Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for pdlim4

Gene Name Gene ID Reads Annotation
pdlim4 ENSDARG00000068973 2567 PDZ and LIM domain 4 [Source:ZFIN;Acc:ZDB-GENE-070308-5]










Genes with expression patterns similar to pdlim4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. pdlim4 ENSDARG00000068973 2567 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PDZ and LIM domain 4 [Source:ZFIN;Acc:ZDB-GENE-070308-5]
2. gapvd1 ENSDARG00000090183, ENSDARG00000113177 611 1.911 - - - - - - - 0.964 0.947 GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
3. CR293507.1 ENSDARG00000112572 3198 1.834 - - - - - - 1.000 - 0.834
4. CASKIN2_1 CASKIN2_1 2299 1.797 - - - - - - - 0.964 0.833
5. gpkow ENSDARG00000029612 1395 1.792 - - - - - - - 0.944 0.848 G patch domain and KOW motifs [Source:ZFIN;Acc:ZDB-GENE-030616-159]
6. stxbp3 ENSDARG00000008142 2604 1.782 - 0.834 - - - - - - 0.948 syntaxin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2833]
7. psd3l ENSDARG00000104820 1201 1.781 - - - - - - - 0.908 0.873 pleckstrin and Sec7 domain containing 3, like [Source:ZFIN;Acc:ZDB-GENE-030131-8195]
8. rnf20 ENSDARG00000016664 3641 1.78 - - - - - - 1.000 - 0.780 ring finger protein 20, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-130404-2]
9. pnpla7b ENSDARG00000040002 1217 1.754 - - - 0.814 - - - - 0.940 patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
10. rarab ENSDARG00000034893, ENSDARG00000111757 2151 1.716 - 0.764 - - - - - - 0.952 retinoic acid receptor, alpha b [Source:ZFIN;Acc:ZDB-GENE-980526-72]
11. C21H5orf15 C21H5orf15 2318 1.715 - - - - - - - 0.931 0.784
12. fam3c ENSDARG00000056152 3833 1.701 - 0.786 - - - - - - 0.915 family with sequence similarity 3, member C [Source:ZFIN;Acc:ZDB-GENE-030131-6137]
13. atp6ap2 ENSDARG00000008735 5096 1.686 - - - - - - - 0.959 0.727 ATPase H+ transporting accessory protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1960]
14. ubap2l ENSDARG00000063219 1147 1.682 - - - - - 0.739 - - 0.943 ubiquitin associated protein 2-like [Source:ZFIN;Acc:ZDB-GENE-060503-244]
15. zgc:174906 ENSDARG00000075314 2187 1.681 - - - - - - - 0.879 0.802 zgc:174906 [Source:ZFIN;Acc:ZDB-GENE-030131-6125]
16. fdx1 ENSDARG00000056410, ENSDARG00000115831 3463 1.678 - - - - - 0.767 - 0.911 - ferredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-071015-2]
17. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 61276 1.674 - - - - - - 0.898 0.776 - ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
18. ide ENSDARG00000075570 4331 1.673 - 0.725 - - - - - - 0.948 insulin-degrading enzyme [Source:ZFIN;Acc:ZDB-GENE-070410-85]
19. clasp2 ENSDARG00000020345 3382 1.667 - 0.757 - - - - - - 0.910 cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
20. fam76b ENSDARG00000012432 2722 1.664 - 0.728 - - - - - 0.936 - family with sequence similarity 76, member B [Source:ZFIN;Acc:ZDB-GENE-030131-6955]
21. pacs1a ENSDARG00000044556, ENSDARG00000117043 914 1.658 0.773 - - - - - - - 0.885 phosphofurin acidic cluster sorting protein 1a [Source:ZFIN;Acc:ZDB-GENE-050208-244]
22. ddi2 ENSDARG00000006477 4190 1.658 - - - - - - - 0.874 0.784 DNA-damage inducible protein 2 [Source:ZFIN;Acc:ZDB-GENE-031030-15]
23. CHDH ENSDARG00000100304 2257 1.647 - 0.709 - - - - - 0.938 - choline dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-120111-1]
24. PACS1 PACS1 2061 1.643 0.755 - - - - - - - 0.888
25. shc1 ENSDARG00000075437 3278 1.636 - - - - - - - 0.899 0.737 SHC (Src homology 2 domain containing) transforming protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2538]
26. prpf4bb ENSDARG00000040310 2260 1.625 - 0.701 - - - - - 0.924 - pre-mRNA processing factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2799]
27. ndufs4 ENSDARG00000052840, ENSDARG00000110036 3441 1.614 - 0.712 - - - - - 0.902 - NADH:ubiquinone oxidoreductase subunit S4 [Source:ZFIN;Acc:ZDB-GENE-050522-421]
28. SNORD72 SNORD72 4018 1.607 - 0.766 - - - - - 0.841 -
29. idh3a ENSDARG00000030278 2983 1.602 - 0.767 - - - - - - 0.835 isocitrate dehydrogenase 3 (NAD+) alpha [Source:ZFIN;Acc:ZDB-GENE-040426-1007]
30. lmo4a ENSDARG00000013853, ENSDARG00000111873, ENSDARG00000113473 2584 1.594 - - - - - - - 0.823 0.771 LIM domain only 4a [Source:ZFIN;Acc:ZDB-GENE-010702-1]
31. fzd7a ENSDARG00000060004, ENSDARG00000115544 4171 1.588 - 0.702 - - - - - 0.886 - frizzled class receptor 7a [Source:ZFIN;Acc:ZDB-GENE-990415-223]
32. BX004812.1 ENSDARG00000096968 5467 1.582 - - - - - - - 0.878 0.704
33. gid8b ENSDARG00000037589 2121 1.558 0.741 0.817 - - - - - - - GID complex subunit 8 homolog b (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030515-4]
34. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 1.52 - 0.727 - - - - - 0.793 - immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
35. idh3b ENSDARG00000044753, ENSDARG00000110992 3965 1.519 - 0.780 - - - 0.739 - - - isocitrate dehydrogenase 3 (NAD+) beta [Source:ZFIN;Acc:ZDB-GENE-040625-174]
36. atp6v0b ENSDARG00000031681 4611 1.48 - - - - - - - 0.779 0.701 ATPase H+ transporting V0 subunit b [Source:ZFIN;Acc:ZDB-GENE-030131-443]
37. xpo1b ENSDARG00000063229 2529 1.469 - 0.750 - - - - - 0.719 - exportin 1 (CRM1 homolog, yeast) b [Source:ZFIN;Acc:ZDB-GENE-070530-6]
38. src ENSDARG00000008107 3643 1.448 - 0.734 - - - - - - 0.714 v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-030131-3809]
39. hes6 ENSDARG00000019335 4754 1 - - - - - - 1.000 - - hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
40. tmem5 1630 1 - - - - - - 1.000 - - transmembrane protein 5
41. cers2a ENSDARG00000013704 4239 1 - - - - - - 1.000 - - ceramide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020808-2]
42. si:dkey-42p8.3 1117 1 - - - - - - 1.000 - - si:dkey-42p8.3, transcript variant X1
43. XPR1 XPR1 3354 1 - - - - - - 1.000 - -
44. twf1a ENSDARG00000115712 3465 1 - - - - - - 1.000 - - twinfilin actin-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4402]
45. C7H16orf87 C7H16orf87 5197 1 - - - - - - 1.000 - -
46. smurf2 ENSDARG00000038067 2057 1 - - - - - - 1.000 - - SMAD specific E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1830]
47. VMA21 ENSDARG00000093945, ENSDARG00000113532 7555 1 - - - - - - 1.000 - - VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-081104-272]
48. csrp1a ENSDARG00000006603 5188 1 - - - - - - 1.000 - - cysteine and glycine-rich protein 1a [Source:ZFIN;Acc:ZDB-GENE-030909-4]
49. RB1CC1 ENSDARG00000076559 2771 1 - - - - - - 1.000 - - RB1-inducible coiled-coil 1 [Source:ZFIN;Acc:ZDB-GENE-130206-1]
50. acat2 ENSDARG00000007127 3052 1 - - - - - - 1.000 - - acetyl-CoA acetyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-990714-22]
51. slc22a7a ENSDARG00000056028 2426 1 - - - - - - 1.000 - - solute carrier family 22 (organic anion transporter), member 7a [Source:ZFIN;Acc:ZDB-GENE-050506-52]
52. epdl1 ENSDARG00000076386 1747 0.999 - - - - - - 0.999 - - ependymin-like 1 [Source:ZFIN;Acc:ZDB-GENE-090710-3]
53. st14a ENSDARG00000061173 3800 0.999 - - - - - - 0.999 - - suppression of tumorigenicity 14 (colon carcinoma) a [Source:ZFIN;Acc:ZDB-GENE-030131-6496]
54. SAMD4A ENSDARG00000075759 3282 0.999 - - - - - - 0.999 - - sterile alpha motif domain containing 4A [Source:ZFIN;Acc:ZDB-GENE-070720-7]
55. ARID3C ENSDARG00000067729, ENSDARG00000114447 8069 0.999 - - - - - - 0.999 - - AT rich interactive domain 3C (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-060526-12]
56. matn3a ENSDARG00000069245 2410 0.998 - - - - - - 0.998 - - matrilin 3a [Source:ZFIN;Acc:ZDB-GENE-040822-21]
57. sucla2 ENSDARG00000005359 5992 0.998 - - - - - - 0.998 - - succinate-CoA ligase, ADP-forming, beta subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1963]
58. si:ch211-166a6.5 ENSDARG00000079745 11111 0.997 - - - - - - 0.997 - - si:ch211-166a6.5 [Source:ZFIN;Acc:ZDB-GENE-030131-9913]
59. kars ENSDARG00000103799 20937 0.996 - - - - - - 0.996 - - lysyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-021115-8]
60. hp1bp3 ENSDARG00000044669 23708 0.995 - - - - - - 0.995 - - heterochromatin protein 1, binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060810-79]
61. nutf2 ENSDARG00000056531, ENSDARG00000115472 17177 0.995 - - - - - - 0.995 - - nuclear transport factor 2 [Source:ZFIN;Acc:ZDB-GENE-041010-77]
62. neb ENSDARG00000032630, ENSDARG00000109273 19493 0.994 - - - - - - 0.994 - - nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
63. serp1 ENSDARG00000099439 23682 0.991 - - - - - - 0.991 - - stress-associated endoplasmic reticulum protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8741]
64. murca murca 6614 0.989 - - - - - - 0.989 - -
65. COL2A1 COL2A1 18161 0.989 - - - - - - 0.989 - -
66. rps26 ENSDARG00000037071 40061 0.982 - - - - - - 0.982 - - ribosomal protein S26 [Source:ZFIN;Acc:ZDB-GENE-030131-8606]
67. eve1 ENSDARG00000056012 144 0.98 - - - - - - - - 0.980 even-skipped-like1 [Source:ZFIN;Acc:ZDB-GENE-980526-69]
68. actn3b ENSDARG00000001431 15747 0.979 - - - - - - 0.979 - - actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
69. ptgs1 ENSDARG00000052148 2443 0.979 - - - - - - - - 0.979 prostaglandin-endoperoxide synthase 1 [Source:ZFIN;Acc:ZDB-GENE-020530-1]
70. CCDC167 ENSDARG00000045850 1024 0.979 - - - - - - - - 0.979 coiled-coil domain containing 167 [Source:ZFIN;Acc:ZDB-GENE-041210-79]
71. PFKL_1 PFKL_1 298 0.979 - - - - - - - - 0.979
72. gpr1 ENSDARG00000101366 733 0.978 - - - - - - - - 0.978 G protein-coupled receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091204-457]
73. si:ch211-232i5.1 ENSDARG00000078072 1337 0.978 - - - - - - - - 0.978 si:ch211-232i5.1 [Source:ZFIN;Acc:ZDB-GENE-070705-127]
74. nfu1 ENSDARG00000068125 1743 0.976 - - - - - - - - 0.976 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050417-365]
75. FUZ ENSDARG00000079730 821 0.976 - - - - - - - - 0.976 fuzzy planar cell polarity protein [Source:ZFIN;Acc:ZDB-GENE-090609-2]
76. rps29 ENSDARG00000041232 71334 0.975 - - - - - - 0.975 - - ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
77. ecd ENSDARG00000022944, ENSDARG00000114710 273 0.975 - - - - - - - - 0.975 ecdysoneless homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6304]
78. casp2 ENSDARG00000062052 559 0.975 - - - - - - - - 0.975 caspase 2, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-030825-3]
79. kti12 ENSDARG00000054301, ENSDARG00000112513, ENSDARG00000114091 382 0.975 - - - - - - - - 0.975 KTI12 chromatin associated homolog [Source:ZFIN;Acc:ZDB-GENE-060825-174]
80. cd36 ENSDARG00000032639 288 0.974 - - - - - - - - 0.974 CD36 molecule (thrombospondin receptor) [Source:ZFIN;Acc:ZDB-GENE-040718-55]
81. si:ch211-89o5.1 si:ch211-89o5.1 91 0.973 - - - - - - - - 0.973
82. enpp6 ENSDARG00000040469 187 0.973 - - - - - - - - 0.973 ectonucleotide pyrophosphatase/phosphodiesterase 6 [Source:ZFIN;Acc:ZDB-GENE-031205-1]
83. si:dkey-246e3.4 ENSDARG00000086390 50 0.973 - - - - - - - - 0.973 si:dkey-246e3.4 [Source:ZFIN;Acc:ZDB-GENE-130531-58]
84. ERAP1_1 ERAP1_1 64 0.973 - - - - - - - - 0.973
85. CT030712.1 ENSDARG00000044355 83 0.973 - - - - - - - - 0.973 uncharacterized LOC100534830 [Source:NCBI gene;Acc:100534830]
86. myo18ab ENSDARG00000061862 124 0.973 - - - - - - - - 0.973 myosin XVIIIAb [Source:ZFIN;Acc:ZDB-GENE-080423-1]
87. CABZ01063402.1 CABZ01063402.1 64 0.973 - - - - - - - - 0.973
88. FAM83H FAM83H 190 0.973 - - - - - - - - 0.973
89. prkcbb ENSDARG00000022254 319 0.972 - - - - - - - - 0.972 protein kinase C, beta b [Source:ZFIN;Acc:ZDB-GENE-040426-1178]
90. mto1 ENSDARG00000055679 859 0.972 - - - - - - - - 0.972 mitochondrial tRNA translation optimization 1 [Source:ZFIN;Acc:ZDB-GENE-070209-253]
91. ACBD3 ENSDARG00000042623 159 0.972 - - - - - - - - 0.972 acyl-Coenzyme A binding domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1930]
92. smarcd2 ENSDARG00000088877 416 0.971 - - - - - - - - 0.971 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:ZFIN;Acc:ZDB-GENE-080215-1]
93. trim33l ENSDARG00000086126 241 0.971 - - - - - - - - 0.971 tripartite motif containing 33, like [Source:ZFIN;Acc:ZDB-GENE-030131-5695]
94. TIMP4 TIMP4 599 0.971 - - - - - - - - 0.971
95. CR388047.3 ENSDARG00000117023 89 0.971 - - - - - - - - 0.971
96. TPMT TPMT 138 0.971 - - - - - - - - 0.971
97. MIER3 MIER3 114 0.971 - - - - - - - - 0.971
98. per1b ENSDARG00000012499 320 0.971 - - - - - - - - 0.971 period circadian clock 1b [Source:ZFIN;Acc:ZDB-GENE-040419-1]
99. rnf165a ENSDARG00000077906 133 0.971 - - - - - - - - 0.971 ring finger protein 165a [Source:ZFIN;Acc:ZDB-GENE-091118-64]
100. zgc:112263 zgc:112263 473 0.97 - - - - - - - - 0.970

There are 931 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA