Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for pabpc1a

Gene Name Gene ID Reads Annotation
pabpc1a ENSDARG00000017219 95045 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]










Genes with expression patterns similar to pabpc1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. pabpc1a ENSDARG00000017219 95045 8 1.000 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
2. hoxb4a ENSDARG00000013533 3857 1.729 - - - 0.861 - - - - 0.868 homeobox B4a [Source:ZFIN;Acc:ZDB-GENE-990415-105]
3. CNDP1 CNDP1 6456 1.669 - - - 0.859 - - 0.810 - -
4. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 50840 1.665 - - - - - - 0.723 - 0.942 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
5. slc25a22 14366 1.66 - - - - - - 0.776 - 0.884 solute carrier family 25 (mitochondrial carrier: glutamate), member 22, transcript variant X2
6. pfn2 ENSDARG00000003952 26209 1.656 - - - - - 0.754 0.902 - - profilin 2 [Source:ZFIN;Acc:ZDB-GENE-040115-4]
7. serpina1 ENSDARG00000090286 8108 1.647 - - - 0.839 - - 0.808 - - serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1421]
8. ywhabb ENSDARG00000075758 23104 1.573 - - - 0.847 - - 0.726 - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide b [Source:ZFIN;Acc:ZDB-GENE-040426-2160]
9. fahd2a ENSDARG00000103759 9581 1.573 - - - 0.840 - 0.733 - - - fumarylacetoacetate hydrolase domain containing 2A [Source:ZFIN;Acc:ZDB-GENE-040426-2499]
10. col18a1 col18a1 20555 1.537 - - - 0.825 - - 0.712 - -
11. acp5a ENSDARG00000019763, ENSDARG00000111996 7752 1.536 - - - - - 0.744 0.792 - - acid phosphatase 5a, tartrate resistant [Source:ZFIN;Acc:ZDB-GENE-040426-2864]
12. h3f3a 66671 1.489 - - - - 0.741 - - - 0.748 H3 histone, family 3A, transcript variant X1
13. dap ENSDARG00000000069, ENSDARG00000114419 13155 1.461 - - - - - 0.714 0.747 - - death-associated protein [Source:ZFIN;Acc:ZDB-GENE-000511-3]
14. cd9b ENSDARG00000016691 15573 1.461 - - - - - 0.730 0.731 - - CD9 molecule b [Source:ZFIN;Acc:ZDB-GENE-040426-2768]
15. si:dkey-33i11.4 ENSDARG00000099117 8342 1.456 - - - - - 0.703 0.753 - - si:dkey-33i11.4 [Source:ZFIN;Acc:ZDB-GENE-030131-33]
16. zgc:161979 zgc:161979 196746 1.455 - - - - - 0.713 0.742 - -
17. ssr2 ENSDARG00000005230 31940 1.454 - - - - - 0.711 0.743 - - signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]
18. UBC ENSDARG00000102632 39051 1.452 - - - 0.744 - - 0.708 - - ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
19. dao.1 ENSDARG00000035602 11969 1.44 - - - - - 0.706 0.734 - - D-amino-acid oxidase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-127]
20. mcm2 ENSDARG00000102798 8148 0.956 - - - 0.956 - - - - - minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
21. chd4b ENSDARG00000025789 14299 0.955 - - - 0.955 - - - - - chromodomain helicase DNA binding protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-4532]
22. nucks1a ENSDARG00000078473 28285 0.952 - - - - - - - - 0.952 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
23. TUBA1A ENSDARG00000001889 25294 0.942 - - - - - - - - 0.942 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
24. tceb1b 14935 0.928 - - - 0.928 - - - - - transcription elongation factor B (SIII), polypeptide 1b
25. HNRNPA2B1 HNRNPA2B1 14997 0.926 - - - - - - - - 0.926
26. prdx5 ENSDARG00000055064 27445 0.906 - - - - - - 0.906 - - peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
27. BX511086.1 BX511086.1 8308 0.893 - - - - - - - - 0.893
28. h2afy2_1 ENSDARG00000087897 9887 0.892 - - - - - - - - 0.892 H2A histone family, member Y2 [Source:ZFIN;Acc:ZDB-GENE-050913-114]
29. sptbn2 ENSDARG00000053956 8452 0.888 - - - - - - - - 0.888 spectrin, beta, non-erythrocytic 2 [Source:ZFIN;Acc:ZDB-GENE-030131-787]
30. tox ENSDARG00000032317 9126 0.883 - - - 0.883 - - - - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
31. hist2h2l ENSDARG00000068996, ENSDARG00000112150 10411 0.879 - - - - - - - - 0.879 histone 2, H2, like [Source:ZFIN;Acc:ZDB-GENE-031118-36]
32. AGO1 ENSDARG00000092644 4521 0.879 - - - 0.879 - - - - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
33. smc1al ENSDARG00000058203 8838 0.877 - - - 0.877 - - - - - structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
34. barhl2 ENSDARG00000104361, ENSDARG00000114681, ENSDARG00000115723 2000 0.877 - - - - - - - - 0.877 BarH-like homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-050913-153]
35. amd1 ENSDARG00000043856, ENSDARG00000111778 9667 0.876 - - - - - - - - 0.876 adenosylmethionine decarboxylase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-760]
36. tuba1c ENSDARG00000055216 8384 0.875 - - - 0.875 - - - - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
37. SERBP1 SERBP1 9276 0.875 - - - 0.875 - - - - -
38. hmgb1b ENSDARG00000030479 10398 0.874 - - - 0.874 - - - - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
39. matr3l1.1 ENSDARG00000000394, ENSDARG00000001162 3757 0.872 - - - - - - - - 0.872 matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
40. crygm2d3 ENSDARG00000088823 1560 0.872 - - - - - - - - 0.872 crystallin, gamma M2d3 [Source:ZFIN;Acc:ZDB-GENE-060918-2]
41. vgll4b ENSDARG00000103730 5266 0.872 - - - - - - - - 0.872 vestigial-like family member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-2445]
42. yipf4 ENSDARG00000030957, ENSDARG00000109994 4665 0.871 - - - - - - - - 0.871 Yip1 domain family, member 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2253]
43. eif3ha ENSDARG00000102452 9238 0.87 - - - - - - - - 0.870 eukaryotic translation initiation factor 3, subunit H, a [Source:ZFIN;Acc:ZDB-GENE-040808-19]
44. cul4b ENSDARG00000060510 6053 0.87 - - - 0.870 - - - - - cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
45. ccnt2b ENSDARG00000036510 3353 0.87 - - - - - - - - 0.870 cyclin T2b [Source:ZFIN;Acc:ZDB-GENE-030131-183]
46. notch2 ENSDARG00000043130 4430 0.87 - - - - - - - - 0.870 notch 2 [Source:ZFIN;Acc:ZDB-GENE-000329-4]
47. rerea ENSDARG00000077353 4162 0.87 - - - 0.870 - - - - - arginine-glutamic acid dipeptide (RE) repeats a [Source:ZFIN;Acc:ZDB-GENE-060718-1]
48. prpf40a ENSDARG00000058467 6565 0.869 - - - 0.869 - - - - - PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
49. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 0.869 - - - 0.869 - - - - - pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
50. aurka ENSDARG00000012485 3304 0.869 - - - - - - - - 0.869 aurora kinase A [Source:ZFIN;Acc:ZDB-GENE-040801-161]
51. nhp2 ENSDARG00000069422 9925 0.869 - - - - - - - - 0.869 NHP2 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-533]
52. add3a ENSDARG00000040874 4938 0.869 - - - - - - - - 0.869 adducin 3 (gamma) a [Source:ZFIN;Acc:ZDB-GENE-030131-2721]
53. rab2a ENSDARG00000020261 24540 0.868 - - - - - - - - 0.868 RAB2A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-011212-2]
54. ywhae1 ENSDARG00000006399, ENSDARG00000109636, ENSDARG00000109789 13364 0.868 - - - 0.868 - - - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-779]
55. rbm4.3 ENSDARG00000022129 28571 0.868 - - - 0.868 - - - - - RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
56. EIF1B ENSDARG00000029445 5034 0.867 - - - 0.867 - - - - - eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
57. cnot1 ENSDARG00000004174, ENSDARG00000109411 4625 0.866 - - - 0.866 - - - - - CCR4-NOT transcription complex, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040915-1]
58. bhlhe22 ENSDARG00000058039 1673 0.865 - - - - - - - - 0.865 basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
59. nol11 ENSDARG00000026767 2528 0.864 - - - - - - - - 0.864 nucleolar protein 11 [Source:ZFIN;Acc:ZDB-GENE-030131-419]
60. AMBRA1_1 AMBRA1_1 2179 0.864 - - - 0.864 - - - - -
61. ppp6c ENSDARG00000002949 2948 0.864 - - - 0.864 - - - - - protein phosphatase 6, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-949]
62. EPHB3 2215 0.863 - - - - - - - - 0.863 EPH receptor B3
63. zgc:100919 zgc:100919 7746 0.863 - - - 0.863 - - - - -
64. C3H19orf43 C3H19orf43 2961 0.863 - - - 0.863 - - - - -
65. ube2d1a ENSDARG00000029107, ENSDARG00000111656 3658 0.863 - - - 0.863 - - - - - ubiquitin-conjugating enzyme E2D 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1609]
66. CU929431.1 CU929431.1 2234 0.863 - - - 0.863 - - - - -
67. ass1 8099 0.862 - - - - - - 0.862 - - argininosuccinate synthase 1
68. lig3 ENSDARG00000052553 2665 0.862 - - - - - - - - 0.862 ligase III, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-030131-8453]
69. alas1 ENSDARG00000021059 4892 0.862 - - - 0.862 - - - - - aminolevulinate, delta-, synthase 1 [Source:ZFIN;Acc:ZDB-GENE-001229-2]
70. cox10 ENSDARG00000034309, ENSDARG00000113352 2709 0.862 - - - - - - - - 0.862 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 [Source:ZFIN;Acc:ZDB-GENE-041111-239]
71. acsl3b ENSDARG00000014674 3748 0.862 - - - 0.862 - - - - - acyl-CoA synthetase long chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
72. abca12 ENSDARG00000074749 2712 0.861 - - - - - - - - 0.861 ATP-binding cassette, sub-family A (ABC1), member 12 [Source:ZFIN;Acc:ZDB-GENE-030131-9790]
73. zgc:56493 ENSDARG00000031435 33407 0.861 - - - 0.861 - - - - - zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
74. ranbp10 ENSDARG00000062138, ENSDARG00000110661 2067 0.861 - - - - - - - - 0.861 RAN binding protein 10 [Source:ZFIN;Acc:ZDB-GENE-070705-86]
75. camsap2 camsap2 1448 0.861 - - - 0.861 - - - - -
76. nkrf ENSDARG00000100536 1873 0.861 - - - 0.861 - - - - - NFKB repressing factor [Source:ZFIN;Acc:ZDB-GENE-030616-73]
77. eno2 ENSDARG00000014287 2162 0.861 - - - - - - - - 0.861 enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
78. CR388095.3 CR388095.3 2548 0.861 - - - 0.861 - - - - -
79. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 61276 0.86 - - - - - - - - 0.860 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
80. fermt2 ENSDARG00000020242 9351 0.86 - - - 0.860 - - - - - fermitin family member 2 [Source:ZFIN;Acc:ZDB-GENE-050506-132]
81. slc25a47a ENSDARG00000059923 1285 0.86 - - - - - - - - 0.860 solute carrier family 25, member 47a [Source:ZFIN;Acc:ZDB-GENE-060616-266]
82. slc15a4 ENSDARG00000102612 1096 0.859 - - - 0.859 - - - - - solute carrier family 15 (oligopeptide transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1047]
83. vps51 ENSDARG00000062016, ENSDARG00000110076 1646 0.859 - - - - - - - - 0.859 vacuolar protein sorting 51 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-6008]
84. camkmt ENSDARG00000095224 1204 0.859 - - - 0.859 - - - - - calmodulin-lysine N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-090313-49]
85. tchp ENSDARG00000035605 1695 0.859 - - - 0.859 - - - - - trichoplein, keratin filament binding [Source:ZFIN;Acc:ZDB-GENE-060421-3368]
86. SLC9A1 ENSDARG00000067784 1494 0.859 - - - - - - - - 0.859 solute carrier family 9 member A1 [Source:HGNC Symbol;Acc:HGNC:11071]
87. l3mbtl2 ENSDARG00000056079, ENSDARG00000116037 1645 0.859 - - - - - - - - 0.859 l(3)mbt-like 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-8713]
88. FAM35A FAM35A 1091 0.859 - - - 0.859 - - - - -
89. herpud2 ENSDARG00000021033 1800 0.859 - - - 0.859 - - - - - HERPUD family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-868]
90. mpi ENSDARG00000030786 3052 0.859 - - - 0.859 - - - - - mannose phosphate isomerase [Source:ZFIN;Acc:ZDB-GENE-050904-6]
91. txndc5 ENSDARG00000009342 5387 0.859 - - - 0.859 - - - - - thioredoxin domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1951]
92. bin2b ENSDARG00000010255 2649 0.859 - - - - - - - - 0.859 bridging integrator 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5598]
93. pycr1 pycr1 1258 0.858 - - - 0.858 - - - - -
94. MYO5C ENSDARG00000104235 1285 0.858 - - - - - - - - 0.858 myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
95. dre-mir-26a-2 ENSDARG00000086601 1267 0.858 - - - 0.858 - - - - - dre-mir-26a-2 [Source:miRBase;Acc:MI0001925]
96. uqcrc2a ENSDARG00000014794 3949 0.858 - - - - - - - - 0.858 ubiquinol-cytochrome c reductase core protein 2a [Source:ZFIN;Acc:ZDB-GENE-040718-405]
97. gap43 ENSDARG00000099744 4114 0.858 - - - 0.858 - - - - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
98. atoh8 ENSDARG00000037555, ENSDARG00000110248 2059 0.858 - - - 0.858 - - - - - atonal bHLH transcription factor 8 [Source:ZFIN;Acc:ZDB-GENE-061215-7]
99. mertk mertk 1232 0.858 - - - 0.858 - - - - -
100. nacad ENSDARG00000012347 1268 0.858 - - - - - - - - 0.858 NAC alpha domain containing [Source:ZFIN;Acc:ZDB-GENE-091020-7]

There are 145 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA