Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for pdlim7

Gene Name Gene ID Reads Annotation
pdlim7 ENSDARG00000103854 465 PDZ and LIM domain 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2092]










Genes with expression patterns similar to pdlim7

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. pdlim7 ENSDARG00000103854 465 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PDZ and LIM domain 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2092]
2. MYOT ENSDARG00000076312 1791 3.801 0.730 0.784 - 0.785 - 0.768 0.734 - - myotilin [Source:ZFIN;Acc:ZDB-GENE-110411-129]
3. NRAP ENSDARG00000009341 3565 3.119 0.762 0.702 - - - 0.840 0.815 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
4. ATP5J_2 ATP5J_2 2381 2.485 - 0.925 - - - 0.761 0.799 - -
5. sptb ENSDARG00000030490 7128 2.452 - 0.793 - - - 0.834 0.825 - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
6. vwde ENSDARG00000103443 5758 2.436 - 0.859 - - - 0.756 0.821 - - von Willebrand factor D and EGF domains [Source:ZFIN;Acc:ZDB-GENE-060929-1226]
7. bmpr1bb ENSDARG00000102742 1036 2.422 0.732 - - - - 0.820 0.870 - - bone morphogenetic protein receptor, type IBb [Source:ZFIN;Acc:ZDB-GENE-090610-1]
8. limch1a ENSDARG00000074275 2981 2.401 - 0.865 - - - 0.774 0.762 - - LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]
9. tnnt2d ENSDARG00000002988 7590 2.393 0.799 0.826 - - - - 0.768 - - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
10. tgfbi ENSDARG00000071586 17779 2.383 0.712 - - - - 0.899 0.772 - - transforming growth factor, beta-induced [Source:ZFIN;Acc:ZDB-GENE-030131-73]
11. smtnl1 ENSDARG00000041257 7410 2.383 0.729 - - - - 0.852 0.802 - - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
12. zgc:92518 ENSDARG00000016343 3837 2.382 0.762 - - - - 0.814 0.806 - - zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
13. ubac1 ENSDARG00000059722, ENSDARG00000113910 1375 2.367 - 0.857 - - - 0.730 0.780 - - UBA domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9372]
14. BX323459.1 ENSDARG00000109508 1476 2.357 0.728 - - - - 0.826 0.803 - -
15. dtnba ENSDARG00000077694 5483 2.351 0.790 0.718 - - - 0.843 - - - dystrobrevin, beta a [Source:ZFIN;Acc:ZDB-GENE-030131-3967]
16. BX470254.1 ENSDARG00000097402 1389 2.342 0.721 - - - - 0.901 0.720 - -
17. klhl40a ENSDARG00000039052 2537 2.341 - 0.773 - - - 0.802 0.766 - - kelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
18. pygma ENSDARG00000055518 15972 2.332 0.735 0.810 - - - - 0.787 - - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
19. myhc4 ENSDARG00000035438 1322 2.329 - 0.710 - - - 0.780 0.839 - - myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
20. ptrfa ptrfa 4363 2.323 0.728 0.762 - - - 0.833 - - -
21. ryr1b ENSDARG00000023797 5693 2.321 - 0.762 - 0.766 - - 0.793 - - ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
22. C13H10orf71 3489 2.32 0.776 0.749 - - - - 0.795 - - chromosome 13 C10orf71 homolog
23. ryr3 ENSDARG00000071331 6795 2.309 - 0.719 - - - 0.833 0.757 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
24. IGSF10 ENSDARG00000077497 317 2.305 - - - - - 0.794 0.723 0.788 - immunoglobulin superfamily, member 10 [Source:ZFIN;Acc:ZDB-GENE-130530-827]
25. myoz2b ENSDARG00000037266 2139 2.297 0.743 0.813 - - - - 0.741 - - myozenin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1853]
26. srl ENSDARG00000104587 11126 2.296 0.702 0.741 - - - - 0.853 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
27. ITGB1BP2 ENSDARG00000030176 2472 2.293 - 0.776 - - - 0.717 0.800 - - integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
28. MUSTN1 MUSTN1 1882 2.267 0.721 0.723 - - - - 0.823 - -
29. zgc:158296 ENSDARG00000070923 3935 2.264 - 0.751 - - - 0.701 0.812 - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
30. fxr2 ENSDARG00000016260, ENSDARG00000116730 10030 2.258 0.716 - - - - 0.763 0.779 - - fragile X mental retardation, autosomal homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-943]
31. DNAJA4 ENSDARG00000051762 5657 2.256 - 0.721 - - - 0.748 0.787 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
32. jph1a ENSDARG00000058603 2852 2.249 - 0.783 - - - 0.737 0.729 - - junctophilin 1a [Source:ZFIN;Acc:ZDB-GENE-040724-233]
33. CABZ01074435.1 CABZ01074435.1 4551 2.247 0.733 - - - - 0.739 0.775 - -
34. smyd1a ENSDARG00000009280 1503 2.225 0.703 - - - - 0.757 0.765 - - SET and MYND domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9825]
35. pbxip1a ENSDARG00000071015 4960 2.22 0.722 0.767 - - - - 0.731 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
36. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 2.209 - 0.727 - - - 0.754 0.728 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
37. znf648 ENSDARG00000104823 1918 2.162 0.728 0.704 - - - - 0.730 - - zinc finger protein 648 [Source:ZFIN;Acc:ZDB-GENE-120215-149]
38. cacng1 cacng1 3118 2.158 - 0.705 - - - 0.745 0.708 - -
39. lims2 ENSDARG00000014976 1248 1.749 - - - - - 0.814 0.935 - - LIM and senescent cell antigen-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-050522-56]
40. CR392006.1 CR392006.1 1401 1.7 - - - - - 0.876 0.824 - -
41. cyp1d1 ENSDARG00000035569 628 1.682 - - - - - 0.786 0.896 - - cytochrome P450, family 1, subfamily D, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-041114-179]
42. si:ch211-152c2.3 ENSDARG00000045898 3448 1.664 - - - - - 0.841 0.823 - - si:ch211-152c2.3 [Source:ZFIN;Acc:ZDB-GENE-030131-9914]
43. cacna2d1a ENSDARG00000014804 1924 1.661 - 0.784 - - - - 0.877 - - calcium channel, voltage-dependent, alpha 2/delta subunit 1a [Source:ZFIN;Acc:ZDB-GENE-041210-215]
44. sspn ENSDARG00000041747, ENSDARG00000114109, ENSDARG00000114643 1228 1.656 - - - - - 0.795 0.861 - - sarcospan (Kras oncogene-associated gene) [Source:ZFIN;Acc:ZDB-GENE-051127-43]
45. mir133b_1 671 1.653 - 0.758 - - - - 0.895 - - microRNA 133b
46. tgm2a ENSDARG00000070157 4516 1.651 - - - - - 0.868 0.783 - - transglutaminase 2, C polypeptide A [Source:ZFIN;Acc:ZDB-GENE-040912-78]
47. trim101 ENSDARG00000018264 827 1.65 0.849 - - - - - 0.801 - - tripartite motif containing 101 [Source:ZFIN;Acc:ZDB-GENE-040801-100]
48. smpx ENSDARG00000045302 2175 1.649 - - - - - 0.836 0.813 - - small muscle protein X-linked [Source:ZFIN;Acc:ZDB-GENE-040704-24]
49. tmem182 tmem182 12589 1.634 - - - - - 0.811 0.823 - -
50. CABZ01080590.2 CABZ01080590.2 2038 1.626 0.774 - - - - - 0.852 - -
51. CABZ01044297.1 CABZ01044297.1 2015 1.623 0.771 - - - - 0.852 - - -
52. col9a3 ENSDARG00000037845 6564 1.619 0.783 - - - - 0.836 - - - collagen, type IX, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9799]
53. ppapdc3 ppapdc3 4924 1.615 - - - - - 0.806 0.809 - -
54. pvalb4 ENSDARG00000024433 35736 1.615 0.807 - - - - - 0.808 - - parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
55. TMPO TMPO 3264 1.615 - 0.860 - - - - 0.755 - -
56. gypc ENSDARG00000041546 1487 1.612 - 0.784 - - - - 0.828 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
57. klhl41b ENSDARG00000006757 10762 1.611 - - - - - 0.794 0.817 - - kelch-like family member 41b [Source:ZFIN;Acc:ZDB-GENE-030131-9875]
58. serpinf1 ENSDARG00000069048 2083 1.611 - 0.813 - - - - 0.798 - - serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 [Source:ZFIN;Acc:ZDB-GENE-040912-2]
59. PHB2 PHB2 3755 1.61 0.742 0.868 - - - - - - -
60. myom1a ENSDARG00000061249 10230 1.608 - - - - - 0.813 0.795 - - myomesin 1a (skelemin) [Source:ZFIN;Acc:ZDB-GENE-030131-2856]
61. alpk3a ENSDARG00000078989 1992 1.604 - 0.812 - - - 0.792 - - - alpha-kinase 3a [Source:ZFIN;Acc:ZDB-GENE-050419-48]
62. tnnc1b ENSDARG00000037539 13945 1.602 - 0.819 - - - - 0.783 - - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
63. PTPLA PTPLA 4044 1.601 - 0.800 - - - - 0.801 - -
64. CU467854.2 CU467854.2 298 1.6 - - - 0.788 - - 0.812 - -
65. xirp2a ENSDARG00000071113 7113 1.595 0.710 - - - - - 0.885 - - xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
66. cap2 ENSDARG00000104478 3266 1.594 - - - - - 0.727 0.867 - - CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
67. pfkmb ENSDARG00000060797, ENSDARG00000109412, ENSDARG00000109653, ENSDARG00000115422 3323 1.593 - - - - - 0.762 0.831 - - phosphofructokinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-081114-1]
68. MYPN 404 1.592 0.731 - - 0.861 - - - - - myopalladin, transcript variant X1
69. nexn ENSDARG00000057317 10972 1.591 - - - - - 0.800 0.791 - - nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
70. si:ch211-114n24.7 si:ch211-114n24.7 2544 1.588 - 0.760 - - - - 0.828 - -
71. tspan12 ENSDARG00000032389 419 1.587 - - - - - 0.748 0.839 - - tetraspanin 12 [Source:ZFIN;Acc:ZDB-GENE-040426-1285]
72. txlnbb ENSDARG00000076241 6396 1.586 - 0.812 - - - - 0.774 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
73. AIMP1 ENSDARG00000060036 4136 1.585 - 0.759 - - - 0.826 - - - aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:ZFIN;Acc:ZDB-GENE-060825-144]
74. hsc70 ENSDARG00000012381 961 1.581 - - - - - 0.750 0.831 - - heat shock cognate 70 [Source:ZFIN;Acc:ZDB-GENE-040426-1221]
75. myod1 ENSDARG00000030110 6019 1.58 - - - - - 0.778 0.802 - - myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
76. pvalb3 ENSDARG00000022817, ENSDARG00000117131 4180 1.576 - 0.717 - - - 0.859 - - - parvalbumin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-945]
77. STIM2 STIM2 644 1.575 - - - - - 0.781 0.794 - -
78. unc45b ENSDARG00000008433 8298 1.575 0.724 - - - - - 0.851 - - unc-45 myosin chaperone B [Source:ZFIN;Acc:ZDB-GENE-020919-3]
79. dyrk2 ENSDARG00000094646 2163 1.574 - 0.803 - - - - 0.771 - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2804]
80. dhrs7c dhrs7c 1173 1.57 - - - - - 0.774 0.796 - -
81. casq1b ENSDARG00000018105 2643 1.567 - 0.719 - - - - 0.848 - - calsequestrin 1b [Source:ZFIN;Acc:ZDB-GENE-060929-1070]
82. fgf6a ENSDARG00000009351 799 1.567 - 0.751 - - - - 0.816 - - fibroblast growth factor 6a [Source:ZFIN;Acc:ZDB-GENE-980526-559]
83. PTGES3L PTGES3L 4801 1.566 - - - - - 0.804 0.762 - -
84. susd5 ENSDARG00000088277 439 1.566 0.761 - - - - 0.805 - - - sushi domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-120215-196]
85. stac3 ENSDARG00000098883 1765 1.565 - - - - - 0.837 0.728 - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
86. plod2 ENSDARG00000011821 1656 1.565 0.710 - - - - 0.855 - - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 [Source:ZFIN;Acc:ZDB-GENE-070326-1]
87. BX511021.1 ENSDARG00000073936 647 1.564 - 0.779 - - - 0.785 - - - ferritin, middle subunit-like [Source:NCBI gene;Acc:100006428]
88. grip2a ENSDARG00000087187 401 1.559 - 0.806 - - - - 0.753 - - glutamate receptor interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-081104-132]
89. tppp3 ENSDARG00000030463 992 1.559 0.780 - - - - 0.779 - - - tubulin polymerization-promoting protein family member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1909]
90. znf106a ENSDARG00000016651 6049 1.558 - 0.742 - - - - 0.816 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
91. CU633479.5 ENSDARG00000114818 1815 1.557 - 0.753 - - - - 0.804 - -
92. epyc ENSDARG00000056950 7783 1.557 0.754 - - - - 0.803 - - - epiphycan [Source:ZFIN;Acc:ZDB-GENE-041008-9]
93. CR450814.3 CR450814.3 608 1.554 - 0.750 - - - 0.804 - - -
94. loxl5b ENSDARG00000076904 468 1.553 0.799 - - - - 0.754 - - - lysyl oxidase-like 5b [Source:ZFIN;Acc:ZDB-GENE-070818-3]
95. CR388002.1 CR388002.1 1998 1.553 0.806 0.747 - - - - - - -
96. TENC1 TENC1 1729 1.551 - - - - - 0.797 0.754 - -
97. murcb murcb 13655 1.551 0.768 - - - - - 0.783 - -
98. ldb3a ENSDARG00000056322, ENSDARG00000116388 2569 1.547 - - - - - 0.771 0.776 - - LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]
99. actn3b ENSDARG00000001431 15747 1.545 0.779 0.766 - - - - - - - actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
100. FHOD3_1 FHOD3_1 983 1.544 - - - - - 0.830 0.714 - -

There are 880 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA