Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for phf3

Gene Name Gene ID Reads Annotation
phf3 ENSDARG00000034768 1372 PHD finger protein 3 [Source:ZFIN;Acc:ZDB-GENE-090313-207]










Genes with expression patterns similar to phf3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. phf3 ENSDARG00000034768 1372 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PHD finger protein 3 [Source:ZFIN;Acc:ZDB-GENE-090313-207]
2. tmem50a ENSDARG00000015757 3244 2.608 - - 0.970 - - - 0.704 0.934 - transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]
3. rapgef2 ENSDARG00000005482 2586 1.888 - - 0.984 - - - - 0.904 - Rap guanine nucleotide exchange factor (GEF) 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6959]
4. ubxn6 ENSDARG00000003087, ENSDARG00000113404 431 1.877 - - - - - 0.887 - 0.990 - UBX domain protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5680]
5. cactin ENSDARG00000059866 553 1.849 - - 0.985 0.864 - - - - - cactin [Source:ZFIN;Acc:ZDB-GENE-060503-322]
6. dhx34 ENSDARG00000061168 349 1.839 - - 0.977 0.862 - - - - - DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Source:ZFIN;Acc:ZDB-GENE-061207-30]
7. uros ENSDARG00000027491 1147 1.838 - - - - - 0.892 - 0.946 - uroporphyrinogen III synthase [Source:ZFIN;Acc:ZDB-GENE-040323-2]
8. snai1b ENSDARG00000046019 886 1.833 - - 0.963 - - 0.870 - - - snail family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-980526-514]
9. ccdc6a ENSDARG00000043334, ENSDARG00000112924 1774 1.832 - - 0.960 - - 0.872 - - - coiled-coil domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-7848]
10. MSL1_1 MSL1_1 2365 1.791 - - 0.967 - - 0.824 - - -
11. zgc:171566 ENSDARG00000105118 340 1.784 - - - - - 0.795 - 0.989 - zgc:171566 [Source:ZFIN;Acc:ZDB-GENE-050309-193]
12. spg11 ENSDARG00000045968 542 1.779 - - - - - 0.845 - 0.934 - spastic paraplegia 11 [Source:ZFIN;Acc:ZDB-GENE-101017-1]
13. TMEM30B ENSDARG00000054122 1519 1.778 - - 0.962 - - - 0.816 - - transmembrane protein 30B [Source:ZFIN;Acc:ZDB-GENE-040704-17]
14. phf10 ENSDARG00000070084 1210 1.768 - - 0.969 - - 0.799 - - - PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]
15. chst13 chst13 669 1.762 - - 0.949 - - 0.813 - - -
16. ddx42 ENSDARG00000037928 1659 1.762 - - - - - 0.792 - 0.970 - DEAD (Asp-Glu-Ala-Asp) box helicase 42 [Source:ZFIN;Acc:ZDB-GENE-050706-53]
17. wnt2 ENSDARG00000041117, ENSDARG00000115436 242 1.749 - - - - - 0.759 - 0.990 - wingless-type MMTV integration site family member 2 [Source:ZFIN;Acc:ZDB-GENE-980526-416]
18. rad18 ENSDARG00000027938 574 1.749 - - 0.977 - - - 0.772 - - RAD18 E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-745]
19. rybpb ENSDARG00000053459 1464 1.748 - - 0.975 0.773 - - - - - RING1 and YY1 binding protein b [Source:ZFIN;Acc:ZDB-GENE-061103-96]
20. CT990561.1 ENSDARG00000058284 566 1.739 - - 0.951 - - 0.788 - - - EPH receptor A5 [Source:NCBI gene;Acc:797595]
21. crmp1 ENSDARG00000056742 332 1.737 - - - - - 0.754 - 0.983 - collapsin response mediator protein 1 [Source:ZFIN;Acc:ZDB-GENE-050720-1]
22. rnf121 ENSDARG00000060282 1809 1.733 - 0.794 0.939 - - - - - - ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
23. yipf3 ENSDARG00000020449 3312 1.732 - 0.825 - - - - - 0.907 - Yip1 domain family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6443]
24. CDKN1C CDKN1C 667 1.727 - - - - - 0.749 - 0.978 -
25. ek1 ENSDARG00000020080 742 1.727 - - 0.978 - - 0.749 - - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
26. fkbp7 ENSDARG00000010962 2986 1.723 - 0.796 - - - - - 0.927 - FK506 binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-030616-182]
27. si:dkey-66i24.9 ENSDARG00000096689 796 1.723 - - 0.976 0.747 - - - - - si:dkey-66i24.9 [Source:ZFIN;Acc:ZDB-GENE-130531-63]
28. spopla ENSDARG00000010563 775 1.722 - - 0.902 0.820 - - - - - speckle-type POZ protein-like a [Source:ZFIN;Acc:ZDB-GENE-050320-3]
29. tmem2 2572 1.72 - - 0.962 - - 0.758 - - - transmembrane protein 2, transcript variant X1
30. nop10 ENSDARG00000104227 2463 1.72 - 0.740 - - - - - 0.980 - NOP10 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-041007-4]
31. tnfaip3 ENSDARG00000027777 1066 1.717 - - 0.975 - - 0.742 - - - tumor necrosis factor, alpha-induced protein 3 [Source:ZFIN;Acc:ZDB-GENE-100212-2]
32. setd8a 2549 1.712 - - 0.959 - - - - 0.753 - SET domain containing (lysine methyltransferase) 8a
33. rasal2 ENSDARG00000036257 3223 1.711 - - - 0.766 - - - 0.945 - RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
34. GIGYF1_1 GIGYF1_1 1865 1.71 - - 0.976 - - 0.734 - - -
35. tfe3a ENSDARG00000098903 1530 1.709 - - - - - 0.734 - 0.975 - transcription factor binding to IGHM enhancer 3a [Source:ZFIN;Acc:ZDB-GENE-010919-2]
36. yaf2 ENSDARG00000015966 1905 1.708 - - 0.970 - - - 0.738 - - YY1 associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-041210-115]
37. alox12 ENSDARG00000069463 5787 1.701 - - 0.856 - - - - 0.845 - arachidonate 12-lipoxygenase [Source:ZFIN;Acc:ZDB-GENE-030131-1452]
38. FRRS1_1 FRRS1_1 831 1.699 - 0.719 - - - - - 0.980 -
39. rbfox2 ENSDARG00000052182 6621 1.696 - - 0.741 - - - - 0.955 - RNA binding fox-1 homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2464]
40. tial1 ENSDARG00000009525 1856 1.693 - 0.714 0.979 - - - - - - TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1547]
41. syncripl ENSDARG00000026723 3889 1.692 - 0.743 - - - - - 0.949 - synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
42. mri1 ENSDARG00000075754 2567 1.69 - 0.725 0.965 - - - - - - methylthioribose-1-phosphate isomerase 1 [Source:ZFIN;Acc:ZDB-GENE-080204-109]
43. arl6ip4 ENSDARG00000105036, ENSDARG00000110324, ENSDARG00000116805 1142 1.681 - - 0.978 - - 0.703 - - - ADP-ribosylation factor-like 6 interacting protein 4 [Source:ZFIN;Acc:ZDB-GENE-050522-405]
44. lsm12a ENSDARG00000028848, ENSDARG00000115800 3499 1.676 - 0.708 - - - - - 0.968 - LSM12 homolog a [Source:ZFIN;Acc:ZDB-GENE-040516-12]
45. ginm1 ENSDARG00000021975 1393 1.674 - 0.870 - - - 0.804 - - - glycoprotein integral membrane 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5900]
46. exoc6 ENSDARG00000020521 1533 1.673 - - 0.966 - - 0.707 - - - exocyst complex component 6 [Source:ZFIN;Acc:ZDB-GENE-040426-2511]
47. esrp1 ENSDARG00000011245 2097 1.671 - - - - - - 0.728 0.943 - epithelial splicing regulatory protein 1 [Source:ZFIN;Acc:ZDB-GENE-070112-1732]
48. ogt.1 ENSDARG00000099455, ENSDARG00000105243 3274 1.667 - - - - - - 0.795 0.872 - O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9631]
49. syne2b ENSDARG00000053484 9225 1.666 - 0.727 - - - - - 0.939 - spectrin repeat containing, nuclear envelope 2b [Source:ZFIN;Acc:ZDB-GENE-071218-5]
50. rtf1 ENSDARG00000008947 6596 1.663 - - 0.849 - - - - 0.814 - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
51. ppp4ca ENSDARG00000070570 8395 1.656 - - - 0.707 - - - 0.949 - protein phosphatase 4, catalytic subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-4433]
52. smg7 ENSDARG00000060767 2759 1.638 - - - - - - 0.757 0.881 - SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
53. calhm2 ENSDARG00000039482 138 1.636 - - - 0.748 - 0.888 - - - calcium homeostasis modulator 2 [Source:ZFIN;Acc:ZDB-GENE-030616-561]
54. edf1 ENSDARG00000009950 10518 1.634 - 0.705 - - - - - 0.929 - endothelial differentiation-related factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1710]
55. bcat2 ENSDARG00000054849 4317 1.624 - 0.706 0.918 - - - - - - branched chain amino-acid transaminase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-040718-425]
56. ATG4D ATG4D 648 1.621 - - - - - 0.801 0.820 - -
57. SHISA4 ENSDARG00000006307, ENSDARG00000112041 4884 1.611 - 0.732 - - - - - 0.879 - shisa family member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-419]
58. pknox2 ENSDARG00000055349 784 1.609 - - - - - 0.836 - 0.773 - pbx/knotted 1 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-031118-112]
59. gtpbp10 ENSDARG00000040300 533 1.607 - - - 0.797 - 0.810 - - - GTP-binding protein 10 (putative) [Source:ZFIN;Acc:ZDB-GENE-040718-153]
60. commd3 ENSDARG00000045402 1601 1.605 - - - - - 0.807 0.798 - - COMM domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-041219-3]
61. cx30.3 ENSDARG00000042707, ENSDARG00000116331 2399 1.599 - - - - - - 0.743 0.856 - connexin 30.3 [Source:ZFIN;Acc:ZDB-GENE-040406-1]
62. nr2f1a ENSDARG00000052695 5037 1.594 - - 0.878 - - 0.716 - - - nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
63. fancd2 ENSDARG00000053574 247 1.589 - 0.707 - - - 0.882 - - - FA complementation group D2 [Source:ZFIN;Acc:ZDB-GENE-040116-5]
64. bmp2a ENSDARG00000013409 303 1.586 - - - - - 0.876 0.710 - - bone morphogenetic protein 2a [Source:ZFIN;Acc:ZDB-GENE-980526-388]
65. ptgs2a ENSDARG00000004539 1207 1.586 - - - - - 0.845 0.741 - - prostaglandin-endoperoxide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020530-2]
66. bcr ENSDARG00000079286 578 1.585 - - - 0.755 - 0.830 - - - breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
67. tapbp tapbp 70 1.576 - - - - - 0.834 0.742 - -
68. prelid1a ENSDARG00000098671 4745 1.572 - 0.846 - - - - 0.726 - - PRELI domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1341]
69. AL929434.1 AL929434.1 3294 1.571 - - - - - - 0.716 0.855 -
70. BX470254.1_1 ENSDARG00000097402 50 1.567 - - - - - 0.862 0.705 - -
71. arhgap11a ENSDARG00000100019 1642 1.565 - - - - - 0.796 0.769 - - Rho GTPase activating protein 11A [Source:ZFIN;Acc:ZDB-GENE-040426-2562]
72. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 1.563 - - 0.858 - - - 0.705 - - ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
73. flrt3 ENSDARG00000076895 3516 1.562 0.708 - - - - 0.854 - - - fibronectin leucine rich transmembrane 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1988]
74. rangap1a ENSDARG00000041317 1456 1.549 - 0.759 - - - 0.790 - - - RAN GTPase activating protein 1a [Source:ZFIN;Acc:ZDB-GENE-060929-492]
75. slc7a3a ENSDARG00000020645 1458 1.548 - - - 0.734 - 0.814 - - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 3a [Source:ZFIN;Acc:ZDB-GENE-041114-206]
76. cdh6 ENSDARG00000014522 5492 1.543 - - 0.718 - - - - 0.825 - cadherin 6 [Source:ZFIN;Acc:ZDB-GENE-050320-92]
77. usb1 ENSDARG00000003841 524 1.54 - - - 0.735 - 0.805 - - - U6 snRNA biogenesis 1 [Source:ZFIN;Acc:ZDB-GENE-040801-197]
78. FAM126B 588 1.54 - 0.721 - - - 0.819 - - - family with sequence similarity 126 member B
79. ubn2 ubn2 534 1.538 - - - - - 0.715 0.823 - -
80. r3hdm1 ENSDARG00000101458 5241 1.536 0.719 - - - - - - 0.817 - R3H domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7119]
81. cdc20 ENSDARG00000100741 3264 1.536 - 0.713 - - - - 0.823 - - cell division cycle 20 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2044]
82. csde1_1 ENSDARG00000074758 2759 1.533 - 0.758 - 0.775 - - - - - cold shock domain containing E1, RNA-binding [Source:ZFIN;Acc:ZDB-GENE-030131-8623]
83. casc3 ENSDARG00000029911 1174 1.525 0.701 - - - - 0.824 - - - casc3, exon junction complex subunit [Source:ZFIN;Acc:ZDB-GENE-040308-2]
84. bop1 ENSDARG00000063627 643 1.518 - - - 0.793 - - 0.725 - - block of proliferation 1 [Source:ZFIN;Acc:ZDB-GENE-030219-109]
85. plk1 ENSDARG00000058471, ENSDARG00000111745 7020 1.514 - - - - - 0.773 - 0.741 - polo-like kinase 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-021115-7]
86. tox4 tox4 1671 1.511 0.713 - - - - 0.798 - - -
87. ube3c ENSDARG00000035978, ENSDARG00000112229 787 1.508 - - - 0.704 - 0.804 - - - ubiquitin protein ligase E3C [Source:ZFIN;Acc:ZDB-GENE-040426-1211]
88. golph3 ENSDARG00000052851, ENSDARG00000109334 2114 1.506 - - - - - - 0.775 0.731 - golgi phosphoprotein 3 [Source:ZFIN;Acc:ZDB-GENE-041010-209]
89. tnni2a.2 ENSDARG00000005841 483 1.5 - - - 0.765 - 0.735 - - - troponin I type 2a (skeletal, fast), tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040426-970]
90. rab6bb ENSDARG00000031343 1381 1.498 - - - 0.757 - 0.741 - - - RAB6B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-050320-28]
91. skia ENSDARG00000042151 1850 1.489 - - - 0.761 - - 0.728 - - v-ski avian sarcoma viral oncogene homolog a [Source:ZFIN;Acc:ZDB-GENE-990715-9]
92. srfa ENSDARG00000053918 1773 1.487 0.762 - - - - 0.725 - - - serum response factor a [Source:ZFIN;Acc:ZDB-GENE-990714-29]
93. mboat7 ENSDARG00000033436 848 1.485 - - - - - 0.701 0.784 - - membrane bound O-acyltransferase domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1516]
94. CU571336.1 ENSDARG00000099892 2164 1.484 - 0.767 - - - - 0.717 - -
95. arhgef2 ENSDARG00000075819 2173 1.484 - - - - - 0.708 0.776 - - rho/rac guanine nucleotide exchange factor (GEF) 2 [Source:ZFIN;Acc:ZDB-GENE-030717-1]
96. cmc1 ENSDARG00000103670 1197 1.482 - 0.730 - 0.752 - - - - - C-x(9)-C motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2626]
97. egfl7 ENSDARG00000100657 776 1.48 - 0.775 - 0.705 - - - - - EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
98. sas sas 1783 1.478 - 0.724 - - - 0.754 - - -
99. ap2b1 ENSDARG00000035152 2912 1.478 - - - - - 0.726 0.752 - - adaptor related protein complex 2 subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6564]
100. fbrsl1 ENSDARG00000058232 885 1.475 - - - 0.758 - 0.717 - - - fibrosin-like 1 [Source:ZFIN;Acc:ZDB-GENE-070705-487]

There are 1966 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA