Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for nkx3-1

Gene Name Gene ID Reads Annotation
nkx3-1 ENSDARG00000078280 1205 NK3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-081104-238]










Genes with expression patterns similar to nkx3-1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nkx3-1 ENSDARG00000078280 1205 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 NK3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-081104-238]
2. rnf14 ENSDARG00000043905 862 1.724 - - 0.984 - - 0.740 - - - ring finger protein 14 [Source:ZFIN;Acc:ZDB-GENE-040625-65]
3. eppk1 ENSDARG00000096359 4315 1.706 - 0.723 0.983 - - - - - - epiplakin 1 [Source:ZFIN;Acc:ZDB-GENE-030416-1]
4. elp6 ENSDARG00000060445, ENSDARG00000115612 458 1.693 - - 0.985 - - 0.708 - - - elongator acetyltransferase complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-060825-249]
5. si:dkey-240e12.6 ENSDARG00000110137 674 1.691 - 0.706 0.985 - - - - - - si:dkey-240e12.6 [Source:ZFIN;Acc:ZDB-GENE-050208-367]
6. egfl7 ENSDARG00000100657 776 1.581 0.779 0.802 - - - - - - - EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
7. coil ENSDARG00000040070 863 1.577 - 0.733 - - - 0.844 - - - coilin p80 [Source:ZFIN;Acc:ZDB-GENE-000330-8]
8. sgcg_1 ENSDARG00000038107 1998 1.556 0.716 0.840 - - - - - - - sarcoglycan, gamma [Source:ZFIN;Acc:ZDB-GENE-030724-2]
9. ck2a2a ck2a2a 1695 1.535 - 0.787 - - - - 0.748 - -
10. nsun5 ENSDARG00000043209 764 1.496 - - - - - 0.782 0.714 - - NOP2/Sun domain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2476]
11. eltd1 eltd1 295 1.494 - - - - - 0.733 0.761 - -
12. commd3 ENSDARG00000045402 1601 1.456 - 0.730 - - - 0.726 - - - COMM domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-041219-3]
13. SHISA2 1782 1.449 - 0.709 - - - 0.740 - - - shisa family member 2, transcript variant X2
14. BX294110.1 ENSDARG00000096875 1761 1.434 0.711 - - - - 0.723 - - -
15. si:dkey-67c22.2 ENSDARG00000055389 6410 1.413 - 0.711 0.702 - - - - - - si:dkey-67c22.2 [Source:ZFIN;Acc:ZDB-GENE-030131-5845]
16. fras1 ENSDARG00000054619, ENSDARG00000114204 4459 0.992 - - 0.992 - - - - - - Fraser extracellular matrix complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-060526-68]
17. cebpg ENSDARG00000036073 3791 0.989 - - 0.989 - - - - - - CCAAT enhancer binding protein gamma [Source:ZFIN;Acc:ZDB-GENE-020111-5]
18. itga3b ENSDARG00000012824 1872 0.988 - - 0.988 - - - - - - integrin, alpha 3b [Source:ZFIN;Acc:ZDB-GENE-050411-55]
19. nol12 ENSDARG00000038027 2288 0.987 - - 0.987 - - - - - - nucleolar protein 12 [Source:ZFIN;Acc:ZDB-GENE-040426-1035]
20. PLEKHH3 ENSDARG00000070174 2117 0.987 - - 0.987 - - - - - - pleckstrin homology, MyTH4 and FERM domain containing H3 [Source:HGNC Symbol;Acc:HGNC:26105]
21. dna2 ENSDARG00000078759 846 0.987 - - 0.987 - - - - - - DNA replication helicase/nuclease 2 [Source:ZFIN;Acc:ZDB-GENE-090313-71]
22. gstt1b ENSDARG00000017388, ENSDARG00000112401 2107 0.986 - - 0.986 - - - - - - glutathione S-transferase theta 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1491]
23. hdac10 ENSDARG00000086458 676 0.986 - - 0.986 - - - - - - histone deacetylase 10 [Source:ZFIN;Acc:ZDB-GENE-030131-5464]
24. cacnb2a ENSDARG00000099045 374 0.985 - - 0.985 - - - - - - calcium channel, voltage-dependent, beta 2a [Source:ZFIN;Acc:ZDB-GENE-080808-7]
25. zgc:171759 ENSDARG00000100259, ENSDARG00000109737, ENSDARG00000111964, ENSDARG00000114195, ENSDARG00000115938 340 0.985 - - 0.985 - - - - - - zgc:171759 [Source:ZFIN;Acc:ZDB-GENE-071004-32]
26. MYO1D ENSDARG00000036863 768 0.985 - - 0.985 - - - - - - myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
27. brip1 ENSDARG00000074410, ENSDARG00000113993 501 0.985 - - 0.985 - - - - - - BRCA1 interacting protein C-terminal helicase 1 [Source:ZFIN;Acc:ZDB-GENE-081107-11]
28. fryl ENSDARG00000040001 3256 0.985 - - 0.985 - - - - - - furry homolog, like [Source:ZFIN;Acc:ZDB-GENE-040914-58]
29. si:dkey-193c22.2 ENSDARG00000076735 2791 0.985 - - 0.985 - - - - - - si:dkey-193c22.2 [Source:ZFIN;Acc:ZDB-GENE-070705-337]
30. mrpl15 ENSDARG00000101306 2796 0.985 - - 0.985 - - - - - - mitochondrial ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-168]
31. TRIM35_10 TRIM35_10 484 0.985 - - 0.985 - - - - - -
32. faub ENSDARG00000043663, ENSDARG00000111416, ENSDARG00000113054 1451 0.984 - - 0.984 - - - - - - Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed b [Source:ZFIN;Acc:ZDB-GENE-050417-416]
33. laptm4a ENSDARG00000006397 1698 0.984 - - 0.984 - - - - - - lysosomal protein transmembrane 4 alpha [Source:ZFIN;Acc:ZDB-GENE-030131-1024]
34. gmpr2 ENSDARG00000061301 1132 0.984 - - 0.984 - - - - - - guanosine monophosphate reductase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1238]
35. FHAD1 ENSDARG00000056723, ENSDARG00000116072 406 0.984 - - 0.984 - - - - - - forkhead-associated (FHA) phosphopeptide binding domain 1 [Source:ZFIN;Acc:ZDB-GENE-041210-354]
36. nipal3 ENSDARG00000021147, ENSDARG00000109606 1058 0.984 - - 0.984 - - - - - - NIPA like domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040718-379]
37. ZBTB41 ENSDARG00000054984 464 0.984 - - 0.984 - - - - - - zinc finger and BTB domain containing 41 [Source:ZFIN;Acc:ZDB-GENE-130530-649]
38. wdr16 wdr16 532 0.984 - - 0.984 - - - - - -
39. lsm14aa ENSDARG00000006600 2298 0.984 - - 0.984 - - - - - - LSM14A mRNA processing body assembly factor a [Source:ZFIN;Acc:ZDB-GENE-040426-1567]
40. slc1a6 ENSDARG00000010096 764 0.984 - - 0.984 - - - - - - solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 [Source:ZFIN;Acc:ZDB-GENE-071004-45]
41. sesn3 ENSDARG00000015822 5328 0.983 - - 0.983 - - - - - - sestrin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2924]
42. mknk1 ENSDARG00000018411 749 0.983 - - 0.983 - - - - - - MAP kinase interacting serine/threonine kinase 1 [Source:ZFIN;Acc:ZDB-GENE-080220-11]
43. abhd4 ENSDARG00000102887 748 0.983 - - 0.983 - - - - - - abhydrolase domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-050417-83]
44. plxnc1 ENSDARG00000015278 501 0.983 - - 0.983 - - - - - - plexin C1 [Source:ZFIN;Acc:ZDB-GENE-030131-1620]
45. tlx2 ENSDARG00000011273 870 0.983 - - 0.983 - - - - - - T cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-020208-1]
46. CR954963.1 ENSDARG00000097153 1135 0.983 - - 0.983 - - - - - -
47. hadhaa ENSDARG00000057128 2179 0.983 - - 0.983 - - - - - - hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha a [Source:ZFIN;Acc:ZDB-GENE-031222-5]
48. myo1ea ENSDARG00000036179 891 0.983 - - 0.983 - - - - - - myosin IE, a [Source:ZFIN;Acc:ZDB-GENE-030131-5127]
49. ect2 ENSDARG00000007278 1193 0.982 - - 0.982 - - - - - - epithelial cell transforming 2 [Source:ZFIN;Acc:ZDB-GENE-040831-2]
50. gtf2e2 ENSDARG00000012672, ENSDARG00000109689, ENSDARG00000115211 1677 0.982 - - 0.982 - - - - - - general transcription factor IIE, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-030131-6794]
51. SIK1 ENSDARG00000058606 1982 0.982 - - 0.982 - - - - - - salt-inducible kinase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9446]
52. ppp1r14bb ENSDARG00000030161 2349 0.982 - - 0.982 - - - - - - protein phosphatase 1, regulatory (inhibitor) subunit 14Bb [Source:ZFIN;Acc:ZDB-GENE-030616-595]
53. dhdds ENSDARG00000039851 1135 0.982 - - 0.982 - - - - - - dehydrodolichyl diphosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2236]
54. itgb1bp1 ENSDARG00000007169 2723 0.981 - - 0.981 - - - - - - integrin beta 1 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-051113-264]
55. C11H12orf10 C11H12orf10 1305 0.981 - - 0.981 - - - - - -
56. mtx2 ENSDARG00000029415 2205 0.981 - - 0.981 - - - - - - metaxin 2 [Source:ZFIN;Acc:ZDB-GENE-021210-2]
57. aplnra ENSDARG00000002172 955 0.981 - - 0.981 - - - - - - apelin receptor a [Source:ZFIN;Acc:ZDB-GENE-060929-512]
58. six1b ENSDARG00000026473 1908 0.981 - - 0.981 - - - - - - SIX homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2308]
59. cry2a cry2a 2728 0.98 - - 0.980 - - - - - -
60. grpel2 ENSDARG00000069421 5673 0.98 - - 0.980 - - - - - - GrpE-like 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-091204-188]
61. arcn1b ENSDARG00000031214 4529 0.98 - - 0.980 - - - - - - archain 1b [Source:ZFIN;Acc:ZDB-GENE-040121-7]
62. daam1b ENSDARG00000009689 1520 0.98 - - 0.980 - - - - - - dishevelled associated activator of morphogenesis 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4212]
63. MALSU1 MALSU1 1251 0.98 - - 0.980 - - - - - -
64. mrps21 ENSDARG00000070985 3943 0.98 - - 0.980 - - - - - - mitochondrial ribosomal protein S21 [Source:ZFIN;Acc:ZDB-GENE-070615-13]
65. rbl1 ENSDARG00000008141 1217 0.979 - - 0.979 - - - - - - retinoblastoma-like 1 (p107) [Source:ZFIN;Acc:ZDB-GENE-030131-8179]
66. mrps18b ENSDARG00000007065 2121 0.979 - - 0.979 - - - - - - mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278]
67. TCEB3 2429 0.979 - - 0.979 - - - - - - transcription elongation factor B (SIII), polypeptide 3
68. foxa2 ENSDARG00000003411 2309 0.979 - - 0.979 - - - - - - forkhead box A2 [Source:ZFIN;Acc:ZDB-GENE-980526-404]
69. neu1 ENSDARG00000008832 2848 0.979 - - 0.979 - - - - - - neuraminidase 1 [Source:ZFIN;Acc:ZDB-GENE-060503-592]
70. celsr1b ENSDARG00000058259 1219 0.978 - - 0.978 - - - - - - cadherin EGF LAG seven-pass G-type receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050823-4]
71. sdhb ENSDARG00000075768 5493 0.978 - - 0.978 - - - - - - succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Source:ZFIN;Acc:ZDB-GENE-030131-8005]
72. asna1 ENSDARG00000018190 5253 0.978 - - 0.978 - - - - - - arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [Source:ZFIN;Acc:ZDB-GENE-040625-120]
73. tfap2a ENSDARG00000059279 3741 0.978 - - 0.978 - - - - - - transcription factor AP-2 alpha [Source:ZFIN;Acc:ZDB-GENE-011212-6]
74. f11r f11r 16668 0.977 - - 0.977 - - - - - -
75. elf2b ENSDARG00000079626, ENSDARG00000117064 3057 0.977 - - 0.977 - - - - - - E74-like factor 2b (ets domain transcription factor) [Source:ZFIN;Acc:ZDB-GENE-031215-1]
76. rps6ka3a ENSDARG00000035556, ENSDARG00000116641 3608 0.977 - - 0.977 - - - - - - ribosomal protein S6 kinase a, polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-030219-119]
77. nanos1 ENSDARG00000109337 2494 0.976 - - 0.976 - - - - - - nanos homolog 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1623]
78. PAQR4 PAQR4 2150 0.976 - - 0.976 - - - - - -
79. tmeff1b ENSDARG00000056740 11253 0.974 - - 0.974 - - - - - - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
80. C7H16orf87 C7H16orf87 5197 0.973 - - 0.973 - - - - - -
81. foxo3b ENSDARG00000042904 5046 0.973 - - 0.973 - - - - - - forkhead box O3b [Source:ZFIN;Acc:ZDB-GENE-990708-6]
82. CPT1A CPT1A 4004 0.972 - - 0.972 - - - - - -
83. yth2 yth2 3716 0.972 - - 0.972 - - - - - -
84. hectd1 ENSDARG00000054213 3501 0.971 - - 0.971 - - - - - - HECT domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030616-153]
85. plxnb1b ENSDARG00000017211 4676 0.971 - - 0.971 - - - - - - plexin b1b [Source:ZFIN;Acc:ZDB-GENE-090812-4]
86. tmem47 ENSDARG00000057322 4691 0.971 - - 0.971 - - - - - - transmembrane protein 47 [Source:ZFIN;Acc:ZDB-GENE-040426-2644]
87. hspa4a ENSDARG00000004754 3439 0.971 - - 0.971 - - - - - - heat shock protein 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2832]
88. PELP1 ENSDARG00000079313 5771 0.971 - - 0.971 - - - - - - proline, glutamate and leucine rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-140106-164]
89. mrps18a ENSDARG00000024465 5187 0.971 - - 0.971 - - - - - - mitochondrial ribosomal protein S18A [Source:ZFIN;Acc:ZDB-GENE-041210-109]
90. gabarapl2 ENSDARG00000027200 5120 0.97 - - 0.970 - - - - - - GABA(A) receptor-associated protein like 2 [Source:ZFIN;Acc:ZDB-GENE-040718-336]
91. gm2a ENSDARG00000088439 5387 0.969 - - 0.969 - - - - - - GM2 ganglioside activator [Source:ZFIN;Acc:ZDB-GENE-050417-373]
92. ACVR1B ACVR1B 4824 0.968 - - 0.968 - - - - - -
93. wdr45 ENSDARG00000090219 829 0.967 - - 0.967 - - - - - - WD repeat domain 45 [Source:ZFIN;Acc:ZDB-GENE-040426-990]
94. NDUFB2 ENSDARG00000045490 9141 0.967 - - 0.967 - - - - - - NADH:ubiquinone oxidoreductase subunit B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1762]
95. gmppb ENSDARG00000017658 3484 0.966 - - 0.966 - - - - - - GDP-mannose pyrophosphorylase B [Source:ZFIN;Acc:ZDB-GENE-040801-234]
96. alas2 ENSDARG00000038643, ENSDARG00000113125 4935 0.965 - - 0.965 - - - - - - aminolevulinate, delta-, synthase 2 [Source:ZFIN;Acc:ZDB-GENE-001229-1]
97. camk2d2 ENSDARG00000014273 2840 0.964 - - 0.964 - - - - - - calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 2 [Source:ZFIN;Acc:ZDB-GENE-040718-277]
98. creb1a ENSDARG00000053586 5068 0.963 - - 0.963 - - - - - - cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
99. sec23a ENSDARG00000104230 3910 0.963 - - 0.963 - - - - - - Sec23 homolog A, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-040426-2823]
100. si:ch211-113a14.18 ENSDARG00000051735 1253 0.963 - - 0.963 - - - - - - si:ch211-113a14.18 [Source:ZFIN;Acc:ZDB-GENE-121214-116]

There are 432 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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