Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for nr1h3

Gene Name Gene ID Reads Annotation
nr1h3 ENSDARG00000098439 859 nuclear receptor subfamily 1, group H, member 3 [Source:ZFIN;Acc:ZDB-GENE-050410-7]










Genes with expression patterns similar to nr1h3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nr1h3 ENSDARG00000098439 859 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 nuclear receptor subfamily 1, group H, member 3 [Source:ZFIN;Acc:ZDB-GENE-050410-7]
2. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 1.938 - - 0.992 - - - - 0.946 - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
3. mgaa ENSDARG00000078784 1344 1.892 - - 0.981 - - - - 0.911 - MGA, MAX dimerization protein a [Source:ZFIN;Acc:ZDB-GENE-030603-1]
4. tmem2 2572 1.875 - - 0.965 - - - - 0.910 - transmembrane protein 2, transcript variant X1
5. rpl7l1 ENSDARG00000042864 3256 1.851 - - 0.939 - - - - 0.912 - ribosomal protein L7-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-970]
6. axin2 ENSDARG00000100149 4223 1.848 - - 0.955 - - - - 0.893 - axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
7. crkl ENSDARG00000028699 2966 1.841 - - 0.955 - - - - 0.886 - v-crk avian sarcoma virus CT10 oncogene homolog-like [Source:ZFIN;Acc:ZDB-GENE-040426-2951]
8. rnf121 ENSDARG00000060282 1809 1.84 - - 0.956 - - - - 0.884 - ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
9. ddx27 ENSDARG00000091831 1471 1.838 - - 0.973 - - - - 0.865 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]
10. safb ENSDARG00000020467 5608 1.759 - - 0.944 - - - - 0.815 - scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
11. ppil4 ENSDARG00000043854, ENSDARG00000114623 858 1.738 - - - - - - 0.782 0.956 - peptidylprolyl isomerase (cyclophilin)-like 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6251]
12. eprs ENSDARG00000060494 4729 1.73 - - 0.908 - - - - 0.822 - glutamyl-prolyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-638]
13. zgc:158309 zgc:158309 2696 1.723 - - 0.988 - - - - - 0.735
14. BX571768.1 ENSDARG00000116980 711 1.713 - 0.725 0.988 - - - - - -
15. DLC1 ENSDARG00000079317 2149 1.71 0.731 - 0.979 - - - - - - DLC1 Rho GTPase activating protein [Source:ZFIN;Acc:ZDB-GENE-130206-12]
16. tbl3 ENSDARG00000052344 1530 1.697 - 0.721 0.976 - - - - - - transducin (beta)-like 3 [Source:ZFIN;Acc:ZDB-GENE-041114-104]
17. si:ch211-226m16.2 ENSDARG00000036785 2163 1.693 0.834 - 0.859 - - - - - - si:ch211-226m16.2 [Source:ZFIN;Acc:ZDB-GENE-030131-2302]
18. nap1l4b ENSDARG00000068868 3285 1.689 - 0.717 0.972 - - - - - - nucleosome assembly protein 1-like 4b [Source:ZFIN;Acc:ZDB-GENE-041114-168]
19. CR954963.1 ENSDARG00000097153 1135 1.689 - 0.737 - - - - - 0.952 -
20. ENSDARG00000089986 ENSDARG00000089986 308 1.684 0.734 - - - - - - 0.950 -
21. E2F2 E2F2 871 1.673 - - - - - - - 0.957 0.716
22. lztr1 ENSDARG00000015905, ENSDARG00000114621 632 1.67 - 0.720 - - - - - 0.950 - leucine-zipper-like transcription regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9564]
23. pum1 ENSDARG00000099256 5017 1.67 - - 0.854 - - - - 0.816 - pumilio RNA-binding family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2074]
24. ttk ENSDARG00000041361 3911 1.668 - - 0.864 - - - - 0.804 - ttk protein kinase [Source:ZFIN;Acc:ZDB-GENE-030123-1]
25. mpzl2b ENSDARG00000027345, ENSDARG00000113465 575 1.663 - 0.737 - - - - - 0.926 - myelin protein zero-like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8774]
26. dnttip2 ENSDARG00000057648 2381 1.649 - - - - - - - 0.922 0.727 deoxynucleotidyltransferase, terminal, interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080513-5]
27. C5H9orf142 C5H9orf142 548 1.644 - - - - - - 0.721 0.923 -
28. CU462878.1 ENSDARG00000090072 352 1.635 0.741 - - - - - - 0.894 - keratinocyte associated protein 3 [Source:NCBI gene;Acc:100538219]
29. stat2 ENSDARG00000031647, ENSDARG00000116348 441 1.633 - - - - - - - 0.931 0.702 signal transducer and activator of transcription 2 [Source:ZFIN;Acc:ZDB-GENE-080321-1]
30. med29 ENSDARG00000026448, ENSDARG00000109733 972 1.619 - 0.725 - - - - - 0.894 - mediator complex subunit 29 [Source:ZFIN;Acc:ZDB-GENE-021217-1]
31. E2F6 E2F6 1271 1.61 - - - - - - 0.708 0.902 -
32. samd11 ENSDARG00000077852 631 1.598 - - - - - - 0.738 0.860 - sterile alpha motif domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-060428-2]
33. lmo4b ENSDARG00000054749, ENSDARG00000115402 1397 1.581 - - - - - - 0.716 0.865 - LIM domain only 4b [Source:ZFIN;Acc:ZDB-GENE-030131-3570]
34. asap1b ENSDARG00000039729 842 1.552 - 0.742 - 0.810 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b [Source:ZFIN;Acc:ZDB-GENE-091112-16]
35. taf7 ENSDARG00000019572 1305 1.535 - - - 0.708 - - - 0.827 - TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-020419-18]
36. CT955967.1 ENSDARG00000099956 2885 1.504 - - - - - - - 0.761 0.743
37. mn1b ENSDARG00000079248 882 1.503 - 0.725 - 0.778 - - - - - meningioma 1b [Source:ZFIN;Acc:ZDB-GENE-080917-23]
38. si:dkeyp-118b1.2 ENSDARG00000079131 705 1.487 - 0.717 0.770 - - - - - - si:dkeyp-118b1.2 [Source:ZFIN;Acc:ZDB-GENE-030131-7685]
39. C8H17orf59 C8H17orf59 494 1.475 - - - - - 0.732 0.743 - -
40. TEAD3 TEAD3 8614 1.472 0.725 - 0.747 - - - - - -
41. uqcrc2a ENSDARG00000014794 3949 1.46 - 0.739 - - - - 0.721 - - ubiquinol-cytochrome c reductase core protein 2a [Source:ZFIN;Acc:ZDB-GENE-040718-405]
42. nap1l1 ENSDARG00000101813 819 1.443 0.740 - - - - - 0.703 - - nucleosome assembly protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-030516-2]
43. prr18 ENSDARG00000093768 409 0.996 - - 0.996 - - - - - - proline rich 18 [Source:ZFIN;Acc:ZDB-GENE-081107-6]
44. rexo1 ENSDARG00000026986 770 0.996 - - 0.996 - - - - - - REX1, RNA exonuclease 1 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-1650]
45. CABZ01068153.1 CABZ01068153.1 211 0.996 - - 0.996 - - - - - -
46. tmem194b tmem194b 724 0.996 - - 0.996 - - - - - -
47. si:ch211-283l16.1 ENSDARG00000112586 131 0.996 - - 0.996 - - - - - - si:ch211-283l16.1 [Source:ZFIN;Acc:ZDB-GENE-110913-44]
48. brap ENSDARG00000008560 821 0.996 - - 0.996 - - - - - - BRCA1 associated protein [Source:ZFIN;Acc:ZDB-GENE-040718-168]
49. zgc:195001 ENSDARG00000070484 3281 0.996 - - 0.996 - - - - - - zgc:195001 [Source:ZFIN;Acc:ZDB-GENE-081022-173]
50. foxd1 ENSDARG00000029179 726 0.996 - - 0.996 - - - - - - forkhead box D1 [Source:ZFIN;Acc:ZDB-GENE-040426-2094]
51. edn2 ENSDARG00000070578 276 0.995 - - 0.995 - - - - - - endothelin 2 [Source:ZFIN;Acc:ZDB-GENE-060503-774]
52. bbs2 ENSDARG00000041621, ENSDARG00000110124 321 0.995 - - 0.995 - - - - - - Bardet-Biedl syndrome 2 [Source:ZFIN;Acc:ZDB-GENE-020801-1]
53. s100a1 ENSDARG00000015543 274 0.995 - - 0.995 - - - - - - S100 calcium binding protein A1 [Source:ZFIN;Acc:ZDB-GENE-040916-1]
54. PKN2 ENSDARG00000101293 358 0.994 - - 0.994 - - - - - - protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
55. SEMA4C ENSDARG00000079611 610 0.994 - - 0.994 - - - - - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:ZFIN;Acc:ZDB-GENE-080303-16]
56. cactin ENSDARG00000059866 553 0.994 - - 0.994 - - - - - - cactin [Source:ZFIN;Acc:ZDB-GENE-060503-322]
57. atg4a ENSDARG00000014531 481 0.994 - - 0.994 - - - - - - autophagy related 4A, cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-050522-430]
58. thbs1b ENSDARG00000010785 3095 0.994 - - 0.994 - - - - - - thrombospondin 1b [Source:ZFIN;Acc:ZDB-GENE-020708-1]
59. dbf4 ENSDARG00000074796 489 0.994 - - 0.994 - - - - - - DBF4 zinc finger [Source:ZFIN;Acc:ZDB-GENE-091020-13]
60. dhx34 ENSDARG00000061168 349 0.994 - - 0.994 - - - - - - DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Source:ZFIN;Acc:ZDB-GENE-061207-30]
61. ARMCX3 ARMCX3 328 0.993 - - 0.993 - - - - - -
62. clk2a ENSDARG00000062954 1890 0.993 - - 0.993 - - - - - - CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]
63. rad18 ENSDARG00000027938 574 0.993 - - 0.993 - - - - - - RAD18 E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-745]
64. flad1 ENSDARG00000070390 604 0.993 - - 0.993 - - - - - - flavin adenine dinucleotide synthetase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-44]
65. ubl3b ENSDARG00000021556 1210 0.993 - - 0.993 - - - - - - ubiquitin-like 3b [Source:ZFIN;Acc:ZDB-GENE-040630-4]
66. smg6 ENSDARG00000100481 493 0.993 - - 0.993 - - - - - - SMG6 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-081107-52]
67. SON SON 510 0.993 - - 0.993 - - - - - -
68. fam203a fam203a 570 0.992 - - 0.992 - - - - - -
69. hsbp1a ENSDARG00000069425 1086 0.992 - - 0.992 - - - - - - heat shock factor binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050320-136]
70. HDX ENSDARG00000079382 513 0.992 - - 0.992 - - - - - - highly divergent homeobox [Source:ZFIN;Acc:ZDB-GENE-140106-165]
71. wu:fb52c12 wu:fb52c12 763 0.992 - - 0.992 - - - - - -
72. fdx1l 461 0.992 - - 0.992 - - - - - - ferredoxin 1-like
73. hrasb ENSDARG00000005651 662 0.992 - - 0.992 - - - - - - -Ha-ras Harvey rat sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-050522-466]
74. nlk1 ENSDARG00000006566 1123 0.991 - - 0.991 - - - - - - nemo-like kinase, type 1 [Source:ZFIN;Acc:ZDB-GENE-040701-1]
75. TUSC3 ENSDARG00000078854 1021 0.991 - - 0.991 - - - - - - tumor suppressor candidate 3 [Source:ZFIN;Acc:ZDB-GENE-050522-381]
76. egln2 ENSDARG00000062562 2500 0.991 - - 0.991 - - - - - - egl-9 family hypoxia-inducible factor 2 [Source:ZFIN;Acc:ZDB-GENE-060503-757]
77. tbpl1 ENSDARG00000036868 711 0.991 - - 0.991 - - - - - - TBP-like 1 [Source:ZFIN;Acc:ZDB-GENE-040520-2]
78. si:dkey-71p21.9 si:dkey-71p21.9 603 0.991 - - 0.991 - - - - - -
79. wtip ENSDARG00000103607 797 0.991 - - 0.991 - - - - - - WT1 interacting protein [Source:ZFIN;Acc:ZDB-GENE-050419-261]
80. klf5a 1072 0.991 - - 0.991 - - - - - - Kruppel-like factor 5a
81. srebf2 ENSDARG00000063438 1982 0.99 - - 0.990 - - - - - - sterol regulatory element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-070410-8]
82. xpc ENSDARG00000039754 515 0.99 - - 0.990 - - - - - - xeroderma pigmentosum, complementation group C [Source:ZFIN;Acc:ZDB-GENE-030131-8461]
83. irf2a ENSDARG00000007387 915 0.99 - - 0.990 - - - - - - interferon regulatory factor 2a [Source:ZFIN;Acc:ZDB-GENE-030131-4135]
84. ints9 ENSDARG00000067913 600 0.989 - - 0.989 - - - - - - integrator complex subunit 9 [Source:ZFIN;Acc:ZDB-GENE-061013-129]
85. rbm39b ENSDARG00000041853 1421 0.989 - - 0.989 - - - - - - RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB-GENE-050327-97]
86. GTSE1 ENSDARG00000013719 1115 0.989 - - 0.989 - - - - - - G-2 and S-phase expressed 1 [Source:ZFIN;Acc:ZDB-GENE-050522-493]
87. lpar6a ENSDARG00000062552 1348 0.989 - - 0.989 - - - - - - lysophosphatidic acid receptor 6a [Source:ZFIN;Acc:ZDB-GENE-061013-343]
88. CABZ01087568.1 CABZ01087568.1 1487 0.989 - - 0.989 - - - - - -
89. rspo2 ENSDARG00000079570, ENSDARG00000113124 1688 0.989 - - 0.989 - - - - - - R-spondin 2 [Source:ZFIN;Acc:ZDB-GENE-060503-667]
90. pard6b ENSDARG00000003865 990 0.989 - - 0.989 - - - - - - par-6 partitioning defective 6 homolog beta (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-090312-133]
91. CREB3L4 1085 0.988 - - 0.988 - - - - - - cAMP responsive element binding protein 3-like 4
92. BX323045.3 BX323045.3 1044 0.988 - - 0.988 - - - - - -
93. tnfaip3 ENSDARG00000027777 1066 0.988 - - 0.988 - - - - - - tumor necrosis factor, alpha-induced protein 3 [Source:ZFIN;Acc:ZDB-GENE-100212-2]
94. notch1a ENSDARG00000103554 498 0.988 - - 0.988 - - - - - - notch 1a [Source:ZFIN;Acc:ZDB-GENE-990415-173]
95. zc3h18 ENSDARG00000062506 1676 0.987 - - 0.987 - - - - - - zinc finger CCCH-type containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-13]
96. hopx ENSDARG00000089368 2342 0.987 - - 0.987 - - - - - - HOP homeobox [Source:ZFIN;Acc:ZDB-GENE-031016-2]
97. reep5 ENSDARG00000100742 1470 0.987 - - 0.987 - - - - - - receptor accessory protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9181]
98. rad51 ENSDARG00000041411, ENSDARG00000111948 1056 0.987 - - 0.987 - - - - - - RAD51 recombinase [Source:ZFIN;Acc:ZDB-GENE-040426-2286]
99. sort1a ENSDARG00000029402, ENSDARG00000117178 1480 0.987 - - 0.987 - - - - - - sortilin 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2329]
100. agpat3 ENSDARG00000036549 1093 0.987 - - 0.987 - - - - - - 1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2765]

There are 1185 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA