Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for nxf1

Gene Name Gene ID Reads Annotation
nxf1 ENSDARG00000055076 3251 nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]










Genes with expression patterns similar to nxf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nxf1 ENSDARG00000055076 3251 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
2. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 3.369 - - 0.876 - 0.958 - 0.818 - 0.717 ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
3. snrpd3l ENSDARG00000076283 7655 3.299 - 0.920 - - 0.827 - 0.761 - 0.791 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
4. calm1a ENSDARG00000021811 4791 3.269 - 0.989 - - 0.855 0.715 0.710 - - calmodulin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8308]
5. coe2 coe2 1633 3.127 - - 0.949 - - 0.709 0.752 - 0.717
6. naa15a ENSDARG00000003213 5889 2.75 0.990 - - - 0.957 - 0.803 - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-2392]
7. sf3b2 ENSDARG00000018049 4675 2.747 0.877 - 0.939 - 0.931 - - - - splicing factor 3b, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070928-1]
8. nol9 ENSDARG00000077751 2471 2.662 - - 0.956 - 0.953 - 0.753 - - nucleolar protein 9 [Source:ZFIN;Acc:ZDB-GENE-070629-1]
9. supt6h ENSDARG00000006524 3221 2.661 0.994 - - - 0.957 - 0.710 - - SPT6 homolog, histone chaperone [Source:ZFIN;Acc:ZDB-GENE-030131-7949]
10. gtf2a1 ENSDARG00000011000 2026 2.66 0.998 - 0.878 - - 0.784 - - - general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
11. timm17a ENSDARG00000029510, ENSDARG00000115486 4295 2.648 - 0.993 - - 0.895 - 0.760 - - translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:ZFIN;Acc:ZDB-GENE-031030-6]
12. pno1 ENSDARG00000008502 4547 2.634 0.987 - - - 0.900 - 0.747 - - partner of NOB1 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1419]
13. myo1b ENSDARG00000024694 1761 2.627 - - 0.954 - - 0.855 0.818 - - myosin IB [Source:ZFIN;Acc:ZDB-GENE-030131-695]
14. ppapdc1b ppapdc1b 2866 2.613 0.997 - 0.889 0.727 - - - - -
15. srpk1b ENSDARG00000031560 2079 2.612 - - - - 0.965 0.821 0.826 - - SRSF protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2292]
16. ubtf ENSDARG00000035066 4070 2.561 - - 0.945 - - 0.863 - - 0.753 upstream binding transcription factor [Source:ZFIN;Acc:ZDB-GENE-030616-252]
17. zbtb18 ENSDARG00000028228 3653 2.546 - - 0.958 0.772 - 0.816 - - - zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
18. dcbld2 ENSDARG00000062177, ENSDARG00000112201 3795 2.512 - - - - 0.919 0.730 0.863 - - discoidin, CUB and LCCL domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1822]
19. hmp19 2554 2.512 - 0.995 - - - 0.804 - - 0.713 HMP19 protein
20. srsf3b ENSDARG00000059360 14888 2.501 0.969 - - - 0.828 - - - 0.704 serine/arginine-rich splicing factor 3b [Source:ZFIN;Acc:ZDB-GENE-071005-2]
21. nr2f1a ENSDARG00000052695 5037 2.492 - - - - 0.846 0.870 - - 0.776 nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
22. cdc6 ENSDARG00000009942, ENSDARG00000109602 2540 2.491 - - 0.938 - - 0.847 0.706 - - cell division cycle 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-131]
23. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 2.488 - - 0.844 - - 0.863 0.781 - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
24. capzb ENSDARG00000100252 10444 2.47 - 0.982 - - - 0.770 0.718 - - capping actin protein of muscle Z-line subunit beta [Source:ZFIN;Acc:ZDB-GENE-030131-7023]
25. nin ENSDARG00000060298 1558 2.469 - - 0.958 - - 0.794 - - 0.717 ninein (GSK3B interacting protein) [Source:ZFIN;Acc:ZDB-GENE-070725-1]
26. ube2a ENSDARG00000098466 12765 2.463 0.873 - 0.789 - - - 0.801 - - ubiquitin-conjugating enzyme E2A (RAD6 homolog) [Source:ZFIN;Acc:ZDB-GENE-030616-72]
27. GATAD2B ENSDARG00000005834 3855 2.461 - - 0.915 - - 0.750 - - 0.796 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
28. CDIP1 ENSDARG00000076118 1294 2.454 0.997 - - - - 0.722 0.735 - - cell death-inducing p53 target 1 [Source:ZFIN;Acc:ZDB-GENE-070720-18]
29. WDFY3 ENSDARG00000078890 2092 2.44 - - 0.932 - - 0.799 0.709 - - WD repeat and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070705-153]
30. plk1 ENSDARG00000058471, ENSDARG00000111745 7020 2.425 - - 0.809 - - 0.805 0.811 - - polo-like kinase 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-021115-7]
31. marcksa ENSDARG00000004049 2518 2.415 - - - 0.713 0.944 - - - 0.758 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
32. nrarpb ENSDARG00000018958 6225 2.371 - - - - 0.885 0.711 - - 0.775 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
33. ube2d1b ENSDARG00000038576 5971 2.37 - 0.879 - - - 0.780 - - 0.711 ubiquitin-conjugating enzyme E2D 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2735]
34. hmg20a ENSDARG00000031198 1763 2.345 - - - - 0.883 - 0.757 - 0.705 high mobility group 20A [Source:ZFIN;Acc:ZDB-GENE-030131-5107]
35. hnrnpub ENSDARG00000004735 16496 2.324 - - - - - 0.727 0.815 - 0.782 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
36. arid1aa ENSDARG00000101710 3644 2.307 - - - - - 0.832 - 0.712 0.763 AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
37. ssbp3b ENSDARG00000030155 7163 2.3 - - 0.862 - - 0.723 0.715 - - single stranded DNA binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-040426-2801]
38. kdm4b ENSDARG00000099675 2037 2.291 - - - - - 0.762 - 0.725 0.804 lysine (K)-specific demethylase 4B [Source:ZFIN;Acc:ZDB-GENE-060503-664]
39. npm1b ENSDARG00000037675 5448 2.279 - - - - - 0.869 0.705 0.705 - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
40. ilf3b ENSDARG00000105177 9473 2.275 - 0.824 0.717 - - - 0.734 - - interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
41. pum1 ENSDARG00000099256 5017 2.251 - - - - - 0.795 0.749 - 0.707 pumilio RNA-binding family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2074]
42. bmpr2a ENSDARG00000011941 2972 2.242 - - - - - 0.819 0.706 - 0.717 bone morphogenetic protein receptor, type II a (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-070618-1]
43. hmgb3a ENSDARG00000056725 15668 2.235 - - - - - 0.754 0.777 - 0.704 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
44. kdm6bb ENSDARG00000056929 4807 2.23 - - - - - 0.780 0.730 - 0.720 lysine (K)-specific demethylase 6B, b [Source:ZFIN;Acc:ZDB-GENE-040724-166]
45. ddx19 ENSDARG00000005699 4602 2.23 - - - - - 0.722 0.756 - 0.752 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
46. zswim5 ENSDARG00000055900 4243 2.207 - - - - - 0.719 0.730 - 0.758 zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
47. hif1an ENSDARG00000031915 2098 2.197 - - - 0.723 - - 0.735 - 0.739 hypoxia inducible factor 1 subunit alpha inhibitor [Source:ZFIN;Acc:ZDB-GENE-030826-19]
48. lsm8 ENSDARG00000091656, ENSDARG00000111914 2751 2.169 - - - - - 0.735 0.720 - 0.714 LSM8 homolog, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-070629-3]
49. hmgb2b ENSDARG00000053990 11519 2.163 - - - - 0.705 - 0.707 - 0.751 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
50. utp18 ENSDARG00000102618 1983 1.931 - 0.992 0.939 - - - - - - UTP18 small subunit (SSU) processome component [Source:ZFIN;Acc:ZDB-GENE-060929-668]
51. ddi2 ENSDARG00000006477 4190 1.924 0.983 - - - 0.941 - - - - DNA-damage inducible protein 2 [Source:ZFIN;Acc:ZDB-GENE-031030-15]
52. necap2 ENSDARG00000046002 4372 1.913 0.984 - 0.929 - - - - - - NECAP endocytosis associated 2 [Source:ZFIN;Acc:ZDB-GENE-050522-67]
53. med13b ENSDARG00000003910 1143 1.905 - - 0.945 - 0.960 - - - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
54. atxn7l3 ENSDARG00000029331 531 1.9 - - 0.941 - 0.959 - - - - ataxin 7-like 3 [Source:ZFIN;Acc:ZDB-GENE-030616-253]
55. rfc1 ENSDARG00000054799 1416 1.899 - - 0.929 - 0.970 - - - - replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]
56. brd3b ENSDARG00000100129 6387 1.894 0.989 - - - 0.905 - - - - bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
57. ptgs1 ENSDARG00000052148 2443 1.875 0.950 - 0.925 - - - - - - prostaglandin-endoperoxide synthase 1 [Source:ZFIN;Acc:ZDB-GENE-020530-1]
58. sdhc ENSDARG00000038608, ENSDARG00000110542, ENSDARG00000114672 8862 1.872 0.955 - 0.917 - - - - - - succinate dehydrogenase complex, subunit C, integral membrane protein [Source:ZFIN;Acc:ZDB-GENE-040801-26]
59. rab5c ENSDARG00000026712 4733 1.869 - - 0.954 - 0.915 - - - - RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
60. pdlim5b ENSDARG00000027600 4252 1.86 0.991 - - - 0.869 - - - - PDZ and LIM domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-908]
61. eif3g ENSDARG00000016889 10367 1.831 - 0.965 - - - - 0.866 - - eukaryotic translation initiation factor 3, subunit G [Source:ZFIN;Acc:ZDB-GENE-040426-1076]
62. metap2b_1 ENSDARG00000102571 5507 1.823 0.831 0.992 - - - - - - - methionyl aminopeptidase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2172]
63. zfand5b ENSDARG00000002271 4145 1.813 0.995 - - - - 0.818 - - - zinc finger, AN1-type domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-875]
64. gpbp1l1 ENSDARG00000075569, ENSDARG00000112704 3478 1.807 - - 0.955 - 0.852 - - - - GC-rich promoter binding protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-031118-220]
65. uqcrc2a ENSDARG00000014794 3949 1.803 0.989 - - - - - 0.814 - - ubiquinol-cytochrome c reductase core protein 2a [Source:ZFIN;Acc:ZDB-GENE-040718-405]
66. hoxc1a ENSDARG00000070337 1460 1.798 - 0.995 - - - 0.803 - - - homeobox C1a [Source:ZFIN;Acc:ZDB-GENE-000822-2]
67. Sep-02 Sep-02 10074 1.797 0.976 - - - - 0.821 - - -
68. syf2 ENSDARG00000004706 2463 1.794 0.998 - - - - - 0.796 - - SYF2 pre-mRNA-splicing factor [Source:ZFIN;Acc:ZDB-GENE-040801-170]
69. trpc4apb ENSDARG00000020647 670 1.794 - - 0.947 - - 0.847 - - - transient receptor potential cation channel, subfamily C, member 4 associated protein b [Source:ZFIN;Acc:ZDB-GENE-000330-2]
70. ube2nb ENSDARG00000045877 4583 1.792 - - 0.919 - - 0.873 - - - ubiquitin-conjugating enzyme E2Nb [Source:ZFIN;Acc:ZDB-GENE-040426-1291]
71. zgc:114130 ENSDARG00000040725, ENSDARG00000116854 806 1.79 0.998 - - - - 0.792 - - - zgc:114130 [Source:ZFIN;Acc:ZDB-GENE-050913-48]
72. CABZ01081490.1 ENSDARG00000111653 11892 1.79 - - 0.856 - 0.934 - - - -
73. mrps6 ENSDARG00000039543 1892 1.787 - 0.991 - - - - 0.796 - - mitochondrial ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-060825-59]
74. ercc2 ENSDARG00000021985 678 1.782 - - 0.945 - - 0.837 - - - excision repair cross-complementation group 2 [Source:ZFIN;Acc:ZDB-GENE-040426-997]
75. pdcd5 ENSDARG00000026072 3135 1.776 - - - - 0.956 - 0.820 - - programmed cell death 5 [Source:ZFIN;Acc:ZDB-GENE-040426-980]
76. gse1 ENSDARG00000062020 2337 1.764 0.985 - - - - - 0.779 - - Gse1 coiled-coil protein [Source:ZFIN;Acc:ZDB-GENE-030131-9569]
77. nuf2 ENSDARG00000034624 2252 1.764 - - - - 0.970 - 0.794 - - NUF2, NDC80 kinetochore complex component, homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1121]
78. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 1.762 - - - - 0.980 0.782 - - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
79. vangl2 ENSDARG00000027397 2418 1.758 - - 0.964 - - 0.794 - - - VANGL planar cell polarity protein 2 [Source:ZFIN;Acc:ZDB-GENE-020507-3]
80. rab14 ENSDARG00000074246 4084 1.758 0.996 - - - - - 0.762 - - RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
81. gpatch2 1221 1.751 - - 0.956 - - 0.795 - - - G patch domain containing 2, transcript variant X1
82. znf865 ENSDARG00000036698 15532 1.751 - - - - 0.924 - 0.827 - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
83. mapk12b ENSDARG00000006409 2246 1.75 - - 0.919 - - 0.831 - - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
84. atp5j 4272 1.749 0.984 - - - - - 0.765 - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6, transcript variant X2
85. arhgap12b ENSDARG00000026482, ENSDARG00000109973 1142 1.744 - - 0.953 - - - 0.791 - - Rho GTPase activating protein 12b [Source:ZFIN;Acc:ZDB-GENE-040426-1727]
86. syt11a ENSDARG00000057913 1145 1.744 - - 0.947 - - 0.797 - - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
87. phb ENSDARG00000057414 9551 1.74 - 0.972 - - - - 0.768 - - prohibitin [Source:ZFIN;Acc:ZDB-GENE-030131-6577]
88. matn4 ENSDARG00000015947 10967 1.739 - 0.981 - - 0.758 - - - - matrilin 4 [Source:ZFIN;Acc:ZDB-GENE-050208-64]
89. acsl1 acsl1 4216 1.739 - 0.993 - - - - 0.746 - -
90. adh5 ENSDARG00000080010, ENSDARG00000111574 4980 1.733 - - 0.940 - - - 0.793 - - alcohol dehydrogenase 5 [Source:ZFIN;Acc:ZDB-GENE-011003-1]
91. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 1.732 - - 0.940 - - - - - 0.792 immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
92. slc2a15b ENSDARG00000053269 899 1.732 - - - - 0.958 0.774 - - - solute carrier family 2 (facilitated glucose transporter), member 15b [Source:ZFIN;Acc:ZDB-GENE-050508-1]
93. mcts1 ENSDARG00000025972 4662 1.731 - - - - 0.920 - 0.811 - - malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
94. tcf3b ENSDARG00000099999, ENSDARG00000112646 3589 1.731 - - 0.962 - - - - - 0.769 transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-051113-64]
95. TUSC5_1 TUSC5_1 320 1.73 - - - - 0.954 0.776 - - -
96. nudt3a ENSDARG00000016256 2713 1.73 - - 0.955 - - - 0.775 - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
97. psmc5 ENSDARG00000015315 8458 1.729 - - - - 0.963 - 0.766 - - proteasome 26S subunit, ATPase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6547]
98. myef2 ENSDARG00000059398 6050 1.725 0.985 - - - - - - - 0.740 myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
99. fkbp3 ENSDARG00000098059 5428 1.725 0.984 - 0.741 - - - - - - FK506 binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-419]
100. srsf6a ENSDARG00000013729 8576 1.723 0.974 - - - - - 0.749 - - serine/arginine-rich splicing factor 6a [Source:ZFIN;Acc:ZDB-GENE-040426-2824]

There are 2565 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA