Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for nucks1a

Gene Name Gene ID Reads Annotation
nucks1a ENSDARG00000078473 28285 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]










Genes with expression patterns similar to nucks1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nucks1a ENSDARG00000078473 28285 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
2. prmt1 ENSDARG00000010246 11311 4.163 - 0.821 0.834 0.922 - 0.813 - 0.773 - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
3. elavl1 11672 3.601 - - 0.802 0.901 - 0.908 0.990 - - ELAV like RNA binding protein 1, transcript variant X3
4. sncb ENSDARG00000104945 8197 3.037 - - 0.720 0.832 - 0.768 - 0.717 - synuclein, beta [Source:ZFIN;Acc:ZDB-GENE-040426-1615]
5. ddx5 ENSDARG00000038068 35302 2.887 0.729 - 0.701 - - 0.708 - 0.749 - DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
6. hdac1 ENSDARG00000015427 19804 2.529 - - 0.828 - - 0.930 - 0.771 - histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
7. BX511086.1 BX511086.1 8308 2.509 - - 0.732 - - 0.823 - - 0.954
8. hmgb1b ENSDARG00000030479 10398 2.484 - - 0.894 - - 0.810 - 0.780 - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
9. top1l ENSDARG00000070545 40529 2.444 0.852 - - - 0.716 - - 0.876 - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
10. hist2h2l ENSDARG00000068996, ENSDARG00000112150 10411 2.443 - 0.777 - - - 0.739 - - 0.927 histone 2, H2, like [Source:ZFIN;Acc:ZDB-GENE-031118-36]
11. pl10 pl10 10795 2.439 - 0.756 - - 0.803 0.880 - - -
12. marcksb ENSDARG00000008803 42949 2.438 - - - 0.723 - 0.901 - 0.814 - myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
13. ANKRD11 ENSDARG00000051886 10024 2.438 - 0.750 0.799 - - 0.889 - - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
14. arnt2 ENSDARG00000103697 5731 2.429 - - 0.844 - - 0.820 - 0.765 - aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
15. mapre1b ENSDARG00000002659 9119 2.403 - - - 0.857 - 0.840 - 0.706 - microtubule-associated protein, RP/EB family, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2256]
16. apex1 ENSDARG00000045843 6345 2.401 - - 0.859 - - 0.739 - 0.803 - APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
17. h2afvb ENSDARG00000116491 35692 2.396 - 0.725 - - - 0.858 - 0.813 - H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
18. kmt2bb ENSDARG00000060697 5230 2.39 - 0.701 0.828 - - 0.861 - - - lysine (K)-specific methyltransferase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080521-1]
19. srrm1 ENSDARG00000001244 4972 2.389 - 0.771 0.849 - - 0.769 - - - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
20. zgc:77262 ENSDARG00000044545 5563 2.386 - - 0.837 0.844 - - - 0.705 - zgc:77262 [Source:ZFIN;Acc:ZDB-GENE-040426-1811]
21. tcea1 ENSDARG00000003531 2912 2.368 - 0.807 - - - 0.728 - 0.833 - transcription elongation factor A (SII), 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8049]
22. creb1a ENSDARG00000053586 5068 2.367 - 0.728 - 0.831 - 0.808 - - - cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
23. fam60al 2846 2.366 - - 0.772 - - 0.816 - 0.778 - family with sequence similarity 60, member A, like
24. nfya ENSDARG00000042004, ENSDARG00000114231 6606 2.365 - - 0.788 - - 0.837 - 0.740 - nuclear transcription factor Y, alpha [Source:ZFIN;Acc:ZDB-GENE-010501-1]
25. caprin1a ENSDARG00000009346, ENSDARG00000112212 9675 2.361 - 0.745 0.851 - - 0.765 - - - cell cycle associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-226]
26. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 2.358 - - 0.785 - - 0.809 - 0.764 - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
27. hmgb2b ENSDARG00000053990 11519 2.358 - - - 0.918 0.705 - - 0.735 - high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
28. sumo3a ENSDARG00000028119 13447 2.357 - - - - 0.751 0.843 - 0.763 - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
29. snrnp70 ENSDARG00000077126 5921 2.356 - - 0.816 - - 0.798 - 0.742 - small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
30. matr3l1.1 ENSDARG00000000394, ENSDARG00000001162 3757 2.349 - - 0.704 - - 0.714 - - 0.931 matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
31. stmn1a ENSDARG00000004169 21169 2.34 - - 0.706 0.905 - - - 0.729 - stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
32. nono ENSDARG00000020482, ENSDARG00000115783 12482 2.333 - 0.704 - - - 0.852 - 0.777 - non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
33. kdm1a ENSDARG00000060679 6152 2.332 - 0.771 0.854 - - - - 0.707 - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
34. foxp4 ENSDARG00000076120 9458 2.323 - 0.750 0.824 - - 0.749 - - - forkhead box P4 [Source:ZFIN;Acc:ZDB-GENE-101207-1]
35. pcdh1gc5 ENSDARG00000104826 10052 2.323 - - 0.773 - - 0.772 - 0.778 - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
36. hnrpl 6412 2.298 - 0.721 0.828 - - 0.749 - - - heterogeneous nuclear ribonucleoprotein L, transcript variant X1
37. ENDOD1_5 ENDOD1_5 8723 2.293 - 0.738 0.794 - - 0.761 - - -
38. akirin2 ENSDARG00000058729 13245 2.28 - - - - 0.779 0.739 - 0.762 - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
39. rcor2 ENSDARG00000008278 1678 2.264 - - 0.767 - - 0.745 - 0.752 - REST corepressor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1812]
40. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.854 - - - - - - 0.996 0.858 - high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
41. thrap3b ENSDARG00000098228 4396 1.821 - - - - 0.837 - 0.984 - - thyroid hormone receptor associated protein 3b [Source:ZFIN;Acc:ZDB-GENE-040516-9]
42. hp1bp3 ENSDARG00000044669 23708 1.804 - - - 0.886 - 0.918 - - - heterochromatin protein 1, binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060810-79]
43. hoxc6a ENSDARG00000070343 2839 1.794 - - - - - 0.810 0.984 - - homeobox C6a [Source:ZFIN;Acc:ZDB-GENE-990415-113]
44. calb2b ENSDARG00000036344 2417 1.792 - - - - - 0.800 0.992 - - calbindin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1668]
45. hnrnpab hnrnpab 72354 1.787 - - - - - 0.884 - 0.903 -
46. TUBA1A ENSDARG00000001889 25294 1.773 - - - - - 0.817 - - 0.956 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
47. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 1.769 - - 0.908 - - 0.861 - - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
48. eif3ha ENSDARG00000102452 9238 1.758 - - - 0.831 - - - - 0.927 eukaryotic translation initiation factor 3, subunit H, a [Source:ZFIN;Acc:ZDB-GENE-040808-19]
49. sipa1l2 ENSDARG00000061640 4545 1.751 - - - - - 0.762 0.989 - - signal-induced proliferation-associated 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-050208-66]
50. ccnt2b ENSDARG00000036510 3353 1.748 - - - - - 0.821 - - 0.927 cyclin T2b [Source:ZFIN;Acc:ZDB-GENE-030131-183]
51. lig3 ENSDARG00000052553 2665 1.742 - - - 0.821 - - - - 0.921 ligase III, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-030131-8453]
52. mcm5 ENSDARG00000019507 6407 1.741 - 0.755 - - - - 0.986 - - minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
53. nhp2 ENSDARG00000069422 9925 1.735 - - - - 0.811 - - - 0.924 NHP2 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-533]
54. wu:fb17g07 wu:fb17g07 10567 1.733 - - - 0.870 - 0.863 - - -
55. tia1l ENSDARG00000026476, ENSDARG00000109827 9378 1.731 - 0.744 - - - - 0.987 - - cytotoxic granule-associated RNA binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2167]
56. zgc:112425 zgc:112425 293873 1.73 - - - - - 0.797 - 0.933 -
57. psmd14 ENSDARG00000063100 15711 1.723 - - - - - 0.730 0.993 - - proteasome 26S subunit, non-ATPase 14 [Source:ZFIN;Acc:ZDB-GENE-070410-56]
58. spen ENSDARG00000074245, ENSDARG00000116696 3054 1.715 - - - - - 0.726 0.989 - - spen family transcriptional repressor [Source:ZFIN;Acc:ZDB-GENE-050309-70]
59. smc1al ENSDARG00000058203 8838 1.713 - - 0.826 - - 0.887 - - - structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
60. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 1.694 - - - 0.858 - 0.836 - - - chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
61. ZFHX3 ENSDARG00000103057 7759 1.694 - - 0.845 - - 0.849 - - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
62. TNRC6C_2 TNRC6C_2 2444 1.693 - - 0.836 - - 0.857 - - -
63. MAP4K4 ENSDARG00000098670 4665 1.692 - - 0.871 - - 0.821 - - - mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
64. psmd1 ENSDARG00000003189 4373 1.691 - 0.902 0.789 - - - - - - proteasome 26S subunit, non-ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-810]
65. psmb3 ENSDARG00000013938 10744 1.691 - - - - - 0.703 0.988 - - proteasome subunit beta 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2682]
66. znf865 ENSDARG00000036698 15532 1.69 - 0.792 - - - 0.898 - - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
67. ubr5 ENSDARG00000018192 9267 1.686 - 0.830 0.856 - - - - - - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
68. whsc1l1 8544 1.686 - - - - - 0.866 - 0.820 - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
69. seta ENSDARG00000031495 39977 1.684 - - - - - 0.836 - - 0.848 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
70. ipo7 ENSDARG00000035751 7095 1.678 - 0.868 - - 0.810 - - - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
71. fen1 ENSDARG00000011404 3358 1.678 - 0.898 0.780 - - - - - - flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
72. ssbp4 ENSDARG00000056483 10196 1.677 - - - - - 0.851 - 0.826 - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
73. msi1 ENSDARG00000010710 2634 1.674 - - 0.857 - - 0.817 - - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
74. u2af2a ENSDARG00000012505 2920 1.668 - 0.897 0.771 - - - - - - U2 small nuclear RNA auxiliary factor 2a [Source:ZFIN;Acc:ZDB-GENE-050706-131]
75. tmem35 ENSDARG00000052567 5685 1.666 - - - - - 0.819 - 0.847 - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
76. aurka ENSDARG00000012485 3304 1.663 - - - - - 0.737 - - 0.926 aurora kinase A [Source:ZFIN;Acc:ZDB-GENE-040801-161]
77. zeb1b ENSDARG00000013207, ENSDARG00000113922 2571 1.66 - 0.894 - - - 0.766 - - - zinc finger E-box binding homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010621-1]
78. pum1 ENSDARG00000099256 5017 1.659 - 0.888 - - - 0.771 - - - pumilio RNA-binding family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2074]
79. uqcrc2a ENSDARG00000014794 3949 1.656 - 0.738 - - - - - - 0.918 ubiquinol-cytochrome c reductase core protein 2a [Source:ZFIN;Acc:ZDB-GENE-040718-405]
80. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 1.656 - - 0.764 - - - - 0.892 - heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
81. ylpm1 ENSDARG00000043680 7676 1.653 - - 0.883 - - 0.770 - - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
82. usp7 ENSDARG00000073710 7017 1.652 - - 0.827 - 0.825 - - - - ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
83. gipc1 ENSDARG00000104483 2913 1.651 - - 0.894 - - 0.757 - - - GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
84. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.642 - - 0.884 - - 0.758 - - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
85. actr1 ENSDARG00000011611 3879 1.64 - 0.773 - - - 0.867 - - - ARP1 actin related protein 1, centractin [Source:ZFIN;Acc:ZDB-GENE-040426-2695]
86. ddx19 ENSDARG00000005699 4602 1.639 - - 0.802 - - 0.837 - - - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
87. pds5a ENSDARG00000055022, ENSDARG00000115793 3842 1.638 - - 0.828 - - 0.810 - - - PDS5 cohesin associated factor A [Source:ZFIN;Acc:ZDB-GENE-040426-1612]
88. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 1.637 - - 0.879 - - 0.758 - - - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
89. slbp ENSDARG00000100558 3405 1.635 - - 0.785 - - - - 0.850 - stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
90. CR936437.1 CR936437.1 6465 1.635 - - 0.866 - - - - 0.769 -
91. lypla2 ENSDARG00000053656 8971 1.634 - 0.761 - - - 0.873 - - - lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
92. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 1.634 - - - 0.828 - 0.806 - - - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
93. ctnnb1 ENSDARG00000014571 12004 1.633 - - 0.868 - - 0.765 - - - catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
94. add3a ENSDARG00000040874 4938 1.63 - 0.704 - - - - - - 0.926 adducin 3 (gamma) a [Source:ZFIN;Acc:ZDB-GENE-030131-2721]
95. rbb4 rbb4 15541 1.629 - - 0.876 - - 0.753 - - -
96. jarid2b ENSDARG00000062268 2206 1.628 - - 0.811 - - 0.817 - - - jumonji, AT rich interactive domain 2b [Source:ZFIN;Acc:ZDB-GENE-060503-246]
97. cx43.4 ENSDARG00000007099 16369 1.627 - 0.837 - - - 0.790 - - - connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
98. kmt2a ENSDARG00000004537 2169 1.626 - - 0.839 - - 0.787 - - - lysine (K)-specific methyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080521-3]
99. nucks1b ENSDARG00000012777 4468 1.624 - - 0.780 0.844 - - - - - nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
100. cdc34b ENSDARG00000012627 3879 1.624 - 0.833 - - - - - 0.791 - cell division cycle 34 homolog (S. cerevisiae) b [Source:ZFIN;Acc:ZDB-GENE-040718-439]

There are 1664 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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