZFIN;Acc:ZDB-GENE-041114-173]
40. INTU ENSDARG00000077639 158 1.709 - 1.000 - - - - 0.709 - - inturned planar cell polarity protein [Source:ZFIN;Acc:ZDB-GENE-110914-91]
41. zgc:173705 ENSDARG00000105137, ENSDARG00000114437 83 1.707 1.000 - - - - 0.707 - - - zgc:173705 [Source:ZFIN;Acc:ZDB-GENE-080212-6]
42. sc:d136 sc:d136 2 1.707 - 1.000 - - - 0.707 - - -
43. cyp46a4 cyp46a4 5 1.707 - 1.000 - - - 0.707 - - -
44. nol8 ENSDARG00000044143 425 1.704 0.722 - - - - - - - 0.982 nucleolar protein 8 [Source:ZFIN;Acc:ZDB-GENE-050208-491]
45. polr1d ENSDARG00000037570 860 1.702 - - - - - 0.771 - - 0.931 RNA polymerase I and III subunit D [Source:ZFIN;Acc:ZDB-GENE-040930-4]
46. slc16a8 ENSDARG00000045153 478 1.698 - - - - - 0.726 - - 0.972 solute carrier family 16 (monocarboxylate transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-121128-1]
47. ZNFX1 ENSDARG00000100280 118 1.697 - - - - - 0.707 - - 0.990 zinc finger, NFX1-type containing 1 [Source:ZFIN;Acc:ZDB-GENE-110804-2]
48. tmtc4 ENSDARG00000020447 873 1.686 - - - 0.744 - - - - 0.942 transmembrane and tetratricopeptide repeat containing 4 [Source:ZFIN;Acc:ZDB-GENE-070912-148]
49. rbfox3 rbfox3 1443 1.683 - 0.833 - - - - - - 0.850
50. CHRNB4 ENSDARG00000101677 128 1.681 0.735 0.946 - - - - - - - cholinergic receptor, nicotinic, beta 4 (neuronal) [Source:ZFIN;Acc:ZDB-GENE-120809-1]
51. sema4ab ENSDARG00000062352 409 1.678 - 0.702 - - - - - - 0.976 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
52. gnb5b ENSDARG00000055377 98 1.671 0.773 0.898 - - - - - - - guanine nucleotide binding protein (G protein), beta 5b [Source:ZFIN;Acc:ZDB-GENE-040426-1712]
53. gad2 ENSDARG00000015537 724 1.67 - 0.830 - - - - - - 0.840 glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
54. ksr2 ENSDARG00000094526 134 1.665 0.764 0.901 - - - - - - - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
55. rgs7 rgs7 208 1.661 0.715 0.946 - - - - - - -
56. snai3 ENSDARG00000031243 31 1.659 0.952 - - - - 0.707 - - - snail family zinc finger 3 [Source:ZFIN;Acc:ZDB-GENE-061013-757]
57. armc5 ENSDARG00000078083 114 1.658 - 0.889 - - 0.769 - - - - armadillo repeat containing 5 [Source:ZFIN;Acc:ZDB-GENE-030131-7382]
58. wdr48 wdr48 383 1.658 - - - - - - 0.805 0.853 -
59. napepld ENSDARG00000009252 228 1.656 - 0.806 - 0.850 - - - - - N-acyl phosphatidylethanolamine phospholipase D [Source:ZFIN;Acc:ZDB-GENE-030131-3856]
60. dtnbb ENSDARG00000013020 280 1.655 - 0.756 - 0.899 - - - - - dystrobrevin, beta b [Source:ZFIN;Acc:ZDB-GENE-070117-3]
61. fam151b ENSDARG00000020024 255 1.649 - - - - - 0.781 0.868 - - family with sequence similarity 151, member B [Source:ZFIN;Acc:ZDB-GENE-040801-38]
62. angptl4 ENSDARG00000035859 2701 1.648 - - - - - - - 0.803 0.845 angiopoietin-like 4 [Source:ZFIN;Acc:ZDB-GENE-041111-222]
63. zgc:173709 86 1.644 0.940 0.704 - - - - - - - zgc:173709
64. ppt2 ENSDARG00000104542 888 1.643 - - - - - - 0.731 - 0.912 palmitoyl-protein thioesterase 2 [Source:ZFIN;Acc:ZDB-GENE-010430-4]
65. anxa5b ENSDARG00000016470 2934 1.64 - - - 0.829 - - - - 0.811 annexin A5b [Source:ZFIN;Acc:ZDB-GENE-030131-9076]
66. rap2ip rap2ip 681 1.638 - 0.907 - 0.731 - - - - -
67. zgc:158320 ENSDARG00000099373 161 1.626 0.797 - - - - - 0.829 - - zgc:158320 [Source:ZFIN;Acc:ZDB-GENE-061201-33]
68. nploc4 ENSDARG00000100487 1262 1.623 0.703 - - - - - - - 0.920 NPL4 homolog, ubiquitin recognition factor [Source:ZFIN;Acc:ZDB-GENE-030131-5658]
69. st8sia2 ENSDARG00000018788 2183 1.618 0.709 - - - - - - - 0.909 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
70. CR376848.1 ENSDARG00000115549 149 1.612 - - - 0.847 - 0.765 - - - neutral cholesterol ester hydrolase 1-like [Source:NCBI gene;Acc:797436]
71. wdr35 ENSDARG00000069269 492 1.611 - - - - - - 0.748 0.863 - WD repeat domain 35 [Source:ZFIN;Acc:ZDB-GENE-060810-148]
72. zic6 ENSDARG00000071496 402 1.611 - 0.907 0.704 - - - - - - zic family member 6 [Source:ZFIN;Acc:ZDB-GENE-061207-1]
73. C25H11orf74 C25H11orf74 161 1.602 0.764 - - 0.838 - - - - -
74. neurod neurod 1189 1.601 0.785 0.816 - - - - - - -
75. DBNDD2 DBNDD2 216 1.599 - - - 0.875 - - 0.724 - -
76. CU041386.1 CU041386.1 126 1.595 0.801 - - - - - 0.794 - -
77. GPR17 ENSDARG00000062030 713 1.594 - - - - - - - 0.719 0.875 G protein-coupled receptor 17 [Source:ZFIN;Acc:ZDB-GENE-100922-133]
78. tmem176l.3a ENSDARG00000098387 168 1.591 - - - 0.818 - - - 0.773 - transmembrane protein 176l.3a [Source:ZFIN;Acc:ZDB-GENE-080829-13]
79. odf3l2 36 1.585 - - - - - 0.794 - 0.791 - outer dense fiber of sperm tails 3-like 2
80. lhfpl3 ENSDARG00000021595 107 1.584 0.786 - - - 0.798 - - - - LHFPL tetraspan subfamily member 3 [Source:ZFIN;Acc:ZDB-GENE-040801-180]
81. tmem209 ENSDARG00000039340 1598 1.58 - - - - - - 0.757 - 0.823 transmembrane protein 209 [Source:ZFIN;Acc:ZDB-GENE-030131-2879]
82. slc1a2b ENSDARG00000102453 3136 1.577 - 0.829 - - - - - - 0.748 solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
83. si:dkey-190g11.3 ENSDARG00000025914 49 1.576 0.760 0.816 - - - - - - - si:dkey-190g11.3 [Source:ZFIN;Acc:ZDB-GENE-081104-341]
84. NPDC1 NPDC1 126 1.566 0.764 0.802 - - - - - - -
85. si:ch1073-418f12.2 si:ch1073-418f12.2 15 1.564 0.764 - - - - - 0.800 - -
86. si:ch211-286e11.3 si:ch211-286e11.3 20 1.564 0.764 - - - - - 0.800 - -
87. mecr ENSDARG00000032326 314 1.563 - - - - - 0.702 0.861 - - mitochondrial trans-2-enoyl-CoA reductase [Source:ZFIN;Acc:ZDB-GENE-050417-399]
88. TIMM22 ENSDARG00000091413 957 1.555 - - - 0.807 - 0.748 - - - translocase of inner mitochondrial membrane 22 [Source:HGNC Symbol;Acc:HGNC:17317]
89. si:ch211-67e16.2 41 1.555 - - - - - 0.728 0.827 - - si:ch211-67e16.2, transcript variant X2
90. dbx2 2971 1.551 0.770 0.781 - - - - - - - developing brain homeobox 2
91. glg1b ENSDARG00000101210 177 1.545 - - - 0.823 - - 0.722 - - golgi glycoprotein 1b [Source:ZFIN;Acc:ZDB-GENE-060825-255]
92. C12H17orf62_1 C12H17orf62_1 83 1.544 - - - - - 0.707 0.837 - -
93. si:ch73-280o22.2 ENSDARG00000077072 67 1.544 0.764 - - - - - 0.780 - - si:ch73-280o22.2 [Source:ZFIN;Acc:ZDB-GENE-141216-272]
94. CABZ01071530.2 CABZ01071530.2 47 1.53 - 0.704 - - - - - 0.826 -
95. CHL1 CHL1 1553 1.524 - 0.723 - - - - - - 0.801
96. rheb ENSDARG00000090213 1432 1.512 0.759 - - - - - - - 0.753 Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
97. qdprb1 ENSDARG00000037378, ENSDARG00000115067, ENSDARG00000115308 338 1.511 0.776 - - - - - 0.735 - - quinoid dihydropteridine reductase b1 [Source:ZFIN;Acc:ZDB-GENE-050522-320]
98. ranbp9 ENSDARG00000061048 2687 1.505 - - - - - - 0.712 - 0.793 RAN binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-021030-5]
99. mfsd6l ENSDARG00000014761 60 1.494 - - - - - 0.707 - 0.787 - major facilitator superfamily domain containing 6-like [Source:ZFIN;Acc:ZDB-GENE-040801-105]
100. zgc:113411 ENSDARG00000038133, ENSDARG00000112781 68 1.489 - - - - - 0.701 - 0.788 - zgc:113411 [Source:ZFIN;Acc:ZDB-GENE-050417-474]

There are 2104 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA