Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for nkx6.1

Gene Name Gene ID Reads Annotation
nkx6.1 ENSDARG00000022569 3779 NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]










Genes with expression patterns similar to nkx6.1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nkx6.1 ENSDARG00000022569 3779 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
2. ADAMTS3 ENSDARG00000060127 2839 3.653 0.905 0.899 - - - 0.885 0.964 - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
3. olig2 ENSDARG00000040946 1405 3.605 0.920 0.794 - - - 0.945 0.946 - - oligodendrocyte lineage transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4013]
4. mnx2a ENSDARG00000042106 939 3.59 0.943 0.803 - - - 0.861 0.983 - - motor neuron and pancreas homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040415-1]
5. SLC5A7 SLC5A7 453 3.581 0.896 0.894 - - - 0.926 0.865 - -
6. pkd2l1 ENSDARG00000022503 372 3.531 0.940 0.712 - - - 0.948 0.931 - - polycystic kidney disease 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-030616-558]
7. nkx2.2a ENSDARG00000053298 747 3.404 0.809 0.747 - - - 0.991 0.857 - - NK2 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-403]
8. sst1.1 ENSDARG00000040799 677 3.404 0.836 0.703 - - - 0.948 0.917 - - somatostatin 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4743]
9. urp1 ENSDARG00000093493, ENSDARG00000109394, ENSDARG00000114654 637 3.395 0.865 0.897 - - - 0.719 0.914 - - urotensin-related peptide 1 [Source:ZFIN;Acc:ZDB-GENE-100922-138]
10. CU928222.1 ENSDARG00000097436 1662 3.384 0.727 0.886 - - - 0.808 0.963 - -
11. nkx2.9 ENSDARG00000020332 357 3.381 0.917 0.753 - - - 0.848 0.863 - - NK2 transcription factor related, locus 9 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-4340]
12. SSX2IP SSX2IP 316 3.358 0.710 0.790 - - - 0.884 0.974 - -
13. wnt4b ENSDARG00000040159, ENSDARG00000115606 490 3.349 0.786 0.804 - - - 0.853 0.906 - - wingless-type MMTV integration site family, member 4b [Source:ZFIN;Acc:ZDB-GENE-000411-1]
14. scg2a 800 3.317 0.755 0.870 - - - 0.731 0.961 - - secretogranin II (chromogranin C) a
15. im:7162084 im:7162084 665 3.301 0.904 - - - - 0.791 0.898 0.708 -
16. urp2 ENSDARG00000067781 85 3.286 0.788 0.808 - - - 0.892 0.798 - - urotensin II-related peptide [Source:ZFIN;Acc:ZDB-GENE-110718-3]
17. nes ENSDARG00000088805 2710 3.205 - 0.835 - - - 0.705 0.964 0.701 - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
18. calca ENSDARG00000056590 150 3.202 0.731 0.816 - - - 0.758 0.897 - - calcitonin/calcitonin-related polypeptide, alpha [Source:ZFIN;Acc:ZDB-GENE-040718-173]
19. si:ch73-265d7.2 ENSDARG00000116713 2142 2.875 0.917 - - - - 0.972 0.986 - - si:ch73-265d7.2 [Source:ZFIN;Acc:ZDB-GENE-100922-146]
20. zgc:113531 ENSDARG00000038794 2063 2.795 0.974 - - - - 0.844 0.977 - - zgc:113531 [Source:ZFIN;Acc:ZDB-GENE-050320-52]
21. nkx6.2 ENSDARG00000104735 5081 2.737 0.889 - - - - 0.935 0.913 - - NK6 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-070626-1]
22. hectd2 ENSDARG00000061194 559 2.658 0.864 - - - - 0.843 0.951 - - HECT domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100405-3]
23. rhbdl3 ENSDARG00000105190, ENSDARG00000112687, ENSDARG00000116222 977 2.655 - 0.914 - - - 0.789 0.952 - - rhomboid, veinlet-like 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050417-2]
24. insm1a ENSDARG00000091756 1838 2.649 0.882 - - 0.811 - - 0.956 - - insulinoma-associated 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1810]
25. ascl1a ENSDARG00000038386 1290 2.646 - 0.825 - - - 0.925 0.896 - - achaete-scute family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-90]
26. dbx2 2971 2.607 - 0.778 - - 0.973 - 0.856 - - developing brain homeobox 2
27. BX511121.1 ENSDARG00000029997 1774 2.599 0.897 - - - - 0.728 0.974 - -
28. crb1 ENSDARG00000100506, ENSDARG00000110621 373 2.595 0.947 0.749 - - - - 0.899 - - crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
29. epha3l epha3l 1441 2.583 0.845 0.811 - - - - 0.927 - -
30. CABZ01029738.1 CABZ01029738.1 327 2.582 - 0.790 - - - 0.849 0.943 - -
31. nkx2.2b ENSDARG00000101549 266 2.578 0.810 - - - - 0.943 0.825 - - NK2 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-050217-3]
32. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 2.566 - 0.908 - 0.771 - - 0.887 - - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
33. ek1 ENSDARG00000020080 742 2.558 0.881 0.779 - - - - 0.898 - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
34. mnx2b ENSDARG00000030350 484 2.552 0.865 0.709 - - - - 0.978 - - motor neuron and pancreas homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-040415-2]
35. clstn1 ENSDARG00000031720 5286 2.539 0.721 - - - 0.908 - 0.910 - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
36. atp1b4 ENSDARG00000053262 1337 2.532 0.760 0.796 - - - - 0.976 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
37. pcdh1gc5 ENSDARG00000104826 10052 2.53 0.726 0.861 - - - - 0.943 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
38. slc18a3a ENSDARG00000006356 1285 2.529 0.716 0.890 - - - - 0.923 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
39. pkd1b ENSDARG00000033029 461 2.52 0.748 - - - - 0.835 0.937 - - polycystic kidney disease 1b [Source:ZFIN;Acc:ZDB-GENE-100707-2]
40. myt1b ENSDARG00000102879 5411 2.519 0.745 0.858 - - - - 0.916 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
41. st18 663 2.517 - 0.799 - 0.757 - - 0.961 - - suppression of tumorigenicity 18, zinc finger
42. neurod neurod 1189 2.517 - 0.753 - - - 0.922 0.842 - -
43. CHL1 CHL1 1553 2.511 0.745 0.925 - - - - 0.841 - -
44. dla ENSDARG00000010791 9281 2.51 0.707 0.864 - - - - 0.939 - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
45. gad2 ENSDARG00000015537 724 2.503 0.899 0.735 - - - - 0.869 - - glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
46. ntn1a ENSDARG00000105112, ENSDARG00000111684 2553 2.502 0.793 - - - - 0.796 0.913 - - netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
47. kif5c ENSDARG00000076027 424 2.494 0.872 - - - - 0.772 0.850 - - kinesin family member 5C [Source:ZFIN;Acc:ZDB-GENE-081105-14]
48. CLIP3 ENSDARG00000054456 734 2.49 - 0.817 - 0.751 - - 0.922 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
49. sox1a ENSDARG00000069866, ENSDARG00000110682, ENSDARG00000114571 576 2.488 - 0.883 - - - 0.722 0.883 - - SRY (sex determining region Y)-box 1a [Source:ZFIN;Acc:ZDB-GENE-040718-186]
50. C2CD4A ENSDARG00000061416 61 2.488 0.820 - - - - 0.751 0.917 - - C2 calcium dependent domain containing 4A [Source:ZFIN;Acc:ZDB-GENE-030131-5712]
51. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.483 0.814 0.777 - - - - 0.892 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
52. si:ch73-21g5.7 ENSDARG00000093156 9412 2.477 0.703 0.841 - - - - 0.933 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
53. mapk12b ENSDARG00000006409 2246 2.474 - 0.848 - 0.717 - - 0.909 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
54. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 2.467 - 0.771 - 0.706 - - 0.990 - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
55. ppm1la ENSDARG00000063218 2142 2.459 - 0.765 - - 0.978 - 0.716 - - protein phosphatase, Mg2+/Mn2+ dependent, 1La [Source:ZFIN;Acc:ZDB-GENE-061103-118]
56. prdm8 ENSDARG00000025017 370 2.448 0.732 - - - - 0.825 0.891 - - PR domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2747]
57. cdkl1 ENSDARG00000017329 3345 2.446 0.816 - - - - 0.780 0.850 - - cyclin-dependent kinase-like 1 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-040808-34]
58. hnrnpa3 ENSDARG00000059351 453 2.445 0.824 - - - - 0.836 0.785 - - heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
59. gad1b ENSDARG00000027419 440 2.443 0.780 - - - - 0.737 0.926 - - glutamate decarboxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030909-3]
60. unc119b ENSDARG00000044362 1528 2.436 0.723 - - 0.751 - - 0.962 - - unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]
61. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 2.43 - 0.825 - 0.760 0.845 - - - - POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
62. elavl3 ENSDARG00000014420 8644 2.427 - - - 0.730 0.745 - 0.952 - - ELAV like neuron-specific RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-980526-76]
63. her13 ENSDARG00000007097 2000 2.418 0.741 0.727 - - - - 0.950 - - hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]
64. sema3c ENSDARG00000034300 881 2.406 0.761 - - - - 0.788 0.857 - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:ZFIN;Acc:ZDB-GENE-050513-5]
65. INSM2 ENSDARG00000020655 122 2.405 0.787 - - - - 0.756 0.862 - - INSM transcriptional repressor 2 [Source:HGNC Symbol;Acc:HGNC:17539]
66. cyr61l2 ENSDARG00000099985 725 2.363 - 0.725 - - - 0.821 0.817 - - cysteine-rich, angiogenic inducer, 61 like 2 [Source:ZFIN;Acc:ZDB-GENE-060404-5]
67. si:ch211-247j9.1 ENSDARG00000079283 217 2.362 0.814 0.765 - - - - 0.783 - - si:ch211-247j9.1 [Source:ZFIN;Acc:ZDB-GENE-091204-212]
68. tmeff1b ENSDARG00000056740 11253 2.359 - - - 0.768 0.805 - 0.786 - - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
69. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 2.348 - - - - 0.818 0.710 0.820 - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
70. shhb ENSDARG00000038867 338 2.347 0.734 0.765 - - - - 0.848 - - sonic hedgehog b [Source:ZFIN;Acc:ZDB-GENE-980526-41]
71. NPPC ENSDARG00000068126 45 2.347 0.769 - - - - 0.822 0.756 - - natriuretic peptide C [Source:ZFIN;Acc:ZDB-GENE-070705-24]
72. syngr3a ENSDARG00000014871 405 2.321 - 0.710 - 0.714 - - 0.897 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
73. ntn1b ENSDARG00000022531 248 2.316 0.722 0.842 - - - - 0.752 - - netrin 1b [Source:ZFIN;Acc:ZDB-GENE-990415-168]
74. espn ENSDARG00000076414 343 2.315 0.888 - - - - 0.708 0.719 - - espin [Source:ZFIN;Acc:ZDB-GENE-081105-173]
75. CU658147.1 CU658147.1 69 2.308 0.746 0.709 - - - - 0.853 - -
76. fyna ENSDARG00000011370 1679 2.296 0.750 0.701 - - - - 0.845 - - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
77. chodl ENSDARG00000034528, ENSDARG00000109583, ENSDARG00000111154 1306 2.285 0.718 - - - - 0.828 0.739 - - chondrolectin [Source:ZFIN;Acc:ZDB-GENE-050417-36]
78. meis2b ENSDARG00000077840 5166 2.283 - 0.726 - 0.773 - - 0.784 - - Meis homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-000210-23]
79. sall3b ENSDARG00000057586 982 2.279 0.705 0.720 - - - - 0.854 - - spalt-like transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9140]
80. ache ENSDARG00000031796 1985 2.27 - 0.797 - - - 0.709 0.764 - - acetylcholinesterase [Source:ZFIN;Acc:ZDB-GENE-010906-1]
81. cbx1b ENSDARG00000054442 1206 2.241 0.799 - - 0.705 - - 0.737 - - chromobox homolog 1b (HP1 beta homolog Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040625-68]
82. MSMP ENSDARG00000105581 254 2.23 0.722 - - - - 0.752 0.756 - - microseminoprotein, prostate associated [Source:HGNC Symbol;Acc:HGNC:29663]
83. ank2b ENSDARG00000043313 3065 2.228 0.700 0.783 - - - - 0.745 - - ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
84. ptch1 ENSDARG00000016404, ENSDARG00000095859, ENSDARG00000116142 1113 2.228 0.750 - - 0.772 - - 0.706 - - patched 1 [Source:ZFIN;Acc:ZDB-GENE-980526-196]
85. mb21d2a mb21d2a 421 2.219 - 0.710 - 0.749 - - 0.760 - -
86. C7H4orf48 C7H4orf48 1455 1.895 - - - - 0.971 - 0.924 - -
87. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 1.886 0.942 - - - - - 0.944 - - LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
88. plp1a ENSDARG00000103732 3544 1.882 - - - - 0.942 - 0.940 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
89. sox2 ENSDARG00000070913 2763 1.879 - 0.914 - - - - 0.965 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
90. gpr98 gpr98 717 1.877 - - - - - 0.926 0.951 - -
91. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 1.876 - - - - 0.963 - 0.913 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
92. neurod4 ENSDARG00000003469, ENSDARG00000117149 1732 1.869 - 0.911 - - - - 0.958 - - neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GENE-030730-1]
93. ptprnb ENSDARG00000077047 2743 1.83 - 0.918 - - - - 0.912 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
94. her15.2 her15.2 1701 1.826 - 0.847 - - - - 0.979 - -
95. nadl1.1 1200 1.823 - 0.908 - - - - 0.915 - - neural adhesion molecule L1.1, transcript variant X1
96. zic4 ENSDARG00000031307 1228 1.818 - 0.908 - - - - 0.910 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
97. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 1.817 - 0.847 - - - - 0.970 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
98. clu ENSDARG00000010434 498 1.814 - 0.922 - - - - 0.892 - - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
99. sox21b ENSDARG00000008540 1460 1.81 - 0.883 - - - - 0.927 - - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
100. si:dkey-169l5.3 si:dkey-169l5.3 239 1.808 - - - - - 0.889 0.919 - -

There are 2080 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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