Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for nkx3.3

Gene Name Gene ID Reads Annotation
nkx3.3 ENSDARG00000069327, ENSDARG00000110589 66 NK3 homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-050306-27]










Genes with expression patterns similar to nkx3.3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nkx3.3 ENSDARG00000069327, ENSDARG00000110589 66 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 NK3 homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-050306-27]
2. rhobtb2b ENSDARG00000089340 4 2 - - - - - 1.000 1.000 - - Rho related BTB domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-071125-1]
3. themis ENSDARG00000010619 5 2 - - - - - 1.000 1.000 - - thymocyte selection associated [Source:ZFIN;Acc:ZDB-GENE-041008-160]
4. cep68 ENSDARG00000039411 30 1.943 - - - - - 0.943 1.000 - - centrosomal protein 68 [Source:ZFIN;Acc:ZDB-GENE-030616-565]
5. chmp6b ENSDARG00000102024 37 1.931 - - - - - 0.931 1.000 - - charged multivesicular body protein 6b [Source:ZFIN;Acc:ZDB-GENE-040924-2]
6. FHDC1_3 FHDC1_3 66 1.917 - - - - - 0.917 1.000 - -
7. si:ch211-244h4.2 si:ch211-244h4.2 1 1.887 - - - - 0.887 - 1.000 - -
8. zgc:171704 ENSDARG00000018048 14 1.823 - - - - - 0.823 1.000 - - zgc:171704 [Source:ZFIN;Acc:ZDB-GENE-070820-16]
9. RDM1 RDM1 28 1.814 - - - - - 0.814 1.000 - -
10. si:dkeyp-87a6.2 ENSDARG00000093322 18 1.799 - - - - 0.799 - 1.000 - - si:dkeyp-87a6.2 [Source:ZFIN;Acc:ZDB-GENE-091118-57]
11. arhgap15 ENSDARG00000062349 28 1.795 - - 0.859 - - 0.936 - - - Rho GTPase activating protein 15 [Source:ZFIN;Acc:ZDB-GENE-070912-314]
12. lctlb ENSDARG00000016337 35 1.741 - - 0.741 - - - 1.000 - - lactase-like b [Source:ZFIN;Acc:ZDB-GENE-060503-93]
13. zgc:112242 11 1.738 - - 0.738 - - - 1.000 - - zgc:112242
14. LRRC2 LRRC2 23 1.719 - - - - 0.719 - 1.000 - -
15. si:dkey-177p2.15p si:dkey-177p2.15p 20 1.714 - - - - 0.921 0.793 - - -
16. SUN2 SUN2 86 1.689 - - - - - 0.777 0.912 - -
17. hsd11b2 ENSDARG00000001975 245 1.619 - - - 0.748 - - 0.871 - - hydroxysteroid (11-beta) dehydrogenase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6030]
18. arvcfa ENSDARG00000074329 53 1.581 - - - - 0.852 - 0.729 - - ARVCF, delta catenin family member a [Source:ZFIN;Acc:ZDB-GENE-091113-43]
19. CR391961.2 CR391961.2 107 1.561 - - - - - 0.784 0.777 - -
20. si:ch211-155o21.4 ENSDARG00000096567 25 1.559 - - 0.706 - - 0.853 - - - si:ch211-155o21.4 [Source:ZFIN;Acc:ZDB-GENE-121214-169]
21. dnah5 ENSDARG00000087373 168 1.481 - - - 0.726 - - 0.755 - - dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
22. ENSDARG00000029117 ENSDARG00000029117 80 1 - - - - - - 1.000 - -
23. kcnh1a ENSDARG00000024167 9 1 - - - - - - 1.000 - - potassium voltage-gated channel, subfamily H (eag-related), member 1a [Source:ZFIN;Acc:ZDB-GENE-061226-1]
24. plac8l1 ENSDARG00000069031 161 1 - - - - - - 1.000 - - PLAC8-like 1 [Source:ZFIN;Acc:ZDB-GENE-091204-165]
25. si:dkey-85k15.4 ENSDARG00000095047 25 1 - - - - - - 1.000 - - si:dkey-85k15.4 [Source:ZFIN;Acc:ZDB-GENE-100922-242]
26. tuba7l ENSDARG00000104643 33 1 - - - - - - 1.000 - - tubulin, alpha 7 like [Source:ZFIN;Acc:ZDB-GENE-040704-78]
27. BX323854.4 BX323854.4 3 1 - - - - - 1.000 - - -
28. AL954132.1 AL954132.1 1 1 - - - - - - 1.000 - -
29. cysltr1 ENSDARG00000058246, ENSDARG00000116295 25 1 - - - - - - 1.000 - - cysteinyl leukotriene receptor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-250]
30. irf10 ENSDARG00000027658 7 1 - - - - - - 1.000 - - interferon regulatory factor 10 [Source:ZFIN;Acc:ZDB-GENE-040426-2084]
31. ms4a17a.2 ENSDARG00000105674 32 1 - - - - - - 1.000 - - membrane-spanning 4-domains, subfamily A, member 17a.2 [Source:ZFIN;Acc:ZDB-GENE-070705-367]
32. si:dkey-119p2.1 si:dkey-119p2.1 1 1 - - - - - - 1.000 - -
33. vtg3 ENSDARG00000016448 8 1 - - - - - 1.000 - - - vitellogenin 3, phosvitinless [Source:ZFIN;Acc:ZDB-GENE-991019-2]
34. CT030712.1 ENSDARG00000044355 83 1 - - - - - - 1.000 - - uncharacterized LOC100534830 [Source:NCBI gene;Acc:100534830]
35. syndig1l ENSDARG00000042390, ENSDARG00000113400 17 1 - - - - - 1.000 - - - synapse differentiation inducing 1-like [Source:ZFIN;Acc:ZDB-GENE-041001-116]
36. RBBP6_10 RBBP6_10 0 1 - - - - - - 1.000 - -
37. manba ENSDARG00000008238 25 1 - - - - - - 1.000 - - mannosidase, beta A, lysosomal [Source:ZFIN;Acc:ZDB-GENE-040426-721]
38. m17 ENSDARG00000035435 28 1 - - - - - 1.000 - - - IL-6 subfamily cytokine M17 [Source:ZFIN;Acc:ZDB-GENE-060526-368]
39. il12bb ENSDARG00000054542 6 1 - - - - - 1.000 - - - interleukin 12B, b [Source:ZFIN;Acc:ZDB-GENE-030131-7937]
40. crfb16 ENSDARG00000075181 40 1 - - - - - - 1.000 - - cytokine receptor family member B16 [Source:ZFIN;Acc:ZDB-GENE-071120-9]
41. pnp6 ENSDARG00000040942, ENSDARG00000114753 10 1 - - - - - - 1.000 - - purine nucleoside phosphorylase 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1800]
42. abcc12 ENSDARG00000013050 27 1 - - - - - - 1.000 - - ATP-binding cassette, sub-family C (CFTR/MRP), member 12 [Source:ZFIN;Acc:ZDB-GENE-050517-25]
43. CU633479.6 ENSDARG00000116146 4 1 - - - - - - 1.000 - -
44. tph2 ENSDARG00000057239, ENSDARG00000109777 55 1 - - - - - - 1.000 - - tryptophan hydroxylase 2 (tryptophan 5-monooxygenase) [Source:ZFIN;Acc:ZDB-GENE-040624-4]
45. si:ch211-235f1.3 ENSDARG00000095179 27 1 - - - - - - 1.000 - - si:ch211-235f1.3 [Source:ZFIN;Acc:ZDB-GENE-091204-440]
46. si:dkey-114e9.1 si:dkey-114e9.1 233 1 - - - - - - 1.000 - -
47. pdk3a ENSDARG00000014527 15 1 - - - - - 1.000 - - - pyruvate dehydrogenase kinase, isozyme 3a [Source:ZFIN;Acc:ZDB-GENE-061220-3]
48. gcnt4b ENSDARG00000077550 2 1 - - - - - - 1.000 - - glucosaminyl (N-acetyl) transferase 4, core 2, b [Source:ZFIN;Acc:ZDB-GENE-091118-69]
49. zmat4b ENSDARG00000061419 7 1 - - - - - - 1.000 - - zinc finger, matrin-type 4b [Source:ZFIN;Acc:ZDB-GENE-091118-68]
50. snR50 snR50 1 1 - - - - - 1.000 - - -
51. si:dkey-30j10.5 ENSDARG00000093186 13 1 - - - - - - 1.000 - - si:dkey-30j10.5 [Source:ZFIN;Acc:ZDB-GENE-091118-81]
52. gp1bb ENSDARG00000074441 116 1 - - - - - 1.000 - - - glycoprotein Ib platelet subunit beta [Source:ZFIN;Acc:ZDB-GENE-081104-406]
53. zte25 zte25 29 1 - - - - - - 1.000 - -
54. zgc:194551 ENSDARG00000114948, ENSDARG00000115221 24 1 - - - - - - 1.000 - - zgc:194551 [Source:ZFIN;Acc:ZDB-GENE-030131-4878]
55. si:dkey-253d23.8 ENSDARG00000094427 26 1 - - - - - - 1.000 - - si:dkey-253d23.8 [Source:ZFIN;Acc:ZDB-GENE-050208-568]
56. med8 ENSDARG00000114425 7 1 - - - - - - 1.000 - - mediator complex subunit 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2091]
57. CR790369.2 CR790369.2 0 1 - - - - - - 1.000 - -
58. CABZ01080074.1 ENSDARG00000076371 0 1 - - - - - - 1.000 - - shroom family member 2b [Source:NCBI gene;Acc:556551]
59. BX511266.1 BX511266.1 21 1 - - - - - - 1.000 - -
60. TULP1 TULP1 50 1 - - - - - - 1.000 - -
61. zgc:113426 ENSDARG00000051793 37 1 - - - - - - 1.000 - - zgc:113426 [Source:ZFIN;Acc:ZDB-GENE-050913-149]
62. TSPAN1 ENSDARG00000052027 4 1 - - - - - 1.000 - - - tetraspanin 1 [Source:ZFIN;Acc:ZDB-GENE-070502-5]
63. syt6a ENSDARG00000076730 4 1 - - - - - 1.000 - - - synaptotagmin VIa [Source:ZFIN;Acc:ZDB-GENE-090601-2]
64. GMNC ENSDARG00000068719 28 1 - - - - - - 1.000 - - geminin coiled-coil domain containing [Source:ZFIN;Acc:ZDB-GENE-121211-1]
65. FAM188B2 4 1 - - - - - - 1.000 - - family with sequence similarity 188, member B2
66. si:ch211-191a16.3 si:ch211-191a16.3 31 1 - - - - - - 1.000 - -
67. ak7b ENSDARG00000017023 25 1 - - - - - - 1.000 - - adenylate kinase 7b [Source:ZFIN;Acc:ZDB-GENE-050309-170]
68. zgc:173577 ENSDARG00000098923 71 1 - - - - - - 1.000 - - zgc:173577 [Source:ZFIN;Acc:ZDB-GENE-071004-55]
69. opn4a ENSDARG00000022098, ENSDARG00000110010 3 1 - - - - - - 1.000 - - opsin 4a (melanopsin) [Source:ZFIN;Acc:ZDB-GENE-070111-2]
70. mipol1 ENSDARG00000104845 6 1 - - - - - - 1.000 - - mirror-image polydactyly 1 [Source:ZFIN;Acc:ZDB-GENE-030131-41]
71. sox11a ENSDARG00000077811 25 1 - - - - - 1.000 - - - SRY (sex determining region Y)-box 11a [Source:ZFIN;Acc:ZDB-GENE-980526-395]
72. dok1a ENSDARG00000078108 9 1 - - - - - 1.000 - - - docking protein 1a [Source:ZFIN;Acc:ZDB-GENE-080721-2]
73. zgc:136461 ENSDARG00000093844, ENSDARG00000114728 1 1 - - - - - - 1.000 - - zgc:136461 [Source:ZFIN;Acc:ZDB-GENE-060519-7]
74. ugt5d1 ENSDARG00000002394 5 1 - - - - - - 1.000 - - UDP glucuronosyltransferase 5 family, polypeptide D1 [Source:ZFIN;Acc:ZDB-GENE-091118-36]
75. slc25a19 ENSDARG00000100385 2 1 - - - - - 1.000 - - - solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 [Source:ZFIN;Acc:ZDB-GENE-050417-292]
76. si:dkey-16p6.1 ENSDARG00000088245, ENSDARG00000089179, ENSDARG00000090033, ENSDARG00000090192, ENSDARG00000090734, ENSDARG00000091746, ENSDARG00000098189, ENSDARG00000098515, ENSDARG00000099262, ENSDARG00000100061, ENSDARG00000100164, ENSDARG00000101351, ENSDARG00000101689, ENSDARG00000101828, ENSDARG00000102212, ENSDARG00000104416, ENSDARG00000104897, ENSDARG00000105266, ENSDARG00000111518 0 1 - - - - - - 1.000 - - si:dkey-16p6.1 [Source:ZFIN;Acc:ZDB-GENE-081103-43]
77. si:dkey-267i17.3 si:dkey-267i17.3 4 1 - - - - - - 1.000 - -
78. CABZ01088134.1 ENSDARG00000033587 4 1 - - - - - - 1.000 - - enoyl-[acyl-carrier-protein] reductase, mitochondrial-like [Source:NCBI gene;Acc:101884755]
79. IQCG ENSDARG00000068678 77 1 - - - - - - 1.000 - - IQ motif containing G [Source:ZFIN;Acc:ZDB-GENE-050419-109]
80. amn ENSDARG00000062947 36 1 - - - - - - 1.000 - - amnion associated transmembrane protein [Source:ZFIN;Acc:ZDB-GENE-060810-59]
81. TESPA1 ENSDARG00000053311 29 1 - - - - - 1.000 - - - thymocyte expressed, positive selection associated 1 [Source:ZFIN;Acc:ZDB-GENE-120727-10]
82. si:dkey-26i13.6 ENSDARG00000092200 3 1 - - - - - - 1.000 - - si:dkey-26i13.6 [Source:ZFIN;Acc:ZDB-GENE-090312-165]
83. def8 ENSDARG00000068208 50 1 - - - - - - 1.000 - - differentially expressed in FDCP 8 homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-041114-96]
84. RBBP6_9 RBBP6_9 1 1 - - - - - - 1.000 - -
85. TRIM14_5 TRIM14_5 2 1 - - - - - - 1.000 - -
86. zgc:158432 ENSDARG00000067806, ENSDARG00000109239 4 1 - - - - - - 1.000 - - zgc:158432 [Source:ZFIN;Acc:ZDB-GENE-061201-57]
87. tpbgl ENSDARG00000114338 5 1 - - - - - - 1.000 - - trophoblast glycoprotein-like [Source:ZFIN;Acc:ZDB-GENE-120209-2]
88. si:dkey-28d5.2 si:dkey-28d5.2 2 1 - - - - - - 1.000 - -
89. zgc:92249 14 1 - - - - - - 1.000 - - zgc:92249
90. CELA1_2 CELA1_2 2 1 - - - - - 1.000 - - -
91. MAL2_1 MAL2_1 6 1 - - - - - - 1.000 - -
92. SLC7A8 SLC7A8 25 1 - - - - - - 1.000 - -
93. RNaseP_nuc_1 RNaseP_nuc_1 19 1 - - - - - - 1.000 - -
94. epha8 22 1 - - - - - - 1.000 - - eph receptor A8
95. si:dkey-112e17.1 ENSDARG00000093201 1 1 - - - - - 1.000 - - - si:dkey-112e17.1 [Source:ZFIN;Acc:ZDB-GENE-060526-193]
96. AP5Z1 ENSDARG00000078111 91 1 - - - - - - 1.000 - - adaptor related protein complex 5 subunit zeta 1 [Source:ZFIN;Acc:ZDB-GENE-120508-2]
97. fam154b fam154b 2 1 - - - - - - 1.000 - -
98. lyve1b ENSDARG00000062483 14 1 - - - - - - 1.000 - - lymphatic vessel endothelial hyaluronic receptor 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9516]
99. si:ch211-196g2.7 si:ch211-196g2.7 0 1 - - - - - - 1.000 - -
100. OVOL1 75 1 - - - - - - 1.000 - - ovo-like zinc finger 1, transcript variant X1

There are 801 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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