Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for neil3

Gene Name Gene ID Reads Annotation
neil3 ENSDARG00000020079, ENSDARG00000111296 397 nei-like DNA glycosylase 3 [Source:ZFIN;Acc:ZDB-GENE-041114-18]










Genes with expression patterns similar to neil3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. neil3 ENSDARG00000020079, ENSDARG00000111296 397 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 nei-like DNA glycosylase 3 [Source:ZFIN;Acc:ZDB-GENE-041114-18]
2. f7 ENSDARG00000034862 405 1.857 0.910 0.947 - - - - - - - coagulation factor VII [Source:ZFIN;Acc:ZDB-GENE-010814-1]
3. ACKR3 ACKR3 235 1.773 0.812 0.961 - - - - - - -
4. flt4 ENSDARG00000104453 557 1.772 0.888 0.884 - - - - - - - fms-related tyrosine kinase 4 [Source:ZFIN;Acc:ZDB-GENE-980526-326]
5. si:dkeyp-89c11.3 si:dkeyp-89c11.3 343 1.771 - 0.913 - - - 0.858 - - -
6. pc pc 116 1.767 - 0.948 - - - 0.819 - - -
7. fbxo42 ENSDARG00000087545 262 1.763 0.816 0.947 - - - - - - - F-box protein 42 [Source:ZFIN;Acc:ZDB-GENE-030131-7399]
8. fam63b 484 1.758 - 0.984 - - - - 0.774 - - family with sequence similarity 63, member B
9. tmem150a tmem150a 543 1.749 0.780 0.969 - - - - - - -
10. rab40c ENSDARG00000061208 1072 1.721 0.763 0.958 - - - - - - - RAB40c, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030515-1]
11. PDZD8 ENSDARG00000088699 844 1.713 0.861 0.852 - - - - - - - PDZ domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-110310-2]
12. CABZ01085085.1 CABZ01085085.1 123 1.689 0.750 0.939 - - - - - - -
13. si:dkey-238o14.5 si:dkey-238o14.5 450 1.677 0.960 - - - - 0.717 - - -
14. RELL1 ENSDARG00000018312 579 1.657 - 0.876 - - - 0.781 - - - RELT like 1 [Source:ZFIN;Acc:ZDB-GENE-161213-2]
15. cx30.3 ENSDARG00000042707, ENSDARG00000116331 2399 1.639 0.704 0.935 - - - - - - - connexin 30.3 [Source:ZFIN;Acc:ZDB-GENE-040406-1]
16. sfrp1b ENSDARG00000057678, ENSDARG00000115373 95 1.627 0.768 0.859 - - - - - - - secreted frizzled-related protein 1b [Source:ZFIN;Acc:ZDB-GENE-061103-1]
17. CABZ01003826.1_1 CABZ01003826.1_1 1154 1.626 - 0.888 - 0.738 - - - - -
18. ptk2bb ENSDARG00000039577 776 1.624 - 0.915 - - - 0.709 - - - protein tyrosine kinase 2 beta, b [Source:ZFIN;Acc:ZDB-GENE-020507-1]
19. CT485993.2 CT485993.2 1419 1.617 - 0.838 - - - 0.779 - - -
20. ISCA2 ENSDARG00000038154 489 1.616 - 0.884 - - - 0.732 - - - iron-sulfur cluster assembly 2 [Source:ZFIN;Acc:ZDB-GENE-131121-486]
21. zgc:64002 ENSDARG00000086998, ENSDARG00000113075, ENSDARG00000116103 170 1.613 - 0.887 - - - 0.726 - - - zgc:64002 [Source:ZFIN;Acc:ZDB-GENE-040426-1329]
22. rhoua ENSDARG00000019709 1506 1.592 - 0.863 - - - 0.729 - - - ras homolog family member Ua [Source:ZFIN;Acc:ZDB-GENE-040618-3]
23. zgc:136858 ENSDARG00000070830 165 1.56 0.721 - - - - 0.839 - - - zgc:136858 [Source:ZFIN;Acc:ZDB-GENE-060421-6632]
24. nup107 ENSDARG00000016010 1043 1.552 0.778 - - - - 0.774 - - - nucleoporin 107 [Source:ZFIN;Acc:ZDB-GENE-041210-245]
25. hsd3b7 ENSDARG00000036966, ENSDARG00000111892, ENSDARG00000114115 797 1.546 0.800 - - - - 0.746 - - - hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase [Source:ZFIN;Acc:ZDB-GENE-030131-5673]
26. FAM35A FAM35A 1091 1.539 0.793 - - - - 0.746 - - -
27. man1b1 man1b1 3294 1.525 0.723 0.802 - - - - - - -
28. parp2 ENSDARG00000079202, ENSDARG00000111737 878 1.51 - 0.714 - - - - 0.796 - - poly (ADP-ribose) polymerase 2 [Source:ZFIN;Acc:ZDB-GENE-031113-6]
29. zgc:101664 ENSDARG00000035700 530 1.498 - 0.797 - - - 0.701 - - - zgc:101664 [Source:ZFIN;Acc:ZDB-GENE-041010-187]
30. abcb6b ENSDARG00000074254 600 1.431 0.712 - - 0.719 - - - - - ATP-binding cassette, sub-family B (MDR/TAP), member 6b [Source:ZFIN;Acc:ZDB-GENE-070912-584]
31. NUDT8 ENSDARG00000007722 329 0.997 - 0.997 - - - - - - - nudix (nucleoside diphosphate linked moiety X)-type motif 8 [Source:ZFIN;Acc:ZDB-GENE-061013-219]
32. si:dkey-154p10.3 ENSDARG00000068366 153 0.993 - 0.993 - - - - - - - si:dkey-154p10.3 [Source:ZFIN;Acc:ZDB-GENE-070912-380]
33. si:dkey-114b16.4 si:dkey-114b16.4 35 0.993 - 0.993 - - - - - - -
34. uevld ENSDARG00000009266, ENSDARG00000116754 377 0.992 - 0.992 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:ZFIN;Acc:ZDB-GENE-040801-138]
35. si:ch211-105d18.6 si:ch211-105d18.6 59 0.992 - 0.992 - - - - - - -
36. ppapdc2 ppapdc2 67 0.991 - 0.991 - - - - - - -
37. CT573322.1 CT573322.1 38 0.991 - 0.991 - - - - - - -
38. CABZ01109624.1 CABZ01109624.1 25 0.99 - 0.990 - - - - - - -
39. si:ch211-39a7.1 ENSDARG00000037427 31 0.99 - 0.990 - - - - - - - si:ch211-39a7.1 [Source:ZFIN;Acc:ZDB-GENE-060503-606]
40. ZP2 ZP2 14 0.99 - 0.990 - - - - - - -
41. si:dkey-228i19.34 si:dkey-228i19.34 43 0.99 - 0.990 - - - - - - -
42. CABZ01066717.1 CABZ01066717.1 351 0.99 - 0.990 - - - - - - -
43. TEAD1 TEAD1 43 0.99 - 0.990 - - - - - - -
44. pgap2 ENSDARG00000044596 60 0.99 - 0.990 - - - - - - - post-GPI attachment to proteins 2 [Source:ZFIN;Acc:ZDB-GENE-050320-119]
45. U3_5 U3_5 67 0.99 - 0.990 - - - - - - -
46. si:ch1073-155h21.1 ENSDARG00000007582 137 0.989 - 0.989 - - - - - - - si:ch1073-155h21.1 [Source:ZFIN;Acc:ZDB-GENE-030131-2664]
47. smdt1 smdt1 99 0.989 - 0.989 - - - - - - -
48. SLC38A9 ENSDARG00000032769 35 0.989 - 0.989 - - - - - - - solute carrier family 38, member 9 [Source:ZFIN;Acc:ZDB-GENE-061013-597]
49. cacng6a ENSDARG00000036457 344 0.988 - 0.988 - - - - - - - calcium channel, voltage-dependent, gamma subunit 6a [Source:ZFIN;Acc:ZDB-GENE-060503-440]
50. MAP3K2 ENSDARG00000062884 34 0.988 - 0.988 - - - - - - - mitogen-activated protein kinase kinase kinase 2 [Source:ZFIN;Acc:ZDB-GENE-120215-96]
51. gfi1ab ENSDARG00000044457, ENSDARG00000114140 125 0.988 - 0.988 - - - - - - - growth factor independent 1A transcription repressor b [Source:ZFIN;Acc:ZDB-GENE-040116-8]
52. zgc:109744 ENSDARG00000070800 262 0.987 - 0.987 - - - - - - - zgc:109744 [Source:ZFIN;Acc:ZDB-GENE-050809-146]
53. C12H10orf2 C12H10orf2 245 0.987 - 0.987 - - - - - - -
54. CR388047.3 ENSDARG00000117023 89 0.987 - 0.987 - - - - - - -
55. cox7a1 ENSDARG00000069464, ENSDARG00000112682 243 0.986 - 0.986 - - - - - - - cytochrome c oxidase subunit 7A1 [Source:ZFIN;Acc:ZDB-GENE-060929-340]
56. kcnk13a ENSDARG00000008212 136 0.986 - 0.986 - - - - - - - potassium channel, subfamily K, member 13a [Source:ZFIN;Acc:ZDB-GENE-080219-46]
57. usp45 ENSDARG00000075013 227 0.986 - 0.986 - - - - - - - ubiquitin specific peptidase 45 [Source:ZFIN;Acc:ZDB-GENE-100211-2]
58. TM2D2 ENSDARG00000035515 561 0.985 - 0.985 - - - - - - - TM2 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040718-387]
59. gemin4 ENSDARG00000041252, ENSDARG00000115829 226 0.985 - 0.985 - - - - - - - gem (nuclear organelle) associated protein 4 [Source:ZFIN;Acc:ZDB-GENE-050522-188]
60. gbx2 ENSDARG00000002933, ENSDARG00000116377 633 0.985 - 0.985 - - - - - - - gastrulation brain homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-020509-2]
61. foxn4 ENSDARG00000010591 2332 0.985 - 0.985 - - - - - - - forkhead box N4 [Source:ZFIN;Acc:ZDB-GENE-990415-277]
62. CABZ01114089.1 CABZ01114089.1 127 0.984 - 0.984 - - - - - - -
63. unc13d ENSDARG00000078249 91 0.984 - 0.984 - - - - - - - unc-13 homolog D (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-110411-188]
64. plce1 ENSDARG00000087921 44 0.983 - 0.983 - - - - - - - phospholipase C, epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-061212-4]
65. cyp2aa1 ENSDARG00000099003 297 0.982 - 0.982 - - - - - - - cytochrome P450, family 2, subfamily AA, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-070424-33]
66. rab33ba ENSDARG00000052290 914 0.982 - 0.982 - - - - - - - RAB33B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-050809-122]
67. UBASH3B UBASH3B 292 0.982 - 0.982 - - - - - - -
68. fam57ba ENSDARG00000026875 504 0.98 - 0.980 - - - - - - - family with sequence similarity 57, member Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2046]
69. cd74a ENSDARG00000009087 20 0.98 - 0.980 - - - - - - - CD74 molecule, major histocompatibility complex, class II invariant chain a [Source:ZFIN;Acc:ZDB-GENE-000901-1]
70. RNF130 ENSDARG00000089767 559 0.979 - 0.979 - - - - - - - ring finger protein 130 [Source:ZFIN;Acc:ZDB-GENE-050522-525]
71. CR376783.1 ENSDARG00000074235 259 0.978 - 0.978 - - - - - - - V-set domain-containing T-cell activation inhibitor 1-like [Source:NCBI gene;Acc:797620]
72. tmem192 ENSDARG00000037484, ENSDARG00000116740 269 0.978 - 0.978 - - - - - - - transmembrane protein 192 [Source:ZFIN;Acc:ZDB-GENE-040426-2254]
73. casp3b ENSDARG00000055045 54 0.978 - 0.978 - - - - - - - caspase 3, apoptosis-related cysteine peptidase b [Source:ZFIN;Acc:ZDB-GENE-070607-1]
74. casp2 ENSDARG00000062052 559 0.978 - 0.978 - - - - - - - caspase 2, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-030825-3]
75. cflara ENSDARG00000055966 464 0.977 - 0.977 - - - - - - - CASP8 and FADD-like apoptosis regulator a [Source:ZFIN;Acc:ZDB-GENE-030826-3]
76. rnf34a ENSDARG00000038300 179 0.977 - 0.977 - - - - - - - ring finger protein 34a [Source:ZFIN;Acc:ZDB-GENE-030131-6135]
77. tbcelb ENSDARG00000019525 299 0.976 - 0.976 - - - - - - - tubulin folding cofactor E-like b [Source:ZFIN;Acc:ZDB-GENE-100921-13]
78. acad11 ENSDARG00000045411 350 0.976 - 0.976 - - - - - - - acyl-CoA dehydrogenase family, member 11 [Source:ZFIN;Acc:ZDB-GENE-040426-814]
79. trmt1l ENSDARG00000042057 466 0.974 - 0.974 - - - - - - - tRNA methyltransferase 1-like [Source:ZFIN;Acc:ZDB-GENE-041014-189]
80. alg9 ENSDARG00000012840 631 0.974 - 0.974 - - - - - - - ALG9, alpha-1,2-mannosyltransferase [Source:ZFIN;Acc:ZDB-GENE-040426-1270]
81. nipsnap1 ENSDARG00000005320 330 0.974 - 0.974 - - - - - - - nipsnap homolog 1 (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-991008-17]
82. cmasb 499 0.974 - 0.974 - - - - - - - cytidine monophosphate N-acetylneuraminic acid synthetase b
83. btbd6a ENSDARG00000076440 748 0.973 - 0.973 - - - - - - - BTB (POZ) domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-080218-26]
84. tph1b ENSDARG00000036082, ENSDARG00000112888 79 0.973 0.973 - - - - - - - - tryptophan hydroxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030805-6]
85. si:ch211-215d8.2 ENSDARG00000093233 784 0.973 - 0.973 - - - - - - - si:ch211-215d8.2 [Source:ZFIN;Acc:ZDB-GENE-050419-248]
86. gpam ENSDARG00000074169 488 0.973 - 0.973 - - - - - - - glycerol-3-phosphate acyltransferase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-101026-1]
87. sowahcb ENSDARG00000059582 178 0.972 - 0.972 - - - - - - - sosondowah ankyrin repeat domain family Cb [Source:ZFIN;Acc:ZDB-GENE-061215-96]
88. esrrd ENSDARG00000015064 291 0.97 - 0.970 - - - - - - - estrogen-related receptor delta [Source:ZFIN;Acc:ZDB-GENE-040616-3]
89. kcnj1a.4 ENSDARG00000090635 356 0.97 - 0.970 - - - - - - - potassium inwardly-rectifying channel, subfamily J, member 1a, tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-050420-186]
90. rmdn3 ENSDARG00000041407, ENSDARG00000116827 149 0.969 - 0.969 - - - - - - - regulator of microtubule dynamics 3 [Source:ZFIN;Acc:ZDB-GENE-041014-256]
91. si:dkeyp-13a3.10 ENSDARG00000092225 1054 0.969 - 0.969 - - - - - - - si:dkeyp-13a3.10 [Source:ZFIN;Acc:ZDB-GENE-070912-636]
92. six2a ENSDARG00000058004, ENSDARG00000115214 414 0.968 - 0.968 - - - - - - - SIX homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-010412-1]
93. ATP5J 343 0.968 - 0.968 - - - - - - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6, transcript variant X2
94. slc30a10 ENSDARG00000103983 46 0.968 0.968 - - - - - - - - solute carrier family 30, member 10 [Source:ZFIN;Acc:ZDB-GENE-060608-2]
95. sh3pxd2aa ENSDARG00000060148 913 0.967 - 0.967 - - - - - - - SH3 and PX domains 2Aa [Source:ZFIN;Acc:ZDB-GENE-060503-271]
96. CYSTM1 CYSTM1 176 0.966 - 0.966 - - - - - - -
97. has3 ENSDARG00000057210, ENSDARG00000116537 108 0.966 0.966 - - - - - - - - hyaluronan synthase 3 [Source:ZFIN;Acc:ZDB-GENE-021118-1]
98. BX005085.1 ENSDARG00000089947 230 0.966 - 0.966 - - - - - - -
99. fam105bb fam105bb 1253 0.965 - 0.965 - - - - - - -
100. LPHN3 LPHN3 195 0.965 0.965 - - - - - - - -

There are 895 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA