Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for nkx3.3

Gene Name Gene ID Reads Annotation
nkx3.3 ENSDARG00000069327, ENSDARG00000110589 66 NK3 homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-050306-27]










Genes with expression patterns similar to nkx3.3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nkx3.3 ENSDARG00000069327, ENSDARG00000110589 66 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 NK3 homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-050306-27]
2. themis ENSDARG00000010619 5 2 - - - - - 1.000 1.000 - - thymocyte selection associated [Source:ZFIN;Acc:ZDB-GENE-041008-160]
3. rhobtb2b ENSDARG00000089340 4 2 - - - - - 1.000 1.000 - - Rho related BTB domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-071125-1]
4. cep68 ENSDARG00000039411 30 1.943 - - - - - 0.943 1.000 - - centrosomal protein 68 [Source:ZFIN;Acc:ZDB-GENE-030616-565]
5. chmp6b ENSDARG00000102024 37 1.931 - - - - - 0.931 1.000 - - charged multivesicular body protein 6b [Source:ZFIN;Acc:ZDB-GENE-040924-2]
6. FHDC1_3 FHDC1_3 66 1.917 - - - - - 0.917 1.000 - -
7. si:ch211-244h4.2 si:ch211-244h4.2 1 1.887 - - - - 0.887 - 1.000 - -
8. zgc:171704 ENSDARG00000018048 14 1.823 - - - - - 0.823 1.000 - - zgc:171704 [Source:ZFIN;Acc:ZDB-GENE-070820-16]
9. RDM1 RDM1 28 1.814 - - - - - 0.814 1.000 - -
10. si:dkeyp-87a6.2 ENSDARG00000093322 18 1.799 - - - - 0.799 - 1.000 - - si:dkeyp-87a6.2 [Source:ZFIN;Acc:ZDB-GENE-091118-57]
11. arhgap15 ENSDARG00000062349 28 1.795 - - 0.859 - - 0.936 - - - Rho GTPase activating protein 15 [Source:ZFIN;Acc:ZDB-GENE-070912-314]
12. lctlb ENSDARG00000016337 35 1.741 - - 0.741 - - - 1.000 - - lactase-like b [Source:ZFIN;Acc:ZDB-GENE-060503-93]
13. zgc:112242 11 1.738 - - 0.738 - - - 1.000 - - zgc:112242
14. LRRC2 LRRC2 23 1.719 - - - - 0.719 - 1.000 - -
15. si:dkey-177p2.15p si:dkey-177p2.15p 20 1.714 - - - - 0.921 0.793 - - -
16. SUN2 SUN2 86 1.689 - - - - - 0.777 0.912 - -
17. hsd11b2 ENSDARG00000001975 245 1.619 - - - 0.748 - - 0.871 - - hydroxysteroid (11-beta) dehydrogenase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6030]
18. arvcfa ENSDARG00000074329 53 1.581 - - - - 0.852 - 0.729 - - ARVCF, delta catenin family member a [Source:ZFIN;Acc:ZDB-GENE-091113-43]
19. CR391961.2 CR391961.2 107 1.561 - - - - - 0.784 0.777 - -
20. si:ch211-155o21.4 ENSDARG00000096567 25 1.559 - - 0.706 - - 0.853 - - - si:ch211-155o21.4 [Source:ZFIN;Acc:ZDB-GENE-121214-169]
21. dnah5 ENSDARG00000087373 168 1.481 - - - 0.726 - - 0.755 - - dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
22. BX537350.1 BX537350.1 8 1 - - - - - - 1.000 - -
23. si:dkey-119g10.4 si:dkey-119g10.4 7 1 - - - - - 1.000 - - -
24. si:dkey-176g4.5 si:dkey-176g4.5 4 1 - - - - - - 1.000 - -
25. SLC4A5 9 1 - - - - - - 1.000 - - solute carrier family 4 (sodium bicarbonate cotransporter), member 5, transcript variant X7
26. fam166b ENSDARG00000100292 14 1 - - - - - 1.000 - - - family with sequence similarity 166, member B [Source:ZFIN;Acc:ZDB-GENE-070209-41]
27. mthfsd ENSDARG00000062042 34 1 - - - - - - 1.000 - - methenyltetrahydrofolate synthetase domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-3513]
28. DDO DDO 0 1 - - - - - - 1.000 - -
29. ENSDARG00000089100 ENSDARG00000089100 5 1 - - - - - - 1.000 - -
30. sema3h ENSDARG00000042616 75 1 - - - - - - 1.000 - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H [Source:ZFIN;Acc:ZDB-GENE-990715-8]
31. C1S_1 C1S_1 11 1 - - - - - - 1.000 - -
32. tmem178 ENSDARG00000020758 77 1 - - - - - - 1.000 - - transmembrane protein 178 [Source:ZFIN;Acc:ZDB-GENE-060929-756]
33. si:dkey-119g10.3 si:dkey-119g10.3 0 1 - - - - - - 1.000 - -
34. FP102169.1 ENSDARG00000110967 1 1 - - - - - - 1.000 - - secreted frizzled-related protein 5-like [Source:NCBI gene;Acc:101884738]
35. ftr58 ENSDARG00000071238 10 1 - - - - - 1.000 - - - finTRIM family, member 58 [Source:ZFIN;Acc:ZDB-GENE-080219-44]
36. wasa ENSDARG00000015149 26 1 - - - - - - 1.000 - - Wiskott-Aldrich syndrome (eczema-thrombocytopenia) a [Source:ZFIN;Acc:ZDB-GENE-081104-419]
37. flt3 ENSDARG00000058503 32 1 - - - - - - 1.000 - - fms-related tyrosine kinase 3 [Source:ZFIN;Acc:ZDB-GENE-050114-4]
38. UNC119 UNC119 104 1 - - - - - - 1.000 - -
39. foxi1 ENSDARG00000104566 176 1 - - - - - 1.000 - - - forkhead box i1 [Source:ZFIN;Acc:ZDB-GENE-030505-1]
40. CABZ01085054.1 CABZ01085054.1 20 1 - - - - - - 1.000 - -
41. CABZ01060813.1 CABZ01060813.1 12 1 - - - - - 1.000 - - -
42. retsatl ENSDARG00000034989 41 1 - - - - - - 1.000 - - retinol saturase (all-trans-retinol 13,14-reductase) like [Source:ZFIN;Acc:ZDB-GENE-051113-252]
43. BX640584.1 ENSDARG00000100855 1 1 - - - - - - 1.000 - -
44. si:dkey-66g10.2 ENSDARG00000092845 28 1 - - - - - - 1.000 - - si:dkey-66g10.2 [Source:ZFIN;Acc:ZDB-GENE-090313-321]
45. si:dkeyp-118h3.1 si:dkeyp-118h3.1 0 1 - - - - - - 1.000 - -
46. VWDE ENSDARG00000103443 10 1 - - - - - - 1.000 - - von Willebrand factor D and EGF domains [Source:ZFIN;Acc:ZDB-GENE-060929-1226]
47. si:ch211-219a15.3 ENSDARG00000087659 12 1 - - - - - 1.000 - - - si:ch211-219a15.3 [Source:ZFIN;Acc:ZDB-GENE-060503-214]
48. ccdc41 ccdc41 97 1 - - - - - 1.000 - - -
49. pde6b ENSDARG00000011671 44 1 - - - - - - 1.000 - - phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
50. tdrd5 ENSDARG00000071450 25 1 - - - - - - 1.000 - - tudor domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-050208-502]
51. ccdc147 ccdc147 39 1 - - - - - - 1.000 - -
52. star ENSDARG00000006137 149 1 - - - - - - 1.000 - - steroidogenic acute regulatory protein [Source:ZFIN;Acc:ZDB-GENE-001120-3]
53. si:dkey-1h24.6 ENSDARG00000092653 13 1 - - - - - - 1.000 - - si:dkey-1h24.6 [Source:ZFIN;Acc:ZDB-GENE-100922-103]
54. Telomerase-vert Telomerase-vert 8 1 - - - - - - 1.000 - -
55. CABZ01061549.1 CABZ01061549.1 17 1 - - - - - - 1.000 - -
56. BX649292.1 ENSDARG00000092686 1 1 - - - - - - 1.000 - -
57. slc7a9 ENSDARG00000005894 29 1 - - - - - - 1.000 - - solute carrier family 7 (amino acid transporter light chain, bo,+ system), member 9 [Source:ZFIN;Acc:ZDB-GENE-080116-2]
58. CMA1_8 CMA1_8 10 1 - - - - - 1.000 - - -
59. si:dkey-276l13.3 si:dkey-276l13.3 8 1 - - - - - - 1.000 - -
60. FOXO6_1 FOXO6_1 73 1 - - - - - - 1.000 - -
61. CABZ01079804.1 ENSDARG00000117619 1 1 - - - - - - 1.000 - -
62. CDK18 ENSDARG00000012204 5 1 - - - - - - 1.000 - - cyclin dependent kinase 18 [Source:HGNC Symbol;Acc:HGNC:8751]
63. ela2 ENSDARG00000056744, ENSDARG00000111667 73 1 - - - - - - 1.000 - - elastase 2 [Source:ZFIN;Acc:ZDB-GENE-041117-1]
64. CR354540.1 ENSDARG00000004051 10 1 - - - - - - 1.000 - - cytochrome P450, family 7, subfamily A, polypeptide 1b [Source:NCBI gene;Acc:559097]
65. nudt4b ENSDARG00000045878 10 1 - - - - - - 1.000 - - nudix (nucleoside diphosphate linked moiety X)-type motif 4b [Source:ZFIN;Acc:ZDB-GENE-040912-79]
66. si:ch211-202n12.5 si:ch211-202n12.5 19 1 - - - - - - 1.000 - -
67. pls1 ENSDARG00000039272 39 1 - - - - - - 1.000 - - plastin 1 (I isoform) [Source:ZFIN;Acc:ZDB-GENE-030131-6205]
68. MSH4 ENSDARG00000075826 37 1 - - - - - - 1.000 - - mutS homolog 4 [Source:ZFIN;Acc:ZDB-GENE-131121-643]
69. si:rp71-1f1.6 ENSDARG00000110278 0 1 - - - - - - 1.000 - - si:rp71-1f1.6 [Source:ZFIN;Acc:ZDB-GENE-040724-256]
70. zgc:152968 ENSDARG00000037002 6 1 - - - - - - 1.000 - - zgc:152968 [Source:ZFIN;Acc:ZDB-GENE-061013-448]
71. swsap1 ENSDARG00000093423 14 1 - - - - - - 1.000 - - SWIM-type zinc finger 7 associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-071116-2]
72. si:ch211-165l15.1 si:ch211-165l15.1 10 1 - - - - - - 1.000 - -
73. CABZ01038329.1 CABZ01038329.1 8 1 - - - - - - 1.000 - -
74. U6_18 U6_18 12 1 - - - - - - 1.000 - -
75. lim2.2 ENSDARG00000059015 11 1 - - - - - - 1.000 - - lens intrinsic membrane protein 2.2 [Source:ZFIN;Acc:ZDB-GENE-060124-1]
76. bckdhb ENSDARG00000014676 17 1 - - - - - - 1.000 - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030124-2]
77. BX284672.1 BX284672.1 11 1 - - - - - 1.000 - - -
78. si:ch211-139g16.8 ENSDARG00000093074 13 1 - - - - - - 1.000 - - si:ch211-139g16.8 [Source:ZFIN;Acc:ZDB-GENE-100922-126]
79. BICD1 BICD1 9 1 - - - - - 1.000 - - -
80. mocs1 ENSDARG00000078479 1 1 - - - - - - 1.000 - - molybdenum cofactor synthesis 1 [Source:ZFIN;Acc:ZDB-GENE-130215-1]
81. irf1b ENSDARG00000043249 30 1 - - - - - 1.000 - - - interferon regulatory factor 1b [Source:ZFIN;Acc:ZDB-GENE-041114-13]
82. si:dkey-14d8.19 si:dkey-14d8.19 12 1 - - - - - - 1.000 - -
83. prlrb ENSDARG00000045955 12 1 - - - - - - 1.000 - - prolactin receptor b [Source:ZFIN;Acc:ZDB-GENE-070705-155]
84. reep6 ENSDARG00000087349 0 1 - - - - - - 1.000 - - receptor accessory protein 6 [Source:ZFIN;Acc:ZDB-GENE-040912-98]
85. si:ch211-220i18.4 ENSDARG00000030262 10 1 - - - - - - 1.000 - - si:ch211-220i18.4 [Source:ZFIN;Acc:ZDB-GENE-090312-151]
86. ftr06 ENSDARG00000018506, ENSDARG00000053450 17 1 - - - - - 1.000 - - - finTRIM family, member 6 [Source:ZFIN;Acc:ZDB-GENE-070912-228]
87. URB1 ENSDARG00000060308 78 1 - - - - - 1.000 - - - URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5181]
88. CABZ01084273.1 CABZ01084273.1 16 1 - - - - - 1.000 - - -
89. tacr3l ENSDARG00000003054 10 1 - - - - - - 1.000 - - tachykinin receptor 3-like [Source:ZFIN;Acc:ZDB-GENE-061207-19]
90. CR356223.1 ENSDARG00000093865 1 1 - - - - - 1.000 - - -
91. bbs10 ENSDARG00000069515, ENSDARG00000110925 36 1 - - - - - - 1.000 - - Bardet-Biedl syndrome 10 [Source:ZFIN;Acc:ZDB-GENE-060503-355]
92. RBBP6_2 RBBP6_2 23 1 - - - - - - 1.000 - -
93. stx17 ENSDARG00000006869 24 1 - - - - - - 1.000 - - syntaxin 17 [Source:ZFIN;Acc:ZDB-GENE-041114-164]
94. zgc:113263 ENSDARG00000045842 51 1 - - - - - - 1.000 - - zgc:113263 [Source:ZFIN;Acc:ZDB-GENE-050306-34]
95. si:ch211-186e20.7 ENSDARG00000077960 1 1 - - - - - - 1.000 - - si:ch211-186e20.7 [Source:ZFIN;Acc:ZDB-GENE-110407-6]
96. taar20t ENSDARG00000095035 1 1 - - - - - - 1.000 - - trace amine associated receptor 20t [Source:ZFIN;Acc:ZDB-GENE-060414-18]
97. ccdc85a ENSDARG00000039497 24 1 - - - - - - 1.000 - - coiled-coil domain containing 85A [Source:ZFIN;Acc:ZDB-GENE-080220-55]
98. lrit1b ENSDARG00000099406 12 1 - - - - - - 1.000 - - leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b [Source:ZFIN;Acc:ZDB-GENE-060616-45]
99. sync ENSDARG00000035944 8 1 - - - - - - 1.000 - - syncoilin, intermediate filament protein [Source:ZFIN;Acc:ZDB-GENE-060503-747]
100. kcnh3 ENSDARG00000069560 4 1 - - - - - 1.000 - - - potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-23]

There are 801 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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