Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for pdlim3b

Gene Name Gene ID Reads Annotation
pdlim3b ENSDARG00000014248, ENSDARG00000111275 708 PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]










Genes with expression patterns similar to pdlim3b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. pdlim3b ENSDARG00000014248, ENSDARG00000111275 708 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]
2. NEURL2 ENSDARG00000062446, ENSDARG00000110488 483 3.137 0.774 0.724 - - - 0.937 0.702 - - neuralized E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-070410-31]
3. trim55b ENSDARG00000058158 586 2.545 - 0.776 - - - 0.933 0.836 - - tripartite motif containing 55b [Source:ZFIN;Acc:ZDB-GENE-060312-37]
4. lrrc8c ENSDARG00000099911 1499 2.439 - 0.766 - - - 0.856 0.817 - - leucine rich repeat containing 8 VRAC subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-2965]
5. ypel2b ENSDARG00000087258, ENSDARG00000116766 539 2.419 - 0.763 - - - - 0.712 0.944 - yippee-like 2b [Source:ZFIN;Acc:ZDB-GENE-110419-2]
6. reep1 ENSDARG00000014854 915 2.419 - 0.718 - - - - 0.755 0.946 - receptor accessory protein 1 [Source:ZFIN;Acc:ZDB-GENE-110411-267]
7. srpk3 ENSDARG00000005916 1546 2.387 - 0.736 - - - 0.804 0.847 - - SRSF protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-101025-2]
8. tgm1l1 ENSDARG00000102106 1437 2.387 0.767 0.769 - - - - 0.851 - - transglutaminase 1 like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-139]
9. enah ENSDARG00000032049 1526 2.363 - 0.763 - - - - 0.820 0.780 - enabled homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010323-11]
10. cand2 ENSDARG00000005749, ENSDARG00000109268, ENSDARG00000112192 356 2.354 0.776 0.815 - - - - 0.763 - - cullin-associated and neddylation-dissociated 2 (putative) [Source:ZFIN;Acc:ZDB-GENE-060503-645]
11. cx43 ENSDARG00000041799 2212 2.321 - 0.721 - - - 0.871 0.729 - - connexin 43 [Source:ZFIN;Acc:ZDB-GENE-991105-4]
12. CR392006.1 CR392006.1 1401 2.314 0.790 0.749 - - - - 0.775 - -
13. arpp21 ENSDARG00000061081 892 2.25 0.701 0.796 - - - - 0.753 - - cAMP-regulated phosphoprotein, 21 [Source:ZFIN;Acc:ZDB-GENE-081104-296]
14. BX649282.1 ENSDARG00000105704 347 1.888 - - - - - 0.961 - 0.927 -
15. si:ch211-51c14.1 ENSDARG00000054645, ENSDARG00000110953 2434 1.837 - - - - - 0.944 0.893 - - si:ch211-51c14.1 [Source:ZFIN;Acc:ZDB-GENE-120215-48]
16. si:ch73-173m3.3 si:ch73-173m3.3 425 1.837 - - - - - 0.950 - 0.887 -
17. myoz2a ENSDARG00000012311 1373 1.817 - 0.877 - - - - 0.940 - - myozenin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1880]
18. six1b ENSDARG00000026473 1908 1.806 - 0.855 - - - - 0.951 - - SIX homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2308]
19. nup88 ENSDARG00000003235, ENSDARG00000111135 1114 1.798 - - - - - 0.974 - 0.824 - nucleoporin 88 [Source:ZFIN;Acc:ZDB-GENE-050522-297]
20. smtnl1 ENSDARG00000041257 7410 1.792 - - - - - - 0.921 0.871 - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
21. rdh8b ENSDARG00000105060 183 1.789 - - - - - 0.949 - 0.840 - retinol dehydrogenase 8b [Source:ZFIN;Acc:ZDB-GENE-040426-1759]
22. chrna1 ENSDARG00000009021 2931 1.782 - 0.862 - - - - 0.920 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
23. optc ENSDARG00000014358 1295 1.779 - 0.800 - - - 0.979 - - - opticin [Source:ZFIN;Acc:ZDB-GENE-030131-1798]
24. dnajc18 ENSDARG00000056005 8084 1.778 - - - - - - 0.913 0.865 - DnaJ (Hsp40) homolog, subfamily C, member 18 [Source:ZFIN;Acc:ZDB-GENE-030131-8019]
25. asb2a asb2a 845 1.776 - 0.901 - - - - 0.875 - -
26. thbs3a ENSDARG00000077641 631 1.764 - - - - - 0.971 0.793 - - thrombospondin 3a [Source:ZFIN;Acc:ZDB-GENE-020708-3]
27. C13H10orf71 3489 1.76 - 0.822 - - - - 0.938 - - chromosome 13 C10orf71 homolog
28. sfrp2 ENSDARG00000070050, ENSDARG00000114620 1681 1.751 - 0.855 - - - - 0.896 - - secreted frizzled-related protein 2 [Source:ZFIN;Acc:ZDB-GENE-061013-293]
29. svila ENSDARG00000055075, ENSDARG00000110002, ENSDARG00000114888 4078 1.75 - - - - - - 0.850 0.900 - supervillin a [Source:ZFIN;Acc:ZDB-GENE-990706-5]
30. CABZ01005777.1 CABZ01005777.1 505 1.747 - - - 0.796 - 0.951 - - -
31. ATP5J 343 1.745 - - - - - - 0.851 0.894 - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6, transcript variant X2
32. rapsn ENSDARG00000041133, ENSDARG00000111358 1416 1.745 - 0.836 - - - - 0.909 - - receptor-associated protein of the synapse, 43kD [Source:ZFIN;Acc:ZDB-GENE-030313-1]
33. PCSK6 ENSDARG00000104574 710 1.745 - - - - - 0.975 - 0.770 - proprotein convertase subtilisin/kexin type 6 [Source:ZFIN;Acc:ZDB-GENE-100908-1]
34. hapln1a ENSDARG00000089769 12334 1.741 - 0.833 - - - - 0.908 - - hyaluronan and proteoglycan link protein 1a [Source:ZFIN;Acc:ZDB-GENE-050302-175]
35. NHSL2 ENSDARG00000089066 374 1.74 - - - - - - 0.826 0.914 - NHS-like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-951]
36. BX511021.1 ENSDARG00000073936 647 1.732 - 0.769 - - - - - 0.963 - ferritin, middle subunit-like [Source:NCBI gene;Acc:100006428]
37. rprd2a ENSDARG00000058089 743 1.73 - - - - - 0.945 - 0.785 - regulation of nuclear pre-mRNA domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-030131-6641]
38. BX294434.1 ENSDARG00000061272 6493 1.728 - 0.804 - - - - 0.924 - - solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
39. PRSS23 ENSDARG00000055786 564 1.721 - - - 0.756 - 0.965 - - - serine protease 23 [Source:ZFIN;Acc:ZDB-GENE-030131-9149]
40. YRDC ENSDARG00000041428 221 1.715 - 0.846 - - - - 0.869 - - yrdC N(6)-threonylcarbamoyltransferase domain containing [Source:ZFIN;Acc:ZDB-GENE-070410-65]
41. dchs1b ENSDARG00000079850 831 1.713 - 0.828 - - - 0.885 - - - dachsous cadherin-related 1b [Source:ZFIN;Acc:ZDB-GENE-050208-41]
42. fam173b ENSDARG00000033451 513 1.712 - - - - - - 0.806 0.906 - family with sequence similarity 173, member B [Source:ZFIN;Acc:ZDB-GENE-041114-90]
43. cacng1 cacng1 3118 1.711 - 0.826 - - - - 0.885 - -
44. tnw 16679 1.707 - 0.788 - - - - 0.919 - - tenascin W, transcript variant X2
45. tmem101 ENSDARG00000114508 494 1.703 - - - 0.752 - 0.951 - - - transmembrane protein 101 [Source:ZFIN;Acc:ZDB-GENE-121214-289]
46. rab35 rab35 1287 1.7 - - - - - 0.871 - 0.829 -
47. sms ENSDARG00000008155 1192 1.696 - 0.845 - - - - 0.851 - - spermine synthase [Source:ZFIN;Acc:ZDB-GENE-040625-150]
48. rp42-pen rp42-pen 3395 1.696 - 0.816 - - - - 0.880 - -
49. mybphb ENSDARG00000003081 5208 1.693 - 0.811 - - - - 0.882 - - myosin binding protein Hb [Source:ZFIN;Acc:ZDB-GENE-030131-9794]
50. prkag3b ENSDARG00000000369 1945 1.691 - - - - - - 0.727 0.964 - protein kinase, AMP-activated, gamma 3b non-catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-060421-6938]
51. si:dkey-181m9.5 si:dkey-181m9.5 1079 1.69 - - - - - 0.791 0.899 - -
52. sh3rf1 ENSDARG00000070470 1463 1.688 - 0.781 - - - 0.907 - - - SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]
53. FP103059.1 FP103059.1 750 1.687 - - - - - 0.940 - 0.747 -
54. CU633479.5 ENSDARG00000114818 1815 1.685 - 0.748 - - - - 0.937 - -
55. ryr1b ENSDARG00000023797 5693 1.684 - 0.780 - - - - 0.904 - - ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
56. CCK CCK 1826 1.684 - - - - - 0.897 0.787 - -
57. MYOM3 2720 1.682 - 0.794 - - - - 0.888 - - myomesin 3, transcript variant X2
58. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.681 - 0.834 - - - - 0.847 - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
59. nmrk2 ENSDARG00000067848 10293 1.68 - 0.775 - - - - 0.905 - - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
60. si:ch211-105d18.6 si:ch211-105d18.6 59 1.68 0.724 - - - - 0.956 - - -
61. ck2b ck2b 781 1.679 - - - - - 0.943 0.736 - -
62. usp4 ENSDARG00000014770 1684 1.679 - - - - - - 0.725 0.954 - ubiquitin specific peptidase 4 (proto-oncogene) [Source:ZFIN;Acc:ZDB-GENE-041008-187]
63. cox10 ENSDARG00000034309, ENSDARG00000113352 2709 1.676 - 0.817 - - - - 0.859 - - cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 [Source:ZFIN;Acc:ZDB-GENE-041111-239]
64. kcnj13 ENSDARG00000043443 700 1.674 - - - - - 0.819 - 0.855 - potassium inwardly-rectifying channel, subfamily J, member 13 [Source:ZFIN;Acc:ZDB-GENE-070129-1]
65. btbd9 ENSDARG00000068983 356 1.674 - - - - - 0.938 0.736 - - BTB (POZ) domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-040704-39]
66. ntmt1 ENSDARG00000022399 5779 1.672 - 0.804 - - - - 0.868 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
67. git2a ENSDARG00000061915 884 1.671 - 0.749 - - - - - 0.922 - G protein-coupled receptor kinase interacting ArfGAP 2a [Source:ZFIN;Acc:ZDB-GENE-060526-267]
68. clic5a ENSDARG00000075993, ENSDARG00000115073 607 1.668 0.745 - - - - - 0.923 - - chloride intracellular channel 5a [Source:ZFIN;Acc:ZDB-GENE-041114-84]
69. usp28 ENSDARG00000008880 1850 1.666 - 0.753 - - - - 0.913 - - ubiquitin specific peptidase 28 [Source:ZFIN;Acc:ZDB-GENE-041008-142]
70. MYOT ENSDARG00000076312 1791 1.665 - 0.730 - - - - 0.935 - - myotilin [Source:ZFIN;Acc:ZDB-GENE-110411-129]
71. trdn ENSDARG00000041779 4283 1.665 - 0.785 - - - - 0.880 - - triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
72. pbxip1a ENSDARG00000071015 4960 1.665 - 0.741 - - - - 0.924 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
73. syne1a ENSDARG00000009499, ENSDARG00000116204 601 1.664 - - - - - - 0.791 0.873 - spectrin repeat containing, nuclear envelope 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4172]
74. DNAJA4 ENSDARG00000051762 5657 1.663 - 0.762 - - - - 0.901 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
75. CU302436.1 ENSDARG00000114500 1619 1.663 - 0.820 - - - - 0.843 - - si:dkey-108k21.25 [Source:NCBI gene;Acc:103909883]
76. rtn2b ENSDARG00000057027 1391 1.662 - 0.734 - - - - 0.928 - - reticulon 2b [Source:ZFIN;Acc:ZDB-GENE-060331-95]
77. ryr3 ENSDARG00000071331 6795 1.661 - 0.745 - - - - 0.916 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
78. CU571169.1 ENSDARG00000100253 575 1.66 - - - - - - 0.850 0.810 -
79. hdac9b ENSDARG00000056642 1148 1.658 - 0.708 - - - - 0.950 - - histone deacetylase 9b [Source:ZFIN;Acc:ZDB-GENE-040109-7]
80. eif4eb ENSDARG00000013274, ENSDARG00000114799 1262 1.655 - - - - - 0.882 0.773 - - eukaryotic translation initiation factor 4eb [Source:ZFIN;Acc:ZDB-GENE-041121-14]
81. mybpc2b ENSDARG00000021265 9618 1.652 - 0.795 - - - - 0.857 - - myosin binding protein C, fast type b [Source:ZFIN;Acc:ZDB-GENE-050320-80]
82. zgc:195001 ENSDARG00000070484 3281 1.652 - 0.761 - - - - 0.891 - - zgc:195001 [Source:ZFIN;Acc:ZDB-GENE-081022-173]
83. prx ENSDARG00000017246 6183 1.651 - 0.741 - - - - 0.910 - - periaxin [Source:ZFIN;Acc:ZDB-GENE-030131-5790]
84. TMPO TMPO 3264 1.651 0.733 - - - - - 0.918 - -
85. SCARF2 1117 1.649 0.712 - - - - 0.937 - - - scavenger receptor class F, member 2
86. ccdc25 ENSDARG00000021753 3837 1.644 - 0.721 - - - 0.923 - - - coiled-coil domain containing 25 [Source:ZFIN;Acc:ZDB-GENE-040426-1389]
87. hhatla ENSDARG00000039051 6598 1.64 - 0.754 - - - - 0.886 - - hedgehog acyltransferase like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1865]
88. GLOD5 ENSDARG00000071871 715 1.638 - - - - - 0.829 - 0.809 - glyoxalase domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-050522-174]
89. PTPLA PTPLA 4044 1.635 - 0.751 - - - - 0.884 - -
90. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 1.634 - 0.790 - - - - 0.844 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
91. lnpa ENSDARG00000063646, ENSDARG00000115902 2373 1.633 - 0.770 - - - - 0.863 - - limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
92. RBM12B ENSDARG00000079717 541 1.633 0.716 - - - - - - 0.917 - RNA binding motif protein 12B [Source:ZFIN;Acc:ZDB-GENE-030131-6428]
93. sptb ENSDARG00000030490 7128 1.632 - 0.721 - - - - 0.911 - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
94. ahsa1 ahsa1 2012 1.63 0.799 - - - - - 0.831 - -
95. kcnn3 ENSDARG00000019753 461 1.63 0.717 - - - - - 0.913 - - potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 [Source:ZFIN;Acc:ZDB-GENE-100921-56]
96. tnnc1b ENSDARG00000037539 13945 1.63 - 0.729 - - - - 0.901 - - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
97. myoz3a ENSDARG00000067701 100 1.628 0.812 - - - - - 0.816 - - myozenin 3a [Source:ZFIN;Acc:ZDB-GENE-111012-4]
98. CABZ01003826.1 CABZ01003826.1 486 1.628 - - - - - - 0.703 0.925 -
99. srl ENSDARG00000104587 11126 1.627 - 0.744 - - - - 0.883 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
100. CABZ01080590.2 CABZ01080590.2 2038 1.627 - - - - - - 0.835 0.792 -

There are 2297 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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