Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Gene Name Gene ID Reads Annotation
pdf ENSDARG00000013950 293 peptide deformylase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-050913-42]










Genes with expression patterns similar to pdf

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. pdf ENSDARG00000013950 293 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 peptide deformylase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-050913-42]
2. smdt1 smdt1 99 1.782 0.845 0.937 - - - - - - -
3. atp5s ENSDARG00000012072 294 1.748 - 0.902 - - - - - 0.846 - ATP synthase, H+ transporting, mitochondrial F0 complex subunit s [Source:ZFIN;Acc:ZDB-GENE-040426-959]
4. sdf2 ENSDARG00000024026 805 1.701 - 0.882 - - - - 0.819 - - stromal cell-derived factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8823]
5. CYSTM1 CYSTM1 176 1.66 - 0.891 - - - - - 0.769 -
6. usp45 ENSDARG00000075013 227 1.657 - 0.939 - - - 0.718 - - - ubiquitin specific peptidase 45 [Source:ZFIN;Acc:ZDB-GENE-100211-2]
7. cacng6a ENSDARG00000036457 344 1.648 - 0.946 - - - - 0.702 - - calcium channel, voltage-dependent, gamma subunit 6a [Source:ZFIN;Acc:ZDB-GENE-060503-440]
8. rhogd ENSDARG00000030608, ENSDARG00000112157 599 1.647 - 0.913 - - - - 0.734 - - ras homolog gene family, member Gd [Source:ZFIN;Acc:ZDB-GENE-040426-1504]
9. UBASH3B UBASH3B 292 1.643 - 0.939 - - 0.704 - - - -
10. cox11 ENSDARG00000061004, ENSDARG00000115002 423 1.639 - 0.921 - - - - - 0.718 - cytochrome c oxidase assembly homolog 11 (yeast) [Source:ZFIN;Acc:ZDB-GENE-050506-82]
11. akr1a1b ENSDARG00000052030, ENSDARG00000112549 2505 1.639 - 0.918 - - - - 0.721 - - aldo-keto reductase family 1, member A1b (aldehyde reductase) [Source:ZFIN;Acc:ZDB-GENE-050417-118]
12. ubald1b ENSDARG00000020976 1162 1.633 - 0.780 - - - - - 0.853 - UBA-like domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-050522-446]
13. BX005085.1 ENSDARG00000089947 230 1.632 - 0.914 - - - - - 0.718 -
14. rmdn3 ENSDARG00000041407, ENSDARG00000116827 149 1.614 - 0.907 - 0.707 - - - - - regulator of microtubule dynamics 3 [Source:ZFIN;Acc:ZDB-GENE-041014-256]
15. arhgap29b ENSDARG00000017748 812 1.595 - - - - - - 0.811 0.784 - Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
16. FAM109B FAM109B 470 1.587 0.744 - - - - - 0.843 - -
17. CABZ01063556.1 ENSDARG00000116344 319 1.565 - - - - 0.732 - - 0.833 - L antigen family member 3 [Source:NCBI gene;Acc:100536597]
18. cln8 ENSDARG00000075525, ENSDARG00000113042 601 1.526 - - - 0.761 - 0.765 - - - CLN8, transmembrane ER and ERGIC protein [Source:ZFIN;Acc:ZDB-GENE-060906-3]
19. si:dkey-169i5.4 ENSDARG00000077862 511 1.49 - - - - - - 0.774 - 0.716 si:dkey-169i5.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8695]
20. dazap1 ENSDARG00000070846, ENSDARG00000114578 525 1.486 - - - - - - 0.740 0.746 - DAZ associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-070212-1]
21. ptgis ENSDARG00000060094, ENSDARG00000113227 82 1.482 - - - 0.715 - - 0.767 - - prostaglandin I2 (prostacyclin) synthase [Source:ZFIN;Acc:ZDB-GENE-070116-1]
22. spred2a ENSDARG00000052435 1624 1.46 - 0.747 - - - - - 0.713 - sprouty-related, EVH1 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-110830-2]
23. acot13 ENSDARG00000061728, ENSDARG00000114746 516 1.451 0.736 - - - - - - 0.715 - acyl-CoA thioesterase 13 [Source:ZFIN;Acc:ZDB-GENE-060503-437]
24. stil ENSDARG00000024904, ENSDARG00000114288, ENSDARG00000116436 324 1.447 - - - - - - 0.725 0.722 - scl/tal1 interrupting locus [Source:ZFIN;Acc:ZDB-GENE-020419-39]
25. erlin2 ENSDARG00000095968, ENSDARG00000110551 1023 1.445 - 0.734 - - - - 0.711 - - ER lipid raft associated 2 [Source:NCBI gene;Acc:100151163]
26. CT030046.1 CT030046.1 190 1.418 - - - - 0.718 - - 0.700 -
27. cox7a1 ENSDARG00000069464, ENSDARG00000112682 243 0.965 - 0.965 - - - - - - - cytochrome c oxidase subunit 7A1 [Source:ZFIN;Acc:ZDB-GENE-060929-340]
28. ZFYVE1 ENSDARG00000078652 631 0.965 - 0.965 - - - - - - - zinc finger, FYVE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-131205-1]
29. gpam ENSDARG00000074169 488 0.963 - 0.963 - - - - - - - glycerol-3-phosphate acyltransferase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-101026-1]
30. cflara ENSDARG00000055966 464 0.961 - 0.961 - - - - - - - CASP8 and FADD-like apoptosis regulator a [Source:ZFIN;Acc:ZDB-GENE-030826-3]
31. uevld ENSDARG00000009266, ENSDARG00000116754 377 0.96 - 0.960 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:ZFIN;Acc:ZDB-GENE-040801-138]
32. rab33ba ENSDARG00000052290 914 0.957 - 0.957 - - - - - - - RAB33B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-050809-122]
33. si:dkey-114b16.4 si:dkey-114b16.4 35 0.955 - 0.955 - - - - - - -
34. TM2D2 ENSDARG00000035515 561 0.953 - 0.953 - - - - - - - TM2 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040718-387]
35. aff4 ENSDARG00000001857 134 0.95 - 0.950 - - - - - - - AF4/FMR2 family, member 4 [Source:ZFIN;Acc:ZDB-GENE-100910-5]
36. dirc2 ENSDARG00000009783 484 0.949 - 0.949 - - - - - - - disrupted in renal carcinoma 2 [Source:ZFIN;Acc:ZDB-GENE-040912-167]
37. NUDT8 ENSDARG00000007722 329 0.949 - 0.949 - - - - - - - nudix (nucleoside diphosphate linked moiety X)-type motif 8 [Source:ZFIN;Acc:ZDB-GENE-061013-219]
38. snupn ENSDARG00000008395 507 0.948 - 0.948 - - - - - - - snurportin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3464]
39. RBMS1 RBMS1 258 0.948 - 0.948 - - - - - - -
40. trmt1l ENSDARG00000042057 466 0.947 - 0.947 - - - - - - - tRNA methyltransferase 1-like [Source:ZFIN;Acc:ZDB-GENE-041014-189]
41. neil3 ENSDARG00000020079, ENSDARG00000111296 397 0.947 - 0.947 - - - - - - - nei-like DNA glycosylase 3 [Source:ZFIN;Acc:ZDB-GENE-041114-18]
42. dlat ENSDARG00000015918 657 0.947 - 0.947 - - - - - - - dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) [Source:ZFIN;Acc:ZDB-GENE-030131-2921]
43. CR388047.3 ENSDARG00000117023 89 0.947 - 0.947 - - - - - - -
44. C12H10orf2 C12H10orf2 245 0.946 - 0.946 - - - - - - -
45. fam105bb fam105bb 1253 0.946 - 0.946 - - - - - - -
46. fam63b 484 0.946 - 0.946 - - - - - - - family with sequence similarity 63, member B
47. casp3b ENSDARG00000055045 54 0.944 - 0.944 - - - - - - - caspase 3, apoptosis-related cysteine peptidase b [Source:ZFIN;Acc:ZDB-GENE-070607-1]
48. zgc:109744 ENSDARG00000070800 262 0.944 - 0.944 - - - - - - - zgc:109744 [Source:ZFIN;Acc:ZDB-GENE-050809-146]
49. alg9 ENSDARG00000012840 631 0.944 - 0.944 - - - - - - - ALG9, alpha-1,2-mannosyltransferase [Source:ZFIN;Acc:ZDB-GENE-040426-1270]
50. foxn4 ENSDARG00000010591 2332 0.944 - 0.944 - - - - - - - forkhead box N4 [Source:ZFIN;Acc:ZDB-GENE-990415-277]
51. CABZ01066717.1 CABZ01066717.1 351 0.944 - 0.944 - - - - - - -
52. acad11 ENSDARG00000045411 350 0.943 - 0.943 - - - - - - - acyl-CoA dehydrogenase family, member 11 [Source:ZFIN;Acc:ZDB-GENE-040426-814]
53. si:ch1073-155h21.1 ENSDARG00000007582 137 0.942 - 0.942 - - - - - - - si:ch1073-155h21.1 [Source:ZFIN;Acc:ZDB-GENE-030131-2664]
54. si:ch211-215d8.2 ENSDARG00000093233 784 0.942 - 0.942 - - - - - - - si:ch211-215d8.2 [Source:ZFIN;Acc:ZDB-GENE-050419-248]
55. cyp2aa1 ENSDARG00000099003 297 0.941 - 0.941 - - - - - - - cytochrome P450, family 2, subfamily AA, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-070424-33]
56. ZP2 ZP2 14 0.939 - 0.939 - - - - - - -
57. si:ch211-39a7.1 ENSDARG00000037427 31 0.939 - 0.939 - - - - - - - si:ch211-39a7.1 [Source:ZFIN;Acc:ZDB-GENE-060503-606]
58. CABZ01109624.1 CABZ01109624.1 25 0.939 - 0.939 - - - - - - -
59. U3_5 U3_5 67 0.939 - 0.939 - - - - - - -
60. CT573322.1 CT573322.1 38 0.939 - 0.939 - - - - - - -
61. si:dkey-228i19.34 si:dkey-228i19.34 43 0.939 - 0.939 - - - - - - -
62. si:ch211-105d18.6 si:ch211-105d18.6 59 0.939 - 0.939 - - - - - - -
63. spock3 ENSDARG00000070266, ENSDARG00000110158 934 0.937 - 0.937 - - - - - - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
64. pgap2 ENSDARG00000044596 60 0.937 - 0.937 - - - - - - - post-GPI attachment to proteins 2 [Source:ZFIN;Acc:ZDB-GENE-050320-119]
65. ppapdc2 ppapdc2 67 0.937 - 0.937 - - - - - - -
66. MAP3K2 ENSDARG00000062884 34 0.937 - 0.937 - - - - - - - mitogen-activated protein kinase kinase kinase 2 [Source:ZFIN;Acc:ZDB-GENE-120215-96]
67. casp2 ENSDARG00000062052 559 0.937 - 0.937 - - - - - - - caspase 2, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-030825-3]
68. SLC38A9 ENSDARG00000032769 35 0.936 - 0.936 - - - - - - - solute carrier family 38, member 9 [Source:ZFIN;Acc:ZDB-GENE-061013-597]
69. RNF130 ENSDARG00000089767 559 0.936 - 0.936 - - - - - - - ring finger protein 130 [Source:ZFIN;Acc:ZDB-GENE-050522-525]
70. grk5 ENSDARG00000032801 490 0.936 - 0.936 - - - - - - - G protein-coupled receptor kinase 5 [Source:ZFIN;Acc:ZDB-GENE-091204-274]
71. kcnk13a ENSDARG00000008212 136 0.936 - 0.936 - - - - - - - potassium channel, subfamily K, member 13a [Source:ZFIN;Acc:ZDB-GENE-080219-46]
72. tmem192 ENSDARG00000037484, ENSDARG00000116740 269 0.935 - 0.935 - - - - - - - transmembrane protein 192 [Source:ZFIN;Acc:ZDB-GENE-040426-2254]
73. cd74a ENSDARG00000009087 20 0.935 - 0.935 - - - - - - - CD74 molecule, major histocompatibility complex, class II invariant chain a [Source:ZFIN;Acc:ZDB-GENE-000901-1]
74. CABZ01003826.1_1 CABZ01003826.1_1 1154 0.934 - 0.934 - - - - - - -
75. si:dkey-154p10.3 ENSDARG00000068366 153 0.934 - 0.934 - - - - - - - si:dkey-154p10.3 [Source:ZFIN;Acc:ZDB-GENE-070912-380]
76. prkra ENSDARG00000076718 606 0.934 - 0.934 - - - - - - - protein kinase, interferon-inducible double stranded RNA dependent activator [Source:ZFIN;Acc:ZDB-GENE-050309-206]
77. gemin4 ENSDARG00000041252, ENSDARG00000115829 226 0.934 - 0.934 - - - - - - - gem (nuclear organelle) associated protein 4 [Source:ZFIN;Acc:ZDB-GENE-050522-188]
78. gfi1ab ENSDARG00000044457, ENSDARG00000114140 125 0.934 - 0.934 - - - - - - - growth factor independent 1A transcription repressor b [Source:ZFIN;Acc:ZDB-GENE-040116-8]
79. CR376783.1 ENSDARG00000074235 259 0.933 - 0.933 - - - - - - - V-set domain-containing T-cell activation inhibitor 1-like [Source:NCBI gene;Acc:797620]
80. CABZ01114089.1 CABZ01114089.1 127 0.933 - 0.933 - - - - - - -
81. serpine2 ENSDARG00000029353 2274 0.933 - 0.933 - - - - - - - serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-848]
82. six2a ENSDARG00000058004, ENSDARG00000115214 414 0.933 - 0.933 - - - - - - - SIX homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-010412-1]
83. cmasb 499 0.933 - 0.933 - - - - - - - cytidine monophosphate N-acetylneuraminic acid synthetase b
84. phyhiplb ENSDARG00000070498 348 0.933 - 0.933 - - - - - - - phytanoyl-CoA 2-hydroxylase interacting protein-like b [Source:ZFIN;Acc:ZDB-GENE-040927-27]
85. sowahcb ENSDARG00000059582 178 0.932 - 0.932 - - - - - - - sosondowah ankyrin repeat domain family Cb [Source:ZFIN;Acc:ZDB-GENE-061215-96]
86. unc13d ENSDARG00000078249 91 0.932 - 0.932 - - - - - - - unc-13 homolog D (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-110411-188]
87. plce1 ENSDARG00000087921 44 0.931 - 0.931 - - - - - - - phospholipase C, epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-061212-4]
88. TEAD1 TEAD1 43 0.931 - 0.931 - - - - - - -
89. nfu1 ENSDARG00000068125 1743 0.931 - 0.931 - - - - - - - NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050417-365]
90. KCNU1 KCNU1 246 0.93 - 0.930 - - - - - - -
91. pnpla2 ENSDARG00000089390 129 0.929 - 0.929 - - - - - - - patatin-like phospholipase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120913-3]
92. si:dkeyp-13a3.10 ENSDARG00000092225 1054 0.929 - 0.929 - - - - - - - si:dkeyp-13a3.10 [Source:ZFIN;Acc:ZDB-GENE-070912-636]
93. gbx2 ENSDARG00000002933, ENSDARG00000116377 633 0.929 - 0.929 - - - - - - - gastrulation brain homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-020509-2]
94. sybl1 ENSDARG00000030775, ENSDARG00000116685 201 0.929 - 0.929 - - - - - - - synaptobrevin-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1055]
95. gga3 ENSDARG00000103667 675 0.928 - 0.928 - - - - - - - ggolgi-associated, gamma adaptin ear containing, ARF binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-041111-218]
96. btbd6a ENSDARG00000076440 748 0.928 - 0.928 - - - - - - - BTB (POZ) domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-080218-26]
97. FRRS1_1 FRRS1_1 831 0.928 - 0.928 - - - - - - -
98. BX005256.1 ENSDARG00000106112 467 0.928 - 0.928 - - - - - - - phospholipase A2 inhibitor CNF-like [Source:NCBI gene;Acc:110438015]
99. rnls ENSDARG00000012453 338 0.928 - 0.928 - - - - - - - renalase, FAD-dependent amine oxidase [Source:ZFIN;Acc:ZDB-GENE-040718-351]
100. tmem150a tmem150a 543 0.926 - 0.926 - - - - - - -

There are 927 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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