Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for opn1sw1

Gene Name Gene ID Reads Annotation
opn1sw1 ENSDARG00000045677 1 opsin 1 (cone pigments), short-wave-sensitive 1 [Source:ZFIN;Acc:ZDB-GENE-991109-25]










Genes with expression patterns similar to opn1sw1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. opn1sw1 ENSDARG00000045677 1 2 - - - - 1.000 - - - 1.000 opsin 1 (cone pigments), short-wave-sensitive 1 [Source:ZFIN;Acc:ZDB-GENE-991109-25]
2. zgc:110434_1 30 1.592 - - - - 0.772 - - - 0.820 zgc:110434
3. ENSDARG00000029117 ENSDARG00000029117 80 1.488 - - - - 0.774 - - - 0.714
4. si:dkey-254e13.12 si:dkey-254e13.12 1 1 - - - - 1.000 - - - -
5. scg5_1 ENSDARG00000032126, ENSDARG00000077045 6 1 - - - - 1.000 - - - - secretogranin V [Source:ZFIN;Acc:ZDB-GENE-040426-1687]
6. gcsha ENSDARG00000091655, ENSDARG00000111225 1 1 - - - - 1.000 - - - - glycine cleavage system protein H (aminomethyl carrier), a [Source:ZFIN;Acc:ZDB-GENE-050320-18]
7. si:ch211-93g21.1 ENSDARG00000093602 5 1 - - - - 1.000 - - - - si:ch211-93g21.1 [Source:ZFIN;Acc:ZDB-GENE-060503-703]
8. calhm3 ENSDARG00000079602 4 1 - - - - 1.000 - - - - calcium homeostasis modulator 3 [Source:ZFIN;Acc:ZDB-GENE-081107-70]
9. or102-3 ENSDARG00000074966 0 1 - - - - 1.000 - - - - odorant receptor, family C, subfamily 102, member 3 [Source:ZFIN;Acc:ZDB-GENE-010308-3]
10. suv39h1a ENSDARG00000026799 18 1 - - - - 1.000 - - - - suppressor of variegation 3-9 homolog 1a [Source:ZFIN;Acc:ZDB-GENE-040801-111]
11. zgc:153704 ENSDARG00000045979 11 1 - - - - 1.000 - - - - zgc:153704 [Source:ZFIN;Acc:ZDB-GENE-060929-1114]
12. or115-8 ENSDARG00000092406 1 1 - - - - 1.000 - - - - odorant receptor, family F, subfamily 115, member 8 [Source:ZFIN;Acc:ZDB-GENE-070806-10]
13. zgc:173603 zgc:173603 2 1 - - - - 1.000 - - - -
14. LRCH4 ENSDARG00000068258 22 1 - - - - 1.000 - - - - leucine-rich repeats and calponin homology (CH) domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060503-749]
15. dgcr8 ENSDARG00000035564, ENSDARG00000113898 39 1 - - - - 1.000 - - - - DGCR8 microprocessor complex subunit [Source:ZFIN;Acc:ZDB-GENE-030131-3421]
16. or137-1 ENSDARG00000105789 2 1 - - - - 1.000 - - - - odorant receptor, family H, subfamily 137, member 1 [Source:ZFIN;Acc:ZDB-GENE-070806-30]
17. tmprss3a ENSDARG00000053315 5 1 - - - - 1.000 - - - - transmembrane serine protease 3a [Source:ZFIN;Acc:ZDB-GENE-070912-70]
18. glsa ENSDARG00000062812 1 1 - - - - 1.000 - - - - glutaminase a [Source:ZFIN;Acc:ZDB-GENE-050204-3]
19. CR392006.2 CR392006.2 0 1 - - - - 1.000 - - - -
20. gig2e ENSDARG00000075757, ENSDARG00000110217 2 1 - - - - 1.000 - - - - grass carp reovirus (GCRV)-induced gene 2e [Source:ZFIN;Acc:ZDB-GENE-130517-2]
21. si:dkey-57b6.4 si:dkey-57b6.4 3 1 - - - - 1.000 - - - -
22. CLTCL1_2 CLTCL1_2 1 1 - - - - 1.000 - - - -
23. DDO_1 DDO_1 5 1 - - - - 1.000 - - - -
24. si:ch211-76l23.4 ENSDARG00000096242 202 1 - - - - 1.000 - - - - si:ch211-76l23.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8310]
25. BX088525.2 ENSDARG00000117222 11 1 - - - - 1.000 - - - -
26. si:dkey-29p23.2 ENSDARG00000113192 2 1 - - - - 1.000 - - - - si:dkey-29p23.2 [Source:ZFIN;Acc:ZDB-GENE-110914-51]
27. CABZ01072853.1 CABZ01072853.1 35 1 - - - - 1.000 - - - -
28. pnocb ENSDARG00000024189 18 1 - - - - 1.000 - - - - prepronociceptin b [Source:ZFIN;Acc:ZDB-GENE-040114-1]
29. VWA5A_1 VWA5A_1 6 1 - - - - 1.000 - - - -
30. SEMA4D ENSDARG00000067801 5 1 - - - - 1.000 - - - - semaphorin 4D [Source:HGNC Symbol;Acc:HGNC:10732]
31. TMEM150B TMEM150B 1 1 - - - - 1.000 - - - -
32. si:ch211-79g12.1 ENSDARG00000116692 2 1 - - - - 1.000 - - - - si:ch211-79g12.1 [Source:ZFIN;Acc:ZDB-GENE-110914-69]
33. si:ch211-128b10.4 si:ch211-128b10.4 3 1 - - - - 1.000 - - - -
34. DENND1C DENND1C 1 1 - - - - 1.000 - - - -
35. si:dkey-25i10.1 ENSDARG00000098536 0 1 - - - - 1.000 - - - - si:dkey-25i10.1 [Source:ZFIN;Acc:ZDB-GENE-110913-114]
36. mamdc2a ENSDARG00000098345 21 1 - - - - 1.000 - - - - MAM domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-060526-16]
37. zgc:103519 zgc:103519 3 1 - - - - 1.000 - - - -
38. nitr7b ENSDARG00000067977 0 1 - - - - 1.000 - - - - novel immune-type receptor 7b [Source:ZFIN;Acc:ZDB-GENE-041001-8]
39. si:dkey-13k17.1 si:dkey-13k17.1 2 1 - - - - 1.000 - - - -
40. clrn1 ENSDARG00000102890 5 1 - - - - - - - - 1.000 clarin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-420]
41. si:dkey-9i5.4 si:dkey-9i5.4 14 1 - - - - 1.000 - - - -
42. rpz3 ENSDARG00000069728 11 1 - - - - 1.000 - - - - rapunzel 3 [Source:ZFIN;Acc:ZDB-GENE-030131-4784]
43. si:ch73-138e16.4 ENSDARG00000102363 0 1 - - - - 1.000 - - - - si:ch73-138e16.4 [Source:ZFIN;Acc:ZDB-GENE-070705-203]
44. ddx46 ENSDARG00000099458 24 1 - - - - 1.000 - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Source:ZFIN;Acc:ZDB-GENE-030131-667]
45. pcdh15b ENSDARG00000008127 2 1 - - - - 1.000 - - - - protocadherin-related 15b [Source:ZFIN;Acc:ZDB-GENE-050214-1]
46. si:ch211-128b10.5 si:ch211-128b10.5 3 1 - - - - 1.000 - - - -
47. Metazoa_SRP_30 Metazoa_SRP_30 10 1 - - - - 1.000 - - - -
48. CLCN2 CLCN2 8 1 - - - - 1.000 - - - -
49. PLB1 PLB1 20 1 - - - - 1.000 - - - -
50. CABZ01031627.2 CABZ01031627.2 1 1 - - - - 1.000 - - - -
51. CABZ01069745.1 CABZ01069745.1 0 1 - - - - 1.000 - - - -
52. gatsl3 7 1 - - - - 1.000 - - - - GATS protein-like 3
53. CR753866.2 CR753866.2 6 1 - - - - 1.000 - - - -
54. ENSDARG00000091583 ENSDARG00000091583 0 1 - - - - 1.000 - - - -
55. greb1l_1 ENSDARG00000039196 8 1 - - - - 1.000 - - - - GREB1 like retinoic acid receptor coactivator [Source:ZFIN;Acc:ZDB-GENE-030131-4022]
56. USP2 USP2 157 1 - - - - 1.000 - - - -
57. AL935141.5 AL935141.5 24 1 - - - - 1.000 - - - -
58. si:ch211-176g6.2 ENSDARG00000079791 4 1 - - - - - - - - 1.000 si:ch211-176g6.2 [Source:ZFIN;Acc:ZDB-GENE-121214-224]
59. si:dkey-220o5.5 ENSDARG00000099211 0 1 - - - - 1.000 - - - - si:dkey-220o5.5 [Source:ZFIN;Acc:ZDB-GENE-081104-376]
60. si:ch211-207l22.1 si:ch211-207l22.1 1 1 - - - - 1.000 - - - -
61. GRXCR2 0 1 - - - - 1.000 - - - - glutaredoxin and cysteine rich domain containing 2
62. si:dkey-79c1.1 ENSDARG00000093179 11 1 - - - - 1.000 - - - - si:dkey-79c1.1 [Source:ZFIN;Acc:ZDB-GENE-060531-153]
63. agbl5 ENSDARG00000045900 2 1 - - - - 1.000 - - - - ATP/GTP binding protein-like 5 [Source:ZFIN;Acc:ZDB-GENE-040822-29]
64. GPX2 ENSDARG00000089149 10 1 - - - - - - - - 1.000 glutathione peroxidase 2 [Source:NCBI gene;Acc:100334384]
65. si:dkey-51d8.2 si:dkey-51d8.2 0 1 - - - - 1.000 - - - -
66. si:ch211-15p9.2 ENSDARG00000062241 1 1 - - - - 1.000 - - - - si:ch211-15p9.2 [Source:ZFIN;Acc:ZDB-GENE-060503-577]
67. CABZ01076758.1 ENSDARG00000100810 3 1 - - - - 1.000 - - - -
68. si:ch1073-15f19.2 ENSDARG00000095640 4 1 - - - - 1.000 - - - - si:ch1073-15f19.2 [Source:ZFIN;Acc:ZDB-GENE-091204-84]
69. CABZ01040931.1 ENSDARG00000099474 0 1 - - - - 1.000 - - - -
70. fgf22 ENSDARG00000076510, ENSDARG00000114053, ENSDARG00000115407 3 1 - - - - 1.000 - - - - fibroblast growth factor 22 [Source:ZFIN;Acc:ZDB-GENE-050208-380]
71. acsl6 0 1 - - - - 1.000 - - - - acyl-CoA synthetase long-chain family member 6
72. CU693477.1 CU693477.1 7 1 - - - - 1.000 - - - -
73. si:dkey-56e5.2 si:dkey-56e5.2 14 1 - - - - 1.000 - - - -
74. LRRC69 LRRC69 1 1 - - - - 1.000 - - - -
75. bmpr1ab ENSDARG00000105045 2 1 - - - - 1.000 - - - - bone morphogenetic protein receptor, type IAb [Source:ZFIN;Acc:ZDB-GENE-040912-150]
76. RNaseP_nuc_2 RNaseP_nuc_2 0 1 - - - - 1.000 - - - -
77. BX000477.1 BX000477.1 1 1 - - - - 1.000 - - - -
78. CABZ01086835.1 ENSDARG00000110902 0 1 - - - - 1.000 - - - - synaptotagmin-4-like [Source:NCBI gene;Acc:101884989]
79. CABZ01076817.1 CABZ01076817.1 4 1 - - - - 1.000 - - - -
80. U1_31 U1_31 0 1 - - - - 1.000 - - - -
81. osmr ENSDARG00000100738 2 1 - - - - - - - - 1.000 oncostatin M receptor [Source:ZFIN;Acc:ZDB-GENE-060526-48]
82. sult1st2 ENSDARG00000041540 1 1 - - - - 1.000 - - - - sulfotransferase family 1, cytosolic sulfotransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030804-27]
83. BX469930.1 ENSDARG00000092358 3 1 - - - - 1.000 - - - -
84. si:dkey-179o14.4 si:dkey-179o14.4 2 1 - - - - 1.000 - - - -
85. si:ch211-207l22.2 si:ch211-207l22.2 1 1 - - - - 1.000 - - - -
86. fam189a1 ENSDARG00000053380 11 1 - - - - 1.000 - - - - family with sequence similarity 189, member A1 [Source:ZFIN;Acc:ZDB-GENE-040718-129]
87. U1_34 U1_34 0 1 - - - - 1.000 - - - -
88. KBTBD11 ENSDARG00000104958 8 1 - - - - 1.000 - - - - kelch repeat and BTB (POZ) domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-130530-678]
89. si:ch211-272h9.5 ENSDARG00000092167 8 1 - - - - 1.000 - - - - si:ch211-272h9.5 [Source:ZFIN;Acc:ZDB-GENE-070705-167]
90. ROCK2_2 ROCK2_2 0 1 - - - - 1.000 - - - -
91. espnla ENSDARG00000078211 8 1 - - - - 1.000 - - - - espin like a [Source:ZFIN;Acc:ZDB-GENE-131121-3]
92. mir430c-2 2 1 - - - - 1.000 - - - - microRNA 430c-2
93. CABZ01074298.1 ENSDARG00000087767 6 1 - - - - 1.000 - - - - uncharacterized LOC100334396 [Source:NCBI gene;Acc:100334396]
94. si:ch211-113a14.10_1 si:ch211-113a14.10_1 59 1 - - - - 1.000 - - - -
95. si:dkey-34e4.1 ENSDARG00000022085 5 1 - - - - 1.000 - - - - si:dkey-34e4.1 [Source:ZFIN;Acc:ZDB-GENE-070705-456]
96. PEG3_8 PEG3_8 1 1 - - - - 1.000 - - - -
97. ZNF70_13 ZNF70_13 1 1 - - - - 1.000 - - - -
98. ENDOD1_4 ENDOD1_4 2 1 - - - - 1.000 - - - -
99. ADAD1 ENSDARG00000089181 9 1 - - - - 1.000 - - - - adenosine deaminase domain containing 1 (testis-specific) [Source:ZFIN;Acc:ZDB-GENE-030131-6285]
100. si:ch73-211l2.3 ENSDARG00000075932 4 1 - - - - 1.000 - - - - si:ch73-211l2.3 [Source:ZFIN;Acc:ZDB-GENE-081105-52]

There are 156 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA