Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for nrxn1a

Gene Name Gene ID Reads Annotation
nrxn1a ENSDARG00000061647, ENSDARG00000111866 1069 neurexin 1a [Source:ZFIN;Acc:ZDB-GENE-070206-1]










Genes with expression patterns similar to nrxn1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nrxn1a ENSDARG00000061647, ENSDARG00000111866 1069 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 neurexin 1a [Source:ZFIN;Acc:ZDB-GENE-070206-1]
2. syt11a ENSDARG00000057913 1145 4.12 0.713 0.788 - - - 0.942 0.883 0.794 - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
3. stx1b ENSDARG00000000503 2724 4.052 0.786 0.708 0.707 - - 0.961 0.890 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
4. SV2B SV2B 208 3.428 0.822 0.749 - - - 0.976 0.881 - -
5. gap43 ENSDARG00000099744 4114 3.392 0.801 - - - - 0.960 0.895 - 0.736 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
6. atp6v0cb ENSDARG00000036577 3472 3.372 - - - - - 0.952 0.875 0.794 0.751 ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
7. cdk5r1b ENSDARG00000045087 2075 3.371 0.806 - - - - 0.901 0.875 0.789 - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
8. amph ENSDARG00000007663 599 3.368 0.801 0.749 - - - 0.959 0.859 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
9. scrt2 ENSDARG00000056175 4331 3.362 0.799 0.734 - - - 0.993 0.836 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
10. nrn1a ENSDARG00000071860 1311 3.349 0.773 0.793 - - - 0.959 0.824 - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
11. kcnc3a ENSDARG00000055855 1821 3.307 0.705 - - 0.735 - 0.965 0.902 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
12. dpysl3 ENSDARG00000002587 4381 3.268 0.754 - - - - 0.896 0.897 - 0.721 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
13. rap2ip rap2ip 681 3.255 - 0.725 - - - 0.953 0.853 - 0.724
14. nptx1l ENSDARG00000074671 569 3.212 0.749 0.742 - - - 0.917 0.804 - - neuronal pentraxin 1 like [Source:ZFIN;Acc:ZDB-GENE-040426-2418]
15. SPOCK1 ENSDARG00000074644 794 3.209 0.717 - - - - 0.861 0.900 - 0.731 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
16. tuba2 ENSDARG00000045014 1490 3.187 0.717 - - - - 0.917 0.833 - 0.720 tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
17. dnajc5aa ENSDARG00000042948 2885 3.179 0.773 - - - - 0.873 0.826 - 0.707 DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
18. EPB41L1 EPB41L1 1896 3.178 0.708 - 0.764 - - 0.816 0.890 - -
19. scn2b ENSDARG00000101713 796 3.103 0.747 0.749 - - - 0.724 0.883 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
20. elavl4 ENSDARG00000045639 998 3.062 0.748 - - - - 0.708 0.890 - 0.716 ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
21. CLIP3 ENSDARG00000054456 734 3.057 0.722 - - - - 0.828 0.807 - 0.700 CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
22. tmem35 ENSDARG00000052567 5685 3.015 0.721 - - - - 0.767 0.798 - 0.729 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
23. stmn2a ENSDARG00000033234 2272 2.706 0.825 - - - - 0.967 0.914 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
24. rab3ab ENSDARG00000043835 1267 2.674 0.804 - - - - 0.980 0.890 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
25. TUBB8P7_1 TUBB8P7_1 2722 2.662 0.796 - - - - 0.984 0.882 - -
26. snap25a ENSDARG00000020609 4537 2.645 0.798 - - - - 0.985 0.862 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
27. C7H4orf48 C7H4orf48 1455 2.631 0.821 - - - - 0.980 0.830 - -
28. fam219ab ENSDARG00000013813 591 2.624 - 0.815 - - - 0.918 0.891 - - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
29. tuba1c ENSDARG00000055216 8384 2.622 0.761 - - - - 0.975 0.886 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
30. lhx5 ENSDARG00000057936 785 2.622 0.760 - - - - 0.968 0.894 - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
31. cadm3 ENSDARG00000057013 1545 2.621 0.795 - - - - 0.981 0.845 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
32. sh3gl2 sh3gl2 1305 2.612 0.730 - - - - 0.977 0.905 - -
33. gabra5 ENSDARG00000070730 156 2.604 0.805 - - - - 0.915 0.884 - - gamma-aminobutyric acid (GABA) A receptor, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-081104-30]
34. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 2.603 0.733 - - - - 0.986 0.884 - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
35. neflb ENSDARG00000012426 298 2.6 - 0.815 - - - 0.890 0.895 - - neurofilament, light polypeptide b [Source:ZFIN;Acc:ZDB-GENE-060312-44]
36. TUSC5 TUSC5 1436 2.597 0.786 - - - - 0.968 0.843 - -
37. plp1a ENSDARG00000103732 3544 2.595 0.789 - - - - 0.935 0.871 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
38. adam23a ENSDARG00000062323 580 2.587 0.777 - - - - 0.968 0.842 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
39. sez6l2 ENSDARG00000076052 360 2.583 - 0.725 - - - 0.977 0.881 - - seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
40. slc1a2b ENSDARG00000102453 3136 2.583 0.776 - - - - 0.960 0.847 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
41. mdkb ENSDARG00000020708 5393 2.578 0.801 - - - - 0.951 0.826 - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
42. gfap ENSDARG00000025301 5584 2.57 0.715 - - - - 0.965 0.890 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
43. slc17a6b ENSDARG00000041150 823 2.57 - 0.815 - - - 0.939 0.816 - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
44. pcdh1gc5 ENSDARG00000104826 10052 2.568 0.711 - - - - 0.986 0.871 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
45. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.566 0.756 - - - - 0.953 0.857 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
46. MAP1A MAP1A 847 2.563 0.719 - - - - 0.978 0.866 - -
47. MAPK8IP1_1 MAPK8IP1_1 186 2.561 0.772 - - - - 0.917 0.872 - -
48. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.561 0.709 - - - - 0.975 0.877 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
49. nrarpb ENSDARG00000018958 6225 2.555 - - - - - 0.907 0.858 - 0.790 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
50. INA INA 950 2.549 0.751 - - - - 0.943 0.855 - -
51. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.549 0.701 - - - - 0.984 0.864 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
52. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.546 0.802 - - - - 0.933 0.811 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
53. nadl1.1 1200 2.545 0.760 - - - - 0.905 0.880 - - neural adhesion molecule L1.1, transcript variant X1
54. C19H7orf41 C19H7orf41 2243 2.543 - - - - - 0.897 0.920 - 0.726
55. dpysl5a ENSDARG00000011141 1827 2.541 - - - - - 0.942 0.891 - 0.708 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
56. mllt11 ENSDARG00000071026 2518 2.54 0.745 - - - - 0.985 0.810 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
57. stmn1b ENSDARG00000033655 9491 2.538 0.729 - - - - 0.948 0.861 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
58. cers6 ENSDARG00000053583 247 2.535 0.703 - - - - 0.960 0.872 - - ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
59. atp2b3b ENSDARG00000023445 1424 2.534 0.750 - - - - 0.943 0.841 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
60. snap25b ENSDARG00000058117 469 2.529 0.864 - - - - 0.850 0.815 - - synaptosomal-associated protein, 25b [Source:ZFIN;Acc:ZDB-GENE-980526-392]
61. hmp19 2554 2.518 - - - - - 0.932 0.849 - 0.737 HMP19 protein
62. si:ch211-11c15.3 si:ch211-11c15.3 1279 2.518 - - - - - 0.978 0.827 - 0.713
63. stmn4l ENSDARG00000043932 654 2.518 0.739 - - - - 0.965 0.814 - - stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
64. ppp3ca ENSDARG00000004988 615 2.515 0.782 - - - - 0.907 0.826 - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
65. slc1a3a ENSDARG00000104431 9888 2.508 0.755 - - - - 0.976 0.777 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
66. scn8aa ENSDARG00000005775 792 2.5 0.730 - - - - 0.945 0.825 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
67. lingo1a ENSDARG00000034165 179 2.498 - 0.815 - - - 0.882 0.801 - - leucine rich repeat and Ig domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-080327-16]
68. yjefn3 ENSDARG00000061692 211 2.495 - 0.815 - - - 0.868 0.812 - - YjeF N-terminal domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050208-755]
69. eno2 ENSDARG00000014287 2162 2.493 0.722 - - - - 0.930 0.841 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
70. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.492 0.744 - - - - 0.880 0.868 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
71. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.492 0.735 - - - - 0.979 0.778 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
72. prrt1 ENSDARG00000062208 368 2.492 0.804 - - - - 0.844 0.844 - - proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
73. ZFHX3 ENSDARG00000103057 7759 2.49 0.748 - - - - 0.886 0.856 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
74. STMN3 ENSDARG00000038465 1009 2.488 0.732 - - - - 0.864 0.892 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
75. pou4f1 ENSDARG00000005559 821 2.486 0.753 - - - - 0.842 0.891 - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
76. TUBB2A TUBB2A 142 2.48 - 0.815 - - - 0.923 0.742 - -
77. adcyap1b ENSDARG00000027740 1539 2.477 0.795 - - - - 0.953 0.729 - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
78. gng3 ENSDARG00000009553 2530 2.475 - 0.841 - - - 0.745 0.889 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
79. upf3a ENSDARG00000069297, ENSDARG00000111067 196 2.474 0.760 - - - - 0.847 0.867 - - UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
80. nova2 ENSDARG00000017673 7685 2.471 0.717 - - - - 0.903 0.851 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
81. kif5aa ENSDARG00000098936 2428 2.47 0.805 - - - - 0.963 - - 0.702 kinesin family member 5A, a [Source:ZFIN;Acc:ZDB-GENE-070912-141]
82. nkx1.2lb ENSDARG00000099427 220 2.468 - 0.746 - - - 0.877 0.845 - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
83. sept5a ENSDARG00000013843 1206 2.468 0.802 - - - - 0.842 0.824 - - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
84. calb1 ENSDARG00000031598 252 2.464 - 0.815 - - - 0.911 0.738 - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
85. epha4b ENSDARG00000011600 3110 2.464 0.755 - - - - 0.856 0.853 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
86. hmgb3a ENSDARG00000056725 15668 2.45 0.721 - - - - 0.891 0.838 - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
87. aplp1 ENSDARG00000098368 2317 2.448 0.772 - - - - 0.967 - - 0.709 amyloid beta (A4) precursor-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-040319-1]
88. lhx1a ENSDARG00000014018 958 2.446 - 0.722 - - - 0.875 0.849 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
89. LANCL2 ENSDARG00000045465 1221 2.439 0.832 - - - - 0.842 0.765 - - LanC lantibiotic synthetase component C-like 2 (bacterial) [Source:ZFIN;Acc:ZDB-GENE-070209-191]
90. AGO1 ENSDARG00000092644 4521 2.438 0.808 - - - - 0.803 0.827 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
91. pnoca ENSDARG00000025024 467 2.432 0.727 - - - - 0.871 0.834 - - prepronociceptin a [Source:ZFIN;Acc:ZDB-GENE-101229-1]
92. UBE2QL1 ENSDARG00000079276 3474 2.432 0.762 - - - - 0.817 0.853 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
93. syn1 ENSDARG00000060368, ENSDARG00000111164 397 2.431 0.786 - - - - 0.763 0.882 - - synapsin I [Source:ZFIN;Acc:ZDB-GENE-081105-93]
94. hoxa9b ENSDARG00000056819 3081 2.431 0.787 - - - - 0.821 0.823 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
95. syt2a ENSDARG00000025206 681 2.429 0.778 - 0.724 - - 0.927 - - - synaptotagmin IIa [Source:ZFIN;Acc:ZDB-GENE-060503-315]
96. adam11 ENSDARG00000079204 298 2.426 0.767 - - - - 0.881 0.778 - - ADAM metallopeptidase domain 11 [Source:ZFIN;Acc:ZDB-GENE-070808-3]
97. fez1 ENSDARG00000023174 701 2.424 0.719 - - - - 0.945 0.760 - - fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
98. MAP6 MAP6 643 2.421 - 0.767 - - - 0.782 0.872 - -
99. zic4 ENSDARG00000031307 1228 2.414 0.719 - - - - 0.949 0.746 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
100. nmnat2 ENSDARG00000004580 370 2.413 0.752 - - - - 0.953 0.708 - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]

There are 1966 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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