Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for pcf11

Gene Name Gene ID Reads Annotation
pcf11 ENSDARG00000044625, ENSDARG00000114082 1885 PCF11, cleavage and polyadenylation factor subunit [Source:ZFIN;Acc:ZDB-GENE-041114-175]










Genes with expression patterns similar to pcf11

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. pcf11 ENSDARG00000044625, ENSDARG00000114082 1885 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PCF11, cleavage and polyadenylation factor subunit [Source:ZFIN;Acc:ZDB-GENE-041114-175]
2. sf3a2 ENSDARG00000021107 2929 1.808 - 0.997 - - - 0.811 - - - splicing factor 3a, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040426-897]
3. ptprfa ENSDARG00000103479 1250 1.792 - 0.997 - - - 0.795 - - - protein tyrosine phosphatase, receptor type, f, a [Source:ZFIN;Acc:ZDB-GENE-020107-2]
4. ddx27 ENSDARG00000091831 1471 1.754 - 0.995 - - - 0.759 - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]
5. sumo3a ENSDARG00000028119 13447 1.73 - 0.972 - - - - - - 0.758 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
6. polr2eb ENSDARG00000026183 2174 1.71 - 0.970 - - - 0.740 - - - polymerase (RNA) II (DNA directed) polypeptide E, b [Source:ZFIN;Acc:ZDB-GENE-040801-83]
7. bre bre 1233 1.695 - - - - - 0.914 0.781 - -
8. sf3a1 ENSDARG00000041887 6702 1.643 - 0.904 - - - 0.739 - - - splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
9. timm50 ENSDARG00000031098, ENSDARG00000109900 988 1.622 - - - - - 0.838 0.784 - - translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1618]
10. rab14 ENSDARG00000074246 4084 1.606 - - - - - 0.816 0.790 - - RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
11. paf1 ENSDARG00000098432 1806 1.599 - - - - - 0.839 - 0.760 - PAF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-050506-101]
12. GRAMD4 GRAMD4 1967 1.585 - - - - - 0.844 0.741 - -
13. prpf40a ENSDARG00000058467 6565 1.576 - 0.824 - - - - - - 0.752 PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
14. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 1.513 - - - - - - 0.763 - 0.750 chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
15. CHD1 ENSDARG00000103787 1645 1.511 - - 0.747 0.764 - - - - - chromodomain helicase DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7120]
16. cflara ENSDARG00000055966 464 1.504 - - - - - 0.770 0.734 - - CASP8 and FADD-like apoptosis regulator a [Source:ZFIN;Acc:ZDB-GENE-030826-3]
17. kctd6b ENSDARG00000023703, ENSDARG00000116734 2621 1.478 - - - - - 0.758 0.720 - - potassium channel tetramerization domain containing 6b [Source:ZFIN;Acc:ZDB-GENE-040718-14]
18. g3bp1 ENSDARG00000017741 7622 1.461 - - - - - - 0.744 - 0.717 GTPase activating protein (SH3 domain) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7452]
19. u2surp ENSDARG00000061490 2814 1.46 - - 0.719 - - - - 0.741 - U2 snRNP-associated SURP domain containing [Source:ZFIN;Acc:ZDB-GENE-070912-400]
20. si:ch211-69g19.2 ENSDARG00000070656, ENSDARG00000110191, ENSDARG00000114528 2860 1.456 - - - - - 0.753 0.703 - - si:ch211-69g19.2 [Source:ZFIN;Acc:ZDB-GENE-030804-13]
21. parp1 ENSDARG00000019529 6787 1.436 - - 0.722 - - - - - 0.714 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
22. znf654 ENSDARG00000079350 978 1.419 - - 0.718 - - - 0.701 - - zinc finger protein 654 [Source:ZFIN;Acc:ZDB-GENE-030131-1423]
23. mynn ENSDARG00000007271 991 1.417 - - 0.703 - - - 0.714 - - myoneurin [Source:ZFIN;Acc:ZDB-GENE-030131-5378]
24. znf609 znf609 1049 1.416 - - - - - 0.703 - - 0.713
25. polr2l ENSDARG00000058349, ENSDARG00000113402 3300 0.999 - 0.999 - - - - - - - polymerase (RNA) II (DNA directed) polypeptide L [Source:ZFIN;Acc:ZDB-GENE-050522-181]
26. aurkb ENSDARG00000037640 4874 0.998 - 0.998 - - - - - - - aurora kinase B [Source:ZFIN;Acc:ZDB-GENE-020419-40]
27. med12 ENSDARG00000103953, ENSDARG00000109815, ENSDARG00000116469 1894 0.997 - 0.997 - - - - - - - mediator complex subunit 12 [Source:ZFIN;Acc:ZDB-GENE-060125-1]
28. ppp1caa ENSDARG00000003486, ENSDARG00000115977 5931 0.997 - 0.997 - - - - - - - protein phosphatase 1, catalytic subunit, alpha isozyme a [Source:ZFIN;Acc:ZDB-GENE-040516-3]
29. otud5a ENSDARG00000059006 2073 0.997 - 0.997 - - - - - - - OTU deubiquitinase 5a [Source:ZFIN;Acc:ZDB-GENE-030616-61]
30. mphosph6 ENSDARG00000093007 340 0.996 - 0.996 - - - - - - - M-phase phosphoprotein 6 [Source:ZFIN;Acc:ZDB-GENE-040801-137]
31. plagl2 ENSDARG00000076657 2057 0.996 - 0.996 - - - - - - - pleiomorphic adenoma gene-like 2 [Source:ZFIN;Acc:ZDB-GENE-020806-1]
32. trmt11 ENSDARG00000040033 1348 0.996 - 0.996 - - - - - - - tRNA methyltransferase 11 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-953]
33. CABZ01112358.1 CABZ01112358.1 667 0.996 - 0.996 - - - - - - -
34. pak6b ENSDARG00000052405 537 0.996 - 0.996 - - - - - - - p21 protein (Cdc42/Rac)-activated kinase 6b [Source:ZFIN;Acc:ZDB-GENE-041014-121]
35. tmtc4 ENSDARG00000020447 873 0.996 - 0.996 - - - - - - - transmembrane and tetratricopeptide repeat containing 4 [Source:ZFIN;Acc:ZDB-GENE-070912-148]
36. colgalt2 ENSDARG00000014670 1932 0.995 - 0.995 - - - - - - - collagen beta(1-O)galactosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-070222-1]
37. kat2a ENSDARG00000104734 802 0.995 - 0.995 - - - - - - - K(lysine) acetyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080403-11]
38. psmg2 ENSDARG00000035987 1938 0.995 - 0.995 - - - - - - - proteasome (prosome, macropain) assembly chaperone 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1972]
39. PWWP2A ENSDARG00000075526 2163 0.995 - 0.995 - - - - - - - PWWP domain containing 2A [Source:ZFIN;Acc:ZDB-GENE-131120-4]
40. DDX24 ENSDARG00000104708 861 0.995 - 0.995 - - - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 24 [Source:ZFIN;Acc:ZDB-GENE-100716-4]
41. ppp3cca ENSDARG00000014962, ENSDARG00000112030 1301 0.995 - 0.995 - - - - - - - protein phosphatase 3, catalytic subunit, gamma isozyme, a [Source:ZFIN;Acc:ZDB-GENE-030829-36]
42. NPR2 ENSDARG00000104393 1875 0.995 - 0.995 - - - - - - - natriuretic peptide receptor 2 [Source:ZFIN;Acc:ZDB-GENE-141030-2]
43. casc5 1487 0.995 - 0.995 - - - - - - - cancer susceptibility candidate 5, transcript variant X3
44. pmm2 ENSDARG00000037654 1783 0.995 - 0.995 - - - - - - - phosphomannomutase 2 [Source:ZFIN;Acc:ZDB-GENE-030722-6]
45. TMEM106C ENSDARG00000098105 793 0.995 - 0.995 - - - - - - - transmembrane protein 106C [Source:ZFIN;Acc:ZDB-GENE-061013-562]
46. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 0.995 - 0.995 - - - - - - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
47. dzip1 ENSDARG00000000943, ENSDARG00000113867 911 0.995 - 0.995 - - - - - - - DAZ interacting zinc finger protein 1 [Source:ZFIN;Acc:ZDB-GENE-040526-1]
48. slc25a33 ENSDARG00000039931 2794 0.995 - 0.995 - - - - - - - solute carrier family 25 (pyrimidine nucleotide carrier), member 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2183]
49. ccdc80 ENSDARG00000000002 1284 0.995 - 0.995 - - - - - - - coiled-coil domain containing 80 [Source:ZFIN;Acc:ZDB-GENE-030616-56]
50. ap1g1 ENSDARG00000102394 818 0.995 - 0.995 - - - - - - - adaptor related protein complex 1 subunit gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3187]
51. mgat1b ENSDARG00000036065 996 0.995 - 0.995 - - - - - - - mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase b [Source:ZFIN;Acc:ZDB-GENE-061103-589]
52. NRD1 NRD1 3486 0.995 - 0.995 - - - - - - -
53. notch1b ENSDARG00000052094 7874 0.994 - 0.994 - - - - - - - notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
54. serinc5 ENSDARG00000008153 2863 0.994 - 0.994 - - - - - - - serine incorporator 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2918]
55. vcp ENSDARG00000020008, ENSDARG00000116074 2284 0.994 - 0.994 - - - - - - - valosin containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-5408]
56. irf6 ENSDARG00000101986 1438 0.994 - 0.994 - - - - - - - interferon regulatory factor 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1137]
57. SMAD4 SMAD4 3233 0.994 - 0.994 - - - - - - -
58. slc30a7 ENSDARG00000019998, ENSDARG00000112372 2967 0.994 - 0.994 - - - - - - - solute carrier family 30 (zinc transporter), member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-5650]
59. nr4a1 ENSDARG00000000796, ENSDARG00000109473 1072 0.994 - 0.994 - - - - - - - nuclear receptor subfamily 4, group A, member 1 [Source:ZFIN;Acc:ZDB-GENE-040704-11]
60. CABZ01074130.1 ENSDARG00000105274 26501 0.994 - 0.994 - - - - - - -
61. fgfr3 ENSDARG00000004782, ENSDARG00000114756 1791 0.993 - 0.993 - - - - - - - fibroblast growth factor receptor 3 [Source:ZFIN;Acc:ZDB-GENE-000816-1]
62. si:ch73-265d7.2 ENSDARG00000116713 2142 0.993 - 0.993 - - - - - - - si:ch73-265d7.2 [Source:ZFIN;Acc:ZDB-GENE-100922-146]
63. klhl40b ENSDARG00000019125 3633 0.993 - 0.993 - - - - - - - kelch-like family member 40b [Source:ZFIN;Acc:ZDB-GENE-060227-1]
64. r3hdm1 ENSDARG00000101458 5241 0.993 - 0.993 - - - - - - - R3H domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7119]
65. pknox1.1 ENSDARG00000018765 2149 0.993 - 0.993 - - - - - - - pbx/knotted 1 homeobox 1.1 [Source:ZFIN;Acc:ZDB-GENE-020122-5]
66. swi5 ENSDARG00000078492 1299 0.993 - 0.993 - - - - - - - SWI5 homologous recombination repair protein [Source:ZFIN;Acc:ZDB-GENE-091204-368]
67. rabggtb ENSDARG00000068587 1935 0.993 - 0.993 - - - - - - - Rab geranylgeranyltransferase subunit beta [Source:ZFIN;Acc:ZDB-GENE-040426-2116]
68. gnsb ENSDARG00000098296 1075 0.992 - 0.992 - - - - - - - glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID), b [Source:ZFIN;Acc:ZDB-GENE-030131-5846]
69. mcm2 ENSDARG00000102798 8148 0.992 - 0.992 - - - - - - - minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
70. BX324201.1 BX324201.1 3302 0.992 - 0.992 - - - - - - -
71. aldh9a1b ENSDARG00000037061 2638 0.991 - 0.991 - - - - - - - aldehyde dehydrogenase 9 family, member A1b [Source:ZFIN;Acc:ZDB-GENE-040120-5]
72. klc2 3058 0.991 - 0.991 - - - - - - - kinesin light chain 2
73. erbb2 ENSDARG00000026294, ENSDARG00000112475 2704 0.991 - 0.991 - - - - - - - erb-b2 receptor tyrosine kinase 2 [Source:ZFIN;Acc:ZDB-GENE-031118-121]
74. wu:fc34e06 1793 0.991 - 0.991 - - - - - - - wu:fc34e06, transcript variant X10
75. sdcbp2 ENSDARG00000012513, ENSDARG00000113289, ENSDARG00000115159 6359 0.991 - 0.991 - - - - - - - syndecan binding protein (syntenin) 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3727]
76. hadhab ENSDARG00000060594 3664 0.991 - 0.991 - - - - - - - hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha b [Source:ZFIN;Acc:ZDB-GENE-041111-204]
77. pbx2 ENSDARG00000019717 6892 0.99 - 0.990 - - - - - - - pre-B-cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-000405-5]
78. entpd1 ENSDARG00000045066 2930 0.99 - 0.990 - - - - - - - ectonucleoside triphosphate diphosphohydrolase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-58]
79. tubb5 ENSDARG00000037997 18691 0.99 - 0.990 - - - - - - - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
80. smyd2a ENSDARG00000055151 2505 0.99 - 0.990 - - - - - - - SET and MYND domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-050320-126]
81. tuba8l3 ENSDARG00000070155 7525 0.988 - 0.988 - - - - - - - tubulin, alpha 8 like 3 [Source:ZFIN;Acc:ZDB-GENE-040801-77]
82. ndufa8 ENSDARG00000058041, ENSDARG00000111900 5493 0.988 - 0.988 - - - - - - - NADH:ubiquinone oxidoreductase subunit A8 [Source:ZFIN;Acc:ZDB-GENE-040426-1688]
83. pip5k2 pip5k2 5743 0.987 - 0.987 - - - - - - -
84. mcrs1 ENSDARG00000020840 3232 0.987 - 0.987 - - - - - - - microspherule protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2434]
85. ebag9 ENSDARG00000040021 2217 0.986 - 0.986 - - - - - - - estrogen receptor binding site associated, antigen, 9 [Source:ZFIN;Acc:ZDB-GENE-040426-1093]
86. ddx19 ENSDARG00000005699 4602 0.986 - 0.986 - - - - - - - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
87. nutf2l ENSDARG00000014499 3927 0.986 - 0.986 - - - - - - - nuclear transport factor 2, like [Source:ZFIN;Acc:ZDB-GENE-020416-1]
88. si:ch211-114l13.11 si:ch211-114l13.11 4727 0.983 - 0.983 - - - - - - -
89. nap1l4a ENSDARG00000070560, ENSDARG00000113907 4244 0.981 - 0.981 - - - - - - - nucleosome assembly protein 1-like 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9099]
90. khsrp ENSDARG00000026489 15738 0.98 - 0.980 - - - - - - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
91. chchd2 ENSDARG00000059304, ENSDARG00000112202 7438 0.977 - 0.977 - - - - - - - coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1737]
92. chchd10 ENSDARG00000010717, ENSDARG00000111874 4782 0.974 - 0.974 - - - - - - - coiled-coil-helix-coiled-coil-helix domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1753]
93. fabp7a ENSDARG00000007697 5211 0.969 - 0.969 - - - - - - - fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
94. lmtk2 ENSDARG00000076324 1367 0.962 - 0.962 - - - - - - - lemur tyrosine kinase 2 [Source:ZFIN;Acc:ZDB-GENE-100812-11]
95. vdac3 ENSDARG00000003695 16776 0.956 - 0.956 - - - - - - - voltage-dependent anion channel 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2380]
96. cdk1 ENSDARG00000087554, ENSDARG00000110840 8297 0.955 - 0.955 - - - - - - - cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
97. tcp1 ENSDARG00000017891 7946 0.954 - 0.954 - - - - - - - t-complex 1 [Source:ZFIN;Acc:ZDB-GENE-990714-24]
98. calm1b ENSDARG00000034187 13158 0.947 - 0.947 - - - - - - - calmodulin 1b [Source:ZFIN;Acc:ZDB-GENE-030804-2]
99. apg3l apg3l 5153 0.944 - 0.944 - - - - - - -
100. dldh ENSDARG00000008785 15202 0.94 - 0.940 - - - - - - - dihydrolipoamide dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040120-4]

There are 913 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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