Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for nid1a

Gene Name Gene ID Reads Annotation
nid1a ENSDARG00000068710 3948 nidogen 1a [Source:ZFIN;Acc:ZDB-GENE-050302-58]










Genes with expression patterns similar to nid1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nid1a ENSDARG00000068710 3948 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 nidogen 1a [Source:ZFIN;Acc:ZDB-GENE-050302-58]
2. zgc:92518 ENSDARG00000016343 3837 4.171 0.770 - - 0.776 0.793 0.891 0.941 - - zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
3. fxr2 ENSDARG00000016260, ENSDARG00000116730 10030 3.937 0.754 - - - 0.732 0.810 0.932 0.709 - fragile X mental retardation, autosomal homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-943]
4. tnnt2d ENSDARG00000002988 7590 3.915 0.757 - - 0.703 0.774 0.786 0.895 - - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
5. cav3 ENSDARG00000024141 14906 3.384 - - - 0.740 0.776 - 0.914 - 0.954 caveolin 3 [Source:ZFIN;Acc:ZDB-GENE-050522-426]
6. txlnbb ENSDARG00000076241 6396 3.248 0.751 - - - 0.776 0.797 0.924 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
7. NRAP ENSDARG00000009341 3565 3.194 0.752 - - 0.706 - 0.812 0.924 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
8. jph2 ENSDARG00000028625 6706 3.147 - - - 0.704 0.770 0.761 0.912 - - junctophilin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9848]
9. cap2 ENSDARG00000104478 3266 3.135 0.700 - - 0.749 - 0.766 0.920 - - CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
10. trim63 trim63 2437 3.11 0.708 - - 0.716 - 0.817 0.869 - -
11. znf648 ENSDARG00000104823 1918 3.072 0.705 - - - 0.764 0.729 0.874 - - zinc finger protein 648 [Source:ZFIN;Acc:ZDB-GENE-120215-149]
12. vcl vcl 6667 2.961 0.707 - 0.743 0.765 0.746 - - - -
13. atp2a1 ENSDARG00000020574 291561 2.906 0.723 - - 0.713 0.760 - 0.710 - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. acta1b ENSDARG00000055618 195597 2.836 0.706 - 0.709 - - 0.706 0.715 - - actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
15. kbtbd12 ENSDARG00000001882 1196 2.729 - - - - - 0.826 0.908 - 0.995 kelch repeat and BTB (POZ) domain containing 12 [Source:ZFIN;Acc:ZDB-GENE-050904-1]
16. naa15a ENSDARG00000003213 5889 2.692 - - - - - 0.868 0.837 - 0.987 N(alpha)-acetyltransferase 15, NatA auxiliary subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-2392]
17. tmem182 tmem182 12589 2.579 - - - 0.728 - 0.889 0.962 - -
18. nexn ENSDARG00000057317 10972 2.566 - - - 0.720 - 0.899 0.947 - - nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
19. zgc:158296 ENSDARG00000070923 3935 2.555 - - - 0.785 - 0.818 0.952 - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
20. chchd3 chchd3 4139 2.541 0.794 - - - - 0.866 0.881 - -
21. chrna1 ENSDARG00000009021 2931 2.536 0.738 - - - - 0.904 0.894 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
22. atp1b3b ENSDARG00000042837 5163 2.531 0.716 - - - - 0.938 0.877 - - ATPase Na+/K+ transporting subunit beta 3b [Source:ZFIN;Acc:ZDB-GENE-001127-1]
23. tgm2a ENSDARG00000070157 4516 2.508 - - - 0.768 - 0.833 0.907 - - transglutaminase 2, C polypeptide A [Source:ZFIN;Acc:ZDB-GENE-040912-78]
24. jph1b ENSDARG00000038826 7416 2.502 - - - 0.785 - - 0.726 - 0.991 junctophilin 1b [Source:ZFIN;Acc:ZDB-GENE-060616-389]
25. klhl41b ENSDARG00000006757 10762 2.496 0.736 - - - - 0.827 0.933 - - kelch-like family member 41b [Source:ZFIN;Acc:ZDB-GENE-030131-9875]
26. rtn2a ENSDARG00000016088 12184 2.484 0.732 - - - 0.791 - 0.961 - - reticulon 2a [Source:ZFIN;Acc:ZDB-GENE-060420-1]
27. mafa ENSDARG00000015890 2140 2.483 0.761 - - - - 0.846 0.876 - - v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog a (paralog a) [Source:ZFIN;Acc:ZDB-GENE-010605-2]
28. flncb ENSDARG00000018820 5595 2.477 0.733 - - - - 0.852 0.892 - - filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
29. ITGB1BP2 ENSDARG00000030176 2472 2.472 0.761 - - - - 0.787 0.924 - - integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
30. murcb murcb 13655 2.471 0.791 - - 0.743 - - 0.937 - -
31. stac3 ENSDARG00000098883 1765 2.465 0.733 - - - - 0.830 0.902 - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
32. tnnc1b ENSDARG00000037539 13945 2.455 - - - - 0.703 0.814 0.938 - - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
33. rp42-pen rp42-pen 3395 2.448 - - - - 0.708 0.841 0.899 - -
34. pvalb4 ENSDARG00000024433 35736 2.447 0.819 - - 0.708 - - 0.920 - - parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
35. EHBP1L1 EHBP1L1 2500 2.438 0.729 - - 0.779 - - 0.930 - -
36. pbxip1a ENSDARG00000071015 4960 2.438 0.801 - 0.740 - - - 0.897 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
37. ntmt1 ENSDARG00000022399 5779 2.413 - - - - 0.709 0.764 0.940 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
38. ndufv1 ENSDARG00000036438 8437 2.408 0.801 - - - - 0.871 0.736 - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:ZFIN;Acc:ZDB-GENE-040808-73]
39. pygma ENSDARG00000055518 15972 2.404 0.746 - - - 0.748 - 0.910 - - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
40. srl ENSDARG00000104587 11126 2.402 0.725 - - - 0.725 - 0.952 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
41. chrnd ENSDARG00000019342 2728 2.4 0.754 - 0.745 - - - 0.901 - - cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
42. tomm34 ENSDARG00000001557 1874 2.394 0.722 - - - - 0.811 0.861 - - translocase of outer mitochondrial membrane 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2081]
43. mibp2 ENSDARG00000101844 17444 2.392 0.750 - - - - 0.887 0.755 - - muscle-specific beta 1 integrin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031113-14]
44. cmya5 ENSDARG00000061379 1423 2.391 0.719 - - - - 0.770 0.902 - - cardiomyopathy associated 5 [Source:ZFIN;Acc:ZDB-GENE-070630-1]
45. ryr3 ENSDARG00000071331 6795 2.387 - - - - 0.724 0.751 0.912 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
46. sptb ENSDARG00000030490 7128 2.38 0.719 - - - - 0.707 0.954 - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
47. eef2k ENSDARG00000035835 2906 2.378 0.724 - - - - - 0.904 0.750 - eukaryotic elongation factor 2 kinase [Source:ZFIN;Acc:ZDB-GENE-020916-2]
48. ak1 ENSDARG00000001950 26964 2.376 - - - 0.759 0.803 - - - 0.814 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
49. six1b ENSDARG00000026473 1908 2.372 0.766 - - - - 0.728 0.878 - - SIX homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2308]
50. sgcd ENSDARG00000098573 4980 2.369 - - - 0.711 0.707 - 0.951 - - sarcoglycan, delta (dystrophin-associated glycoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-3684]
51. rbfox1l ENSDARG00000021184, ENSDARG00000111700 26249 2.358 - - 0.702 - 0.704 - 0.952 - - RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
52. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 2.357 0.706 - - - - 0.806 0.845 - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
53. MYOM3 2720 2.355 - - - - 0.703 0.797 0.855 - - myomesin 3, transcript variant X2
54. fxr1 ENSDARG00000022968 2831 2.349 0.728 - - - - 0.733 0.888 - - fragile X mental retardation, autosomal homolog 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5431]
55. ttnb ttnb 73721 2.314 - - - 0.702 0.845 0.767 - - -
56. actn3a ENSDARG00000013755, ENSDARG00000111128 22706 2.307 0.782 - - 0.722 0.803 - - - - actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
57. mef2d ENSDARG00000040237 6144 2.267 0.789 - - - - 0.707 0.771 - - myocyte enhancer factor 2d [Source:ZFIN;Acc:ZDB-GENE-990415-164]
58. klhl31 ENSDARG00000039066 13656 2.257 - - 0.723 - 0.767 - 0.767 - - kelch-like family member 31 [Source:ZFIN;Acc:ZDB-GENE-030131-2052]
59. setd3 ENSDARG00000016513 1507 2.255 0.704 - - - - 0.709 0.842 - - SET domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9137]
60. sox10 ENSDARG00000077467 1936 2.238 0.703 - - - - 0.726 0.809 - - SRY (sex determining region Y)-box 10 [Source:ZFIN;Acc:ZDB-GENE-011207-1]
61. tpma ENSDARG00000033683 752432 2.222 - - - 0.709 0.747 - 0.766 - - alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
62. mtdhb ENSDARG00000004939 1225 2.217 0.747 - - - - 0.718 0.752 - - metadherin b [Source:ZFIN;Acc:ZDB-GENE-090929-2]
63. casq2 ENSDARG00000008982 21802 2.196 0.754 - - 0.700 0.742 - - - - calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
64. eif4e2 ENSDARG00000038585 2116 2.192 0.704 - - - 0.703 - 0.785 - - eukaryotic translation initiation factor 4E family member 2 [Source:ZFIN;Acc:ZDB-GENE-050327-59]
65. NAT16 ENSDARG00000086222 4682 2.182 0.705 - - - - 0.769 0.708 - - N-acetyltransferase 16 [Source:ZFIN;Acc:ZDB-GENE-030219-43]
66. C1QBP ENSDARG00000039887 11186 1.876 - - - - - - 0.885 - 0.991 complement component 1, q subcomponent binding protein [Source:ZFIN;Acc:ZDB-GENE-050417-408]
67. stip1 ENSDARG00000004906 7742 1.853 - - - - - 0.867 - - 0.986 stress-induced phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-041121-17]
68. zgc:195001 ENSDARG00000070484 3281 1.85 - - - - - - 0.855 - 0.995 zgc:195001 [Source:ZFIN;Acc:ZDB-GENE-081022-173]
69. pfkmb ENSDARG00000060797, ENSDARG00000109412, ENSDARG00000109653, ENSDARG00000115422 3323 1.839 - - - - - 0.905 0.934 - - phosphofructokinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-081114-1]
70. myom1a ENSDARG00000061249 10230 1.834 - - - - - 0.886 0.948 - - myomesin 1a (skelemin) [Source:ZFIN;Acc:ZDB-GENE-030131-2856]
71. myod1 ENSDARG00000030110 6019 1.832 - - - - - 0.892 0.940 - - myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
72. ldb3a ENSDARG00000056322, ENSDARG00000116388 2569 1.816 - - - - - 0.922 0.894 - - LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]
73. dhrs7c dhrs7c 1173 1.804 - - - - - 0.890 0.914 - -
74. slc16a3 ENSDARG00000045051 818 1.794 - - - - - 0.856 0.938 - - solute carrier family 16 (monocarboxylate transporter), member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5487]
75. CR847973.1 ENSDARG00000115516 8754 1.794 - - - - - 0.923 0.871 - -
76. lims2 ENSDARG00000014976 1248 1.792 - - - - - 0.904 0.888 - - LIM and senescent cell antigen-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-050522-56]
77. gypc ENSDARG00000041546 1487 1.79 - - - - - 0.860 0.930 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
78. ppapdc3 ppapdc3 4924 1.781 - - - - - 0.857 0.924 - -
79. smtnl1 ENSDARG00000041257 7410 1.77 - - - - - 0.827 0.943 - - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
80. myf6 ENSDARG00000029830 1911 1.77 0.839 - - - - - 0.931 - - myogenic factor 6 [Source:ZFIN;Acc:ZDB-GENE-040309-2]
81. PTPLA PTPLA 4044 1.769 - - - - - 0.851 0.918 - -
82. acsl1 acsl1 4216 1.766 - - - - - 0.848 0.918 - -
83. tnnt2e ENSDARG00000045822, ENSDARG00000109924 3288 1.765 - - - - - 0.846 0.919 - - troponin T2e, cardiac [Source:ZFIN;Acc:ZDB-GENE-041210-27]
84. ATP5J_2 ATP5J_2 2381 1.763 - - - - - 0.825 0.938 - -
85. zgc:92113 1738 1.757 - - - - - 0.823 0.934 - - zgc:92113
86. igfbp5b ENSDARG00000025348 3803 1.753 0.762 - - - - - - - 0.991 insulin-like growth factor binding protein 5b [Source:ZFIN;Acc:ZDB-GENE-040319-2]
87. TRIM63 TRIM63 1600 1.752 - - - - - 0.847 0.905 - -
88. anxa6 ENSDARG00000013335 3588 1.748 - - - - - 0.842 0.906 - - annexin A6 [Source:ZFIN;Acc:ZDB-GENE-030707-3]
89. sh3bgr ENSDARG00000021633 3498 1.746 - - - - - 0.793 0.953 - - SH3 domain binding glutamate-rich protein [Source:ZFIN;Acc:ZDB-GENE-040801-27]
90. PTGES3L PTGES3L 4801 1.746 - - - - - 0.834 0.912 - -
91. cacng1 cacng1 3118 1.745 - - - - - 0.854 0.891 - -
92. sspn ENSDARG00000041747, ENSDARG00000114109, ENSDARG00000114643 1228 1.745 - - - - - 0.824 0.921 - - sarcospan (Kras oncogene-associated gene) [Source:ZFIN;Acc:ZDB-GENE-051127-43]
93. pabpc4 ENSDARG00000059259, ENSDARG00000111312 2392 1.739 - - - - - 0.895 0.844 - - poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]
94. si:ch211-255p10.3 ENSDARG00000096616 8336 1.739 - - - - - 0.872 0.867 - - si:ch211-255p10.3 [Source:ZFIN;Acc:ZDB-GENE-121214-339]
95. col4a2 ENSDARG00000104110 947 1.737 - - - - - 0.842 0.895 - - collagen, type IV, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-070725-3]
96. lpl ENSDARG00000087697 2578 1.737 - - - - - 0.944 0.793 - - lipoprotein lipase [Source:ZFIN;Acc:ZDB-GENE-990415-139]
97. ckmt2 ckmt2 768 1.734 - - - - - 0.833 0.901 - -
98. pfdn4 ENSDARG00000061228 8266 1.734 - - - - - - 0.754 - 0.980 prefoldin subunit 4 [Source:ZFIN;Acc:ZDB-GENE-100922-122]
99. DNAJA4 ENSDARG00000051762 5657 1.733 - - - - - 0.814 0.919 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
100. znf106a ENSDARG00000016651 6049 1.733 - - - - 0.786 - 0.947 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]

There are 1188 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA