Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for nkx3.3

Gene Name Gene ID Reads Annotation
nkx3.3 ENSDARG00000069327, ENSDARG00000110589 66 NK3 homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-050306-27]










Genes with expression patterns similar to nkx3.3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nkx3.3 ENSDARG00000069327, ENSDARG00000110589 66 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 NK3 homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-050306-27]
2. themis ENSDARG00000010619 5 2 - - - - - 1.000 1.000 - - thymocyte selection associated [Source:ZFIN;Acc:ZDB-GENE-041008-160]
3. rhobtb2b ENSDARG00000089340 4 2 - - - - - 1.000 1.000 - - Rho related BTB domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-071125-1]
4. cep68 ENSDARG00000039411 30 1.943 - - - - - 0.943 1.000 - - centrosomal protein 68 [Source:ZFIN;Acc:ZDB-GENE-030616-565]
5. chmp6b ENSDARG00000102024 37 1.931 - - - - - 0.931 1.000 - - charged multivesicular body protein 6b [Source:ZFIN;Acc:ZDB-GENE-040924-2]
6. FHDC1_3 FHDC1_3 66 1.917 - - - - - 0.917 1.000 - -
7. si:ch211-244h4.2 si:ch211-244h4.2 1 1.887 - - - - 0.887 - 1.000 - -
8. zgc:171704 ENSDARG00000018048 14 1.823 - - - - - 0.823 1.000 - - zgc:171704 [Source:ZFIN;Acc:ZDB-GENE-070820-16]
9. RDM1 RDM1 28 1.814 - - - - - 0.814 1.000 - -
10. si:dkeyp-87a6.2 ENSDARG00000093322 18 1.799 - - - - 0.799 - 1.000 - - si:dkeyp-87a6.2 [Source:ZFIN;Acc:ZDB-GENE-091118-57]
11. arhgap15 ENSDARG00000062349 28 1.795 - - 0.859 - - 0.936 - - - Rho GTPase activating protein 15 [Source:ZFIN;Acc:ZDB-GENE-070912-314]
12. lctlb ENSDARG00000016337 35 1.741 - - 0.741 - - - 1.000 - - lactase-like b [Source:ZFIN;Acc:ZDB-GENE-060503-93]
13. zgc:112242 11 1.738 - - 0.738 - - - 1.000 - - zgc:112242
14. LRRC2 LRRC2 23 1.719 - - - - 0.719 - 1.000 - -
15. si:dkey-177p2.15p si:dkey-177p2.15p 20 1.714 - - - - 0.921 0.793 - - -
16. SUN2 SUN2 86 1.689 - - - - - 0.777 0.912 - -
17. hsd11b2 ENSDARG00000001975 245 1.619 - - - 0.748 - - 0.871 - - hydroxysteroid (11-beta) dehydrogenase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6030]
18. arvcfa ENSDARG00000074329 53 1.581 - - - - 0.852 - 0.729 - - ARVCF, delta catenin family member a [Source:ZFIN;Acc:ZDB-GENE-091113-43]
19. CR391961.2 CR391961.2 107 1.561 - - - - - 0.784 0.777 - -
20. si:ch211-155o21.4 ENSDARG00000096567 25 1.559 - - 0.706 - - 0.853 - - - si:ch211-155o21.4 [Source:ZFIN;Acc:ZDB-GENE-121214-169]
21. dnah5 ENSDARG00000087373 168 1.481 - - - 0.726 - - 0.755 - - dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
22. CT030712.1 ENSDARG00000044355 83 1 - - - - - - 1.000 - - uncharacterized LOC100534830 [Source:NCBI gene;Acc:100534830]
23. il34 ENSDARG00000091003 14 1 - - - - - - 1.000 - - interleukin 34 [Source:ZFIN;Acc:ZDB-GENE-050419-150]
24. FAM196A 82 1 - - - - - 1.000 - - - family with sequence similarity 196 member A
25. NOX4 3 1 - - - - - 1.000 - - - NADPH oxidase 4
26. CABZ01033205.2 CABZ01033205.2 5 1 - - - - - - 1.000 - -
27. BX088653.4 BX088653.4 0 1 - - - - - - 1.000 - -
28. bckdhb ENSDARG00000014676 17 1 - - - - - - 1.000 - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030124-2]
29. si:ch211-220i18.4 ENSDARG00000030262 10 1 - - - - - - 1.000 - - si:ch211-220i18.4 [Source:ZFIN;Acc:ZDB-GENE-090312-151]
30. mb21d1 ENSDARG00000021572 12 1 - - - - - - 1.000 - - Mab-21 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-23]
31. arsk ENSDARG00000059714, ENSDARG00000115105 31 1 - - - - - - 1.000 - - arylsulfatase family, member K [Source:ZFIN;Acc:ZDB-GENE-060929-332]
32. col17a1a ENSDARG00000069415 52 1 - - - - - - 1.000 - - collagen, type XVII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090313-107]
33. si:dkey-176g4.5 si:dkey-176g4.5 4 1 - - - - - - 1.000 - -
34. tpbgl ENSDARG00000114338 5 1 - - - - - - 1.000 - - trophoblast glycoprotein-like [Source:ZFIN;Acc:ZDB-GENE-120209-2]
35. si:dkey-30j10.5 ENSDARG00000093186 13 1 - - - - - - 1.000 - - si:dkey-30j10.5 [Source:ZFIN;Acc:ZDB-GENE-091118-81]
36. ela2 ENSDARG00000056744, ENSDARG00000111667 73 1 - - - - - - 1.000 - - elastase 2 [Source:ZFIN;Acc:ZDB-GENE-041117-1]
37. si:dkey-28d5.2 si:dkey-28d5.2 2 1 - - - - - - 1.000 - -
38. ak7b ENSDARG00000017023 25 1 - - - - - - 1.000 - - adenylate kinase 7b [Source:ZFIN;Acc:ZDB-GENE-050309-170]
39. grn1 ENSDARG00000089362 20 1 - - - - - - 1.000 - - granulin 1 [Source:ZFIN;Acc:ZDB-GENE-060103-1]
40. si:ch211-235f1.3 ENSDARG00000095179 27 1 - - - - - - 1.000 - - si:ch211-235f1.3 [Source:ZFIN;Acc:ZDB-GENE-091204-440]
41. cttnbp2nl cttnbp2nl 166 1 - - - - - - 1.000 - -
42. si:dkey-1h24.6 ENSDARG00000092653 13 1 - - - - - - 1.000 - - si:dkey-1h24.6 [Source:ZFIN;Acc:ZDB-GENE-100922-103]
43. CABZ01074298.1 ENSDARG00000087767 6 1 - - - - - - 1.000 - - uncharacterized LOC100334396 [Source:NCBI gene;Acc:100334396]
44. vax1 ENSDARG00000021916, ENSDARG00000114230 152 1 - - - - - - 1.000 - - ventral anterior homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030904-9]
45. tph2 ENSDARG00000057239, ENSDARG00000109777 55 1 - - - - - - 1.000 - - tryptophan hydroxylase 2 (tryptophan 5-monooxygenase) [Source:ZFIN;Acc:ZDB-GENE-040624-4]
46. zgc:172271 ENSDARG00000013240 2 1 - - - - - - 1.000 - - zgc:172271 [Source:ZFIN;Acc:ZDB-GENE-080204-110]
47. RBBP6_10 RBBP6_10 0 1 - - - - - - 1.000 - -
48. retsatl ENSDARG00000034989 41 1 - - - - - - 1.000 - - retinol saturase (all-trans-retinol 13,14-reductase) like [Source:ZFIN;Acc:ZDB-GENE-051113-252]
49. pdk3a ENSDARG00000014527 15 1 - - - - - 1.000 - - - pyruvate dehydrogenase kinase, isozyme 3a [Source:ZFIN;Acc:ZDB-GENE-061220-3]
50. si:ch211-125e6.12 ENSDARG00000092090 3 1 - - - - - 1.000 - - - si:ch211-125e6.12 [Source:ZFIN;Acc:ZDB-GENE-070912-36]
51. si:dkey-66g10.2 ENSDARG00000092845 28 1 - - - - - - 1.000 - - si:dkey-66g10.2 [Source:ZFIN;Acc:ZDB-GENE-090313-321]
52. si:dkey-220o21.3 ENSDARG00000103079 1 1 - - - - - - 1.000 - - si:dkey-220o21.3 [Source:ZFIN;Acc:ZDB-GENE-110914-75]
53. opn4a ENSDARG00000022098, ENSDARG00000110010 3 1 - - - - - - 1.000 - - opsin 4a (melanopsin) [Source:ZFIN;Acc:ZDB-GENE-070111-2]
54. U6_18 U6_18 12 1 - - - - - - 1.000 - -
55. il17c ENSDARG00000057180, ENSDARG00000109701 3 1 - - - - - 1.000 - - - interleukin 17c [Source:ZFIN;Acc:ZDB-GENE-061031-5]
56. si:ch211-219a15.3 ENSDARG00000087659 12 1 - - - - - 1.000 - - - si:ch211-219a15.3 [Source:ZFIN;Acc:ZDB-GENE-060503-214]
57. C12H16orf93 C12H16orf93 1 1 - - - - - 1.000 - - -
58. CABZ01060813.1 CABZ01060813.1 12 1 - - - - - 1.000 - - -
59. vtg3 ENSDARG00000016448 8 1 - - - - - 1.000 - - - vitellogenin 3, phosvitinless [Source:ZFIN;Acc:ZDB-GENE-991019-2]
60. pigf ENSDARG00000032780 7 1 - - - - - 1.000 - - - phosphatidylinositol glycan anchor biosynthesis, class F [Source:ZFIN;Acc:ZDB-GENE-040426-1801]
61. zgc:92249 14 1 - - - - - - 1.000 - - zgc:92249
62. ELFN2 ELFN2 7 1 - - - - - - 1.000 - -
63. TGFBR2 TGFBR2 2 1 - - - - - 1.000 - - -
64. si:dkey-25o1.6 si:dkey-25o1.6 5 1 - - - - - - 1.000 - -
65. TESPA1 ENSDARG00000053311 29 1 - - - - - 1.000 - - - thymocyte expressed, positive selection associated 1 [Source:ZFIN;Acc:ZDB-GENE-120727-10]
66. CABZ01087853.1 CABZ01087853.1 3 1 - - - - - - 1.000 - -
67. sema3h ENSDARG00000042616 75 1 - - - - - - 1.000 - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H [Source:ZFIN;Acc:ZDB-GENE-990715-8]
68. FP102169.1 ENSDARG00000110967 1 1 - - - - - - 1.000 - - secreted frizzled-related protein 5-like [Source:NCBI gene;Acc:101884738]
69. FAM188B2 4 1 - - - - - - 1.000 - - family with sequence similarity 188, member B2
70. pls1 ENSDARG00000039272 39 1 - - - - - - 1.000 - - plastin 1 (I isoform) [Source:ZFIN;Acc:ZDB-GENE-030131-6205]
71. reep6 ENSDARG00000087349 0 1 - - - - - - 1.000 - - receptor accessory protein 6 [Source:ZFIN;Acc:ZDB-GENE-040912-98]
72. CR790369.2 CR790369.2 0 1 - - - - - - 1.000 - -
73. si:ch211-186e20.7 ENSDARG00000077960 1 1 - - - - - - 1.000 - - si:ch211-186e20.7 [Source:ZFIN;Acc:ZDB-GENE-110407-6]
74. BBX ENSDARG00000012699 79 1 - - - - - - 1.000 - - bobby sox homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-091204-306]
75. OVOL1 75 1 - - - - - - 1.000 - - ovo-like zinc finger 1, transcript variant X1
76. syt6a ENSDARG00000076730 4 1 - - - - - 1.000 - - - synaptotagmin VIa [Source:ZFIN;Acc:ZDB-GENE-090601-2]
77. crybb1l2 ENSDARG00000016793 723 1 - - - - - 1.000 - - - crystallin, beta B1, like 2 [Source:ZFIN;Acc:ZDB-GENE-070822-18]
78. ccdc14 ENSDARG00000098734 3 1 - - - - - 1.000 - - - coiled-coil domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-120215-134]
79. tmem174 ENSDARG00000035388 2 1 - - - - - - 1.000 - - transmembrane protein 174 [Source:ZFIN;Acc:ZDB-GENE-080819-2]
80. pde6b ENSDARG00000011671 44 1 - - - - - - 1.000 - - phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
81. lsm14b ENSDARG00000025386 23 1 - - - - - - 1.000 - - LSM family member 14B [Source:ZFIN;Acc:ZDB-GENE-040426-779]
82. irf1b ENSDARG00000043249 30 1 - - - - - 1.000 - - - interferon regulatory factor 1b [Source:ZFIN;Acc:ZDB-GENE-041114-13]
83. ccdc41 ccdc41 97 1 - - - - - 1.000 - - -
84. CR753886.1 ENSDARG00000090548 22 1 - - - - - - 1.000 - - prolactin releasing hormone 2 [Source:NCBI gene;Acc:793765]
85. manba ENSDARG00000008238 25 1 - - - - - - 1.000 - - mannosidase, beta A, lysosomal [Source:ZFIN;Acc:ZDB-GENE-040426-721]
86. zmat4b ENSDARG00000061419 7 1 - - - - - - 1.000 - - zinc finger, matrin-type 4b [Source:ZFIN;Acc:ZDB-GENE-091118-68]
87. zgc:153759 ENSDARG00000068969, ENSDARG00000092381 44 1 - - - - - 1.000 - - - zgc:153759 [Source:ZFIN;Acc:ZDB-GENE-060825-148]
88. PRTFDC1 ENSDARG00000011683 11 1 - - - - - 1.000 - - - phosphoribosyl transferase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-980526-324]
89. si:dkeyp-80d11.12 ENSDARG00000101728 4 1 - - - - - - 1.000 - - si:dkeyp-80d11.12 [Source:ZFIN;Acc:ZDB-GENE-070424-273]
90. CABZ01112210.1 CABZ01112210.1 48 1 - - - - - 1.000 - - -
91. si:ch211-280c20.7 si:ch211-280c20.7 1 1 - - - - - - 1.000 - -
92. URB1 ENSDARG00000060308 78 1 - - - - - 1.000 - - - URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5181]
93. TMEM121_1 TMEM121_1 22 1 - - - - - 1.000 - - -
94. HEXDC ENSDARG00000061216, ENSDARG00000116903 83 1 - - - - - - 1.000 - - hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing [Source:ZFIN;Acc:ZDB-GENE-060929-448]
95. BX640584.1 ENSDARG00000100855 1 1 - - - - - - 1.000 - -
96. RNF122 RNF122 29 1 - - - - - - 1.000 - -
97. tmprss13b ENSDARG00000077573 47 1 - - - - - - 1.000 - - transmembrane serine protease 13b [Source:ZFIN;Acc:ZDB-GENE-090309-2]
98. si:rp71-1f1.6 ENSDARG00000110278 0 1 - - - - - - 1.000 - - si:rp71-1f1.6 [Source:ZFIN;Acc:ZDB-GENE-040724-256]
99. cysltr1 ENSDARG00000058246, ENSDARG00000116295 25 1 - - - - - - 1.000 - - cysteinyl leukotriene receptor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-250]
100. si:dkey-114e9.1 si:dkey-114e9.1 233 1 - - - - - - 1.000 - -

There are 801 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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