Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for notch3

Gene Name Gene ID Reads Annotation
notch3 ENSDARG00000052139 15033 notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]










Genes with expression patterns similar to notch3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. notch3 ENSDARG00000052139 15033 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
2. hnrnpub ENSDARG00000004735 16496 3.215 0.758 - - 0.805 - 0.854 - 0.798 - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
3. hmgb3a ENSDARG00000056725 15668 3.101 0.756 - 0.706 - - 0.924 - 0.715 - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
4. rrm2_1 ENSDARG00000020711, ENSDARG00000078069 11634 2.658 0.802 0.959 - - - - 0.897 - - ribonucleotide reductase M2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-25]
5. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.651 - 0.973 - - 0.740 0.938 - - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
6. lfng ENSDARG00000037879 11783 2.552 - - 0.761 0.843 - 0.948 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
7. nova2 ENSDARG00000017673 7685 2.535 0.705 - - 0.885 - 0.945 - - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
8. pou3f3a ENSDARG00000042032 2835 2.518 - - - 0.830 0.850 0.838 - - - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
9. wu:fc51f04 wu:fc51f04 7074 2.503 - - 0.837 0.765 - - 0.901 - -
10. elavl3 ENSDARG00000014420 8644 2.466 - - - 0.738 0.869 0.859 - - - ELAV like neuron-specific RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-980526-76]
11. fubp1 ENSDARG00000029248 15259 2.462 - 0.900 - 0.728 - - - 0.834 - far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
12. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 2.428 - - - 0.767 0.712 0.949 - - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
13. bcl11ab ENSDARG00000063153 3032 2.425 - - - 0.734 - 0.826 - 0.865 - B cell CLL/lymphoma 11Ab [Source:ZFIN;Acc:ZDB-GENE-061009-4]
14. tuba1c ENSDARG00000055216 8384 2.422 0.707 - - - - 0.936 - 0.779 - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
15. cdca7a ENSDARG00000077620 9345 2.416 - 0.898 - 0.814 - 0.704 - - - cell division cycle associated 7a [Source:ZFIN;Acc:ZDB-GENE-050417-29]
16. plp1a ENSDARG00000103732 3544 2.412 0.715 - - 0.825 - 0.872 - - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
17. nono ENSDARG00000020482, ENSDARG00000115783 12482 2.401 0.711 - - 0.778 - 0.912 - - - non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
18. marcksl1b ENSDARG00000035715 37390 2.387 - - 0.813 0.757 - - - 0.817 - MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
19. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.367 0.701 - - 0.769 - 0.897 - - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
20. sox3 ENSDARG00000053569 12016 2.365 0.743 - - - - - 0.894 0.728 - SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
21. srsf2a ENSDARG00000057484 25721 2.351 - - - 0.811 0.714 - 0.826 - - serine/arginine-rich splicing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2706]
22. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.311 - - - 0.720 - 0.882 - 0.709 - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
23. prtgb ENSDARG00000040442 12365 2.308 - - 0.808 0.771 - 0.729 - - - protogenin homolog b (Gallus gallus) [Source:ZFIN;Acc:ZDB-GENE-060302-1]
24. si:ch73-21g5.7 ENSDARG00000093156 9412 2.306 0.716 - - 0.735 - 0.855 - - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
25. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.298 - - 0.734 0.864 - - - 0.700 - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
26. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 2.292 - - - 0.813 - 0.737 - 0.742 - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
27. her2 ENSDARG00000038205 3219 2.285 0.721 - - 0.790 - 0.774 - - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
28. fam60al 2846 2.283 - - - 0.712 - 0.861 - 0.710 - family with sequence similarity 60, member A, like
29. ssbp4 ENSDARG00000056483 10196 2.262 0.763 - - - - 0.764 - 0.735 - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
30. pcdh19 ENSDARG00000034344 2378 2.241 - - 0.712 0.740 - 0.789 - - - protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
31. ube2e2 ENSDARG00000034670 5918 2.222 0.737 - - 0.717 - 0.768 - - - ubiquitin-conjugating enzyme E2E 2 [Source:ZFIN;Acc:ZDB-GENE-040801-237]
32. marcksa ENSDARG00000004049 2518 2.222 - - - 0.702 - 0.769 - 0.751 - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
33. zswim5 ENSDARG00000055900 4243 2.181 0.722 - - 0.713 - 0.746 - - - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
34. zgc:123194 zgc:123194 69174 2.146 0.717 - - - 0.711 0.718 - - -
35. MAP4K4 ENSDARG00000098670 4665 1.837 - 0.976 - - - 0.861 - - - mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
36. ZFHX3 ENSDARG00000103057 7759 1.796 - - - 0.823 - 0.973 - - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
37. ppp3r1a ENSDARG00000092659 9729 1.788 - 0.920 - - - - 0.868 - - protein phosphatase 3, regulatory subunit B, alpha a [Source:ZFIN;Acc:ZDB-GENE-081113-3]
38. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.777 - - - 0.821 - 0.956 - - - POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
39. scube2 ENSDARG00000037362 2833 1.767 - 0.970 - - - 0.797 - - - signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
40. TUBA1A ENSDARG00000001889 25294 1.754 - - - 0.802 - 0.952 - - - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
41. hes6 ENSDARG00000019335 4754 1.753 0.834 - - - - 0.919 - - - hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
42. CASK CASK 1750 1.751 - 0.980 - - - 0.771 - - -
43. hoxa10b ENSDARG00000031337 3992 1.746 - 0.971 - - - 0.775 - - - homeobox A10b [Source:ZFIN;Acc:ZDB-GENE-990415-97]
44. olfm2a ENSDARG00000077847 230 1.74 - 0.971 - - - 0.769 - - - olfactomedin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2882]
45. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 1.739 0.759 0.980 - - - - - - - small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
46. CABZ01057907.1 CABZ01057907.1 1140 1.717 - 0.979 - - - 0.738 - - -
47. nkx6.2 ENSDARG00000104735 5081 1.716 - 0.979 - - - 0.737 - - - NK6 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-070626-1]
48. her15.1 ENSDARG00000054560, ENSDARG00000054562 1500 1.715 - - - 0.782 - 0.933 - - - hairy and enhancer of split-related 15, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030707-2]
49. cdc14b ENSDARG00000021483 4958 1.715 - 0.982 - - - - 0.733 - - cell division cycle 14B [Source:ZFIN;Acc:ZDB-GENE-040426-820]
50. GATAD2B ENSDARG00000005834 3855 1.711 - 0.984 - - - 0.727 - - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
51. vezf1a ENSDARG00000008247 1449 1.706 - - - 0.774 - 0.932 - - - vascular endothelial zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-040108-4]
52. zgc:113208 ENSDARG00000035610, ENSDARG00000109302 1095 1.704 - 0.980 - - - 0.724 - - - zgc:113208 [Source:ZFIN;Acc:ZDB-GENE-050417-450]
53. nrarpb ENSDARG00000018958 6225 1.703 - - - 0.759 - 0.944 - - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
54. suds3 ENSDARG00000073737, ENSDARG00000116918 2416 1.686 - 0.964 - - - - 0.722 - - SDS3 homolog, SIN3A corepressor complex component [Source:ZFIN;Acc:ZDB-GENE-040801-236]
55. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 1.68 - - - 0.728 - 0.952 - - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
56. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.68 - 0.943 - 0.737 - - - - - splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
57. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 1.68 - - - 0.738 - 0.942 - - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
58. nes ENSDARG00000088805 2710 1.674 - - - 0.710 - 0.964 - - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
59. rab3ab ENSDARG00000043835 1267 1.671 0.775 - - - - 0.896 - - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
60. btg2 ENSDARG00000020298 6616 1.67 - - - 0.719 - 0.951 - - - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
61. sumo3a ENSDARG00000028119 13447 1.666 - - - - - 0.854 - 0.812 - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
62. insm1b ENSDARG00000053301 2032 1.656 - - - 0.819 - 0.837 - - - insulinoma-associated 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2602]
63. gfap ENSDARG00000025301 5584 1.656 0.712 - - - - 0.944 - - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
64. epha4b ENSDARG00000011600 3110 1.652 0.720 - - - - 0.932 - - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
65. h3f3d ENSDARG00000045248 43757 1.648 - - 0.844 - - 0.804 - - - H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
66. hp1bp3 ENSDARG00000044669 23708 1.641 - - - - - 0.816 - 0.825 - heterochromatin protein 1, binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060810-79]
67. zbtb18 ENSDARG00000028228 3653 1.64 - - - - - 0.924 - 0.716 - zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
68. mllt11 ENSDARG00000071026 2518 1.639 - - - - - 0.905 - 0.734 - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
69. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 1.634 - - - 0.753 - 0.881 - - - ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
70. st8sia2 ENSDARG00000018788 2183 1.627 - - - 0.744 - 0.883 - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
71. EFCC1 ENSDARG00000077826 1359 1.625 0.705 - - - - 0.920 - - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
72. vamp1 ENSDARG00000031283 3094 1.624 0.706 - - - - 0.918 - - - vesicle-associated membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2725]
73. ckbb ENSDARG00000043257 3503 1.624 0.715 - - - - 0.909 - - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
74. syt11a ENSDARG00000057913 1145 1.616 0.731 - - - - 0.885 - - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
75. IM:7163548 IM:7163548 6540 1.616 - - - - - 0.788 - 0.828 -
76. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.614 - - - - - 0.898 - 0.716 - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
77. nfya ENSDARG00000042004, ENSDARG00000114231 6606 1.613 - - - - - 0.849 0.764 - - nuclear transcription factor Y, alpha [Source:ZFIN;Acc:ZDB-GENE-010501-1]
78. ARHGAP22 ENSDARG00000076434 1406 1.613 0.708 - - - - 0.905 - - - Rho GTPase activating protein 22 [Source:HGNC Symbol;Acc:HGNC:30320]
79. tfdp2 ENSDARG00000042835 1985 1.609 - - - 0.708 - 0.901 - - - transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
80. hnrnpab hnrnpab 72354 1.609 - - - - - 0.884 - 0.725 -
81. bri3bp ENSDARG00000010108 6295 1.608 - - - - - 0.891 - 0.717 - bri3 binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-5254]
82. scrt1a ENSDARG00000100821 2687 1.606 - - - 0.777 - 0.829 - - - scratch family zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-080219-30]
83. hoxb1b ENSDARG00000054033, ENSDARG00000112663 1967 1.602 0.733 - - - - 0.869 - - - homeobox B1b [Source:ZFIN;Acc:ZDB-GENE-980526-290]
84. rufy3 ENSDARG00000029692 3031 1.601 0.758 - - - - 0.843 - - - RUN and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-58]
85. nbeaa ENSDARG00000070080 862 1.6 0.722 - - - - 0.878 - - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
86. smarca5 ENSDARG00000052348 15433 1.594 - - 0.735 - - 0.859 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
87. basp1 ENSDARG00000053358, ENSDARG00000110677 2590 1.594 - - - - - 0.829 0.765 - - brain abundant, membrane attached signal protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-158]
88. cspg5a ENSDARG00000069981 1699 1.593 - - - 0.819 - 0.774 - - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
89. rrm1 ENSDARG00000014017 7296 1.592 - - - 0.816 - - - 0.776 - ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
90. celf2 ENSDARG00000002131, ENSDARG00000110267 15605 1.59 - - - - - - - 0.736 0.854 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
91. eno2 ENSDARG00000014287 2162 1.59 - - - - - 0.864 - - 0.726 enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
92. zc4h2 ENSDARG00000015314, ENSDARG00000112180 5141 1.587 - - - - - 0.803 - 0.784 - zinc finger, C4H2 domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-2207]
93. dbx1a ENSDARG00000086393 3161 1.583 - - - 0.741 - 0.842 - - - developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
94. st18 663 1.582 - - - - - 0.870 - 0.712 - suppression of tumorigenicity 18, zinc finger
95. ENDOD1_5 ENDOD1_5 8723 1.58 - - - 0.782 - 0.798 - - -
96. lypla2 ENSDARG00000053656 8971 1.579 - - - - - 0.832 - 0.747 - lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
97. setbp1 ENSDARG00000093799 4499 1.579 - - - 0.753 - 0.826 - - - SET binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060526-72]
98. nucks1a ENSDARG00000078473 28285 1.578 - - - - - 0.874 - - 0.704 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
99. vdac1 ENSDARG00000045132 8051 1.577 0.720 - - - - 0.857 - - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
100. hnrnpa0a ENSDARG00000089302 45675 1.574 0.721 - - - - - - 0.853 - heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]

There are 1372 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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