Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ndufs4

Gene Name Gene ID Reads Annotation
ndufs4 ENSDARG00000052840, ENSDARG00000110036 3441 NADH:ubiquinone oxidoreductase subunit S4 [Source:ZFIN;Acc:ZDB-GENE-050522-421]










Genes with expression patterns similar to ndufs4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ndufs4 ENSDARG00000052840, ENSDARG00000110036 3441 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 NADH:ubiquinone oxidoreductase subunit S4 [Source:ZFIN;Acc:ZDB-GENE-050522-421]
2. USMG5 USMG5 10356 2.669 - 0.839 - - - 0.983 0.847 - -
3. WDR83OS ENSDARG00000025554 7117 2.61 - - - - - 0.995 0.776 0.839 - WD repeat domain 83 opposite strand [Source:ZFIN;Acc:ZDB-GENE-040426-1674]
4. bckdha ENSDARG00000040555, ENSDARG00000111762 7620 2.511 0.820 - - - - - 0.845 0.846 - branched chain keto acid dehydrogenase E1, alpha polypeptide [Source:ZFIN;Acc:ZDB-GENE-050522-376]
5. tmed7 ENSDARG00000046022 2435 2.277 0.703 - - - - - 0.782 0.792 - transmembrane p24 trafficking protein 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2570]
6. cct8 ENSDARG00000008243 6843 2.274 0.742 - - - - - 0.728 0.804 - chaperonin containing TCP1, subunit 8 (theta) [Source:ZFIN;Acc:ZDB-GENE-040426-876]
7. tceb1b 14935 1.823 - - - - - 0.975 0.848 - - transcription elongation factor B (SIII), polypeptide 1b
8. ppp1cab ENSDARG00000071566 4350 1.797 - - - - - 0.995 0.802 - - protein phosphatase 1, catalytic subunit, alpha isozyme b [Source:ZFIN;Acc:ZDB-GENE-030131-5512]
9. tmx1 ENSDARG00000019487 1129 1.796 - 0.866 - - - - - 0.930 - thioredoxin-related transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2327]
10. hoxb8a ENSDARG00000056027 6340 1.772 - - - - - 0.946 - 0.826 - homeobox B8a [Source:ZFIN;Acc:ZDB-GENE-990415-108]
11. cyb5r1 ENSDARG00000018966, ENSDARG00000112062 1017 1.767 - - - - - 0.996 0.771 - - cytochrome b5 reductase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8497]
12. prpf4bb ENSDARG00000040310 2260 1.76 - 0.853 - - - - - 0.907 - pre-mRNA processing factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2799]
13. ank1 ank1 5209 1.739 - 0.763 - - - 0.976 - - -
14. zfr ENSDARG00000027109, ENSDARG00000116459 4171 1.736 - - - - - 0.994 0.742 - - zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
15. calm2b 3890 1.732 0.740 - - - - 0.992 - - - calmodulin 2b, (phosphorylase kinase, delta)
16. scinla ENSDARG00000102415, ENSDARG00000117110 1996 1.713 - 0.721 - - - 0.992 - - - scinderin like a [Source:ZFIN;Acc:ZDB-GENE-030131-2005]
17. cplx2 ENSDARG00000061918, ENSDARG00000111920 3673 1.713 - 0.739 - - - 0.974 - - - complexin 2 [Source:ZFIN;Acc:ZDB-GENE-081113-1]
18. ube2i ube2i 13024 1.71 - - - - - 0.994 0.716 - -
19. mrpl11 ENSDARG00000013075 2927 1.706 0.787 - - - - - - 0.919 - mitochondrial ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040718-294]
20. hsd11b3a hsd11b3a 1388 1.696 - 0.702 - - - 0.994 - - -
21. COA6 ENSDARG00000092677 1877 1.682 - 0.801 - - - - 0.881 - - cytochrome c oxidase assembly factor 6 [Source:ZFIN;Acc:ZDB-GENE-070705-152]
22. syncripl ENSDARG00000026723 3889 1.66 0.744 0.916 - - - - - - - synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
23. sgk2b ENSDARG00000006598 1039 1.658 - 0.913 - - - - 0.745 - - serum/glucocorticoid regulated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-44]
24. tmem55a 1331 1.656 0.741 - - - - - - 0.915 - transmembrane protein 55A
25. slc25a11 ENSDARG00000035741 3377 1.645 - 0.820 - - - - 0.825 - - solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 [Source:ZFIN;Acc:ZDB-GENE-040625-79]
26. tial1 ENSDARG00000009525 1856 1.643 - 0.757 - - - - - 0.886 - TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1547]
27. mrps11 ENSDARG00000075129 1360 1.641 - 0.936 - - - - 0.705 - - mitochondrial ribosomal protein S11 [Source:ZFIN;Acc:ZDB-GENE-040724-84]
28. ddx23 ENSDARG00000021945, ENSDARG00000116153 2265 1.633 - 0.798 - - - - - 0.835 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]
29. hadhab ENSDARG00000060594 3664 1.633 0.763 - - - - - 0.870 - - hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha b [Source:ZFIN;Acc:ZDB-GENE-041111-204]
30. pygmb ENSDARG00000013317 5454 1.628 - 0.740 - - - 0.888 - - - phosphorylase, glycogen, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-1206]
31. ndufb11 ENSDARG00000043467 7495 1.624 0.839 - - - - - 0.785 - - NADH:ubiquinone oxidoreductase subunit B11 [Source:ZFIN;Acc:ZDB-GENE-050309-25]
32. mdh2 ENSDARG00000043371 14485 1.621 - - - - - 0.847 0.774 - - malate dehydrogenase 2, NAD (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-040426-2143]
33. eif4h ENSDARG00000042252 6742 1.62 - - - - - - 0.747 0.873 - eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
34. dnm1l ENSDARG00000015006 1729 1.618 - 0.738 - - - - - 0.880 - dynamin 1-like [Source:ZFIN;Acc:ZDB-GENE-040426-1556]
35. stxbp3 ENSDARG00000008142 2604 1.615 - 0.867 - - - - 0.748 - - syntaxin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2833]
36. RNF5 ENSDARG00000075606 1730 1.615 0.702 - - - - - - 0.913 - ring finger protein 5 [Source:HGNC Symbol;Acc:HGNC:10068]
37. ppme1 ENSDARG00000009771 1697 1.615 - 0.890 - - - - 0.725 - - protein phosphatase methylesterase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7064]
38. pdlim4 ENSDARG00000068973 2567 1.614 - 0.712 - - - - - 0.902 - PDZ and LIM domain 4 [Source:ZFIN;Acc:ZDB-GENE-070308-5]
39. si:dkey-238o13.4 ENSDARG00000078847 884 1.613 - - - - 0.722 - - 0.891 - si:dkey-238o13.4 [Source:ZFIN;Acc:ZDB-GENE-070705-403]
40. map3k7 ENSDARG00000020469 2845 1.61 0.744 - - - - - 0.866 - - mitogen-activated protein kinase kinase kinase 7 [Source:ZFIN;Acc:ZDB-GENE-041001-135]
41. stk11 ENSDARG00000046074 506 1.608 - 0.838 - - - - 0.770 - - serine/threonine kinase 11 [Source:ZFIN;Acc:ZDB-GENE-050417-383]
42. vapal ENSDARG00000115862 3108 1.598 0.738 - - - - - 0.860 - - VAMP (vesicle-associated membrane protein)-associated protein A, like [Source:ZFIN;Acc:ZDB-GENE-040718-281]
43. mccc2 ENSDARG00000017571 5635 1.596 0.819 - - - - 0.777 - - - methylcrotonoyl-CoA carboxylase 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040426-2493]
44. atoh8 ENSDARG00000037555, ENSDARG00000110248 2059 1.59 0.729 - - - - - 0.861 - - atonal bHLH transcription factor 8 [Source:ZFIN;Acc:ZDB-GENE-061215-7]
45. ankrd28b ENSDARG00000009023 960 1.586 0.742 0.844 - - - - - - - ankyrin repeat domain 28b [Source:ZFIN;Acc:ZDB-GENE-070622-4]
46. nop10 ENSDARG00000104227 2463 1.583 0.827 - - - - - 0.756 - - NOP10 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-041007-4]
47. cox17 ENSDARG00000069920, ENSDARG00000114117 5591 1.574 0.867 - - - - - 0.707 - - cytochrome c oxidase copper chaperone COX17 [Source:ZFIN;Acc:ZDB-GENE-040912-91]
48. tcp11l2 ENSDARG00000027316 1906 1.572 0.754 - - - - - 0.818 - - t-complex 11, testis-specific-like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1956]
49. dlg5a ENSDARG00000074059 1834 1.56 0.717 - - - - - - 0.843 - discs, large homolog 5a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-3149]
50. gps1 ENSDARG00000040650 3893 1.556 - 0.790 - - - - 0.766 - - G protein pathway suppressor 1 [Source:ZFIN;Acc:ZDB-GENE-041111-240]
51. ktn1 ENSDARG00000032802 6251 1.554 0.850 - - - - - 0.704 - - kinectin 1 [Source:ZFIN;Acc:ZDB-GENE-030408-4]
52. vgll4b ENSDARG00000103730 5266 1.553 - - - - - - 0.735 0.818 - vestigial-like family member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-2445]
53. CARKD 1398 1.54 0.733 0.807 - - - - - - - carbohydrate kinase domain containing, transcript variant X7
54. srp19 ENSDARG00000035699 2624 1.54 0.718 - - - - - - 0.822 - signal recognition particle 19 [Source:ZFIN;Acc:ZDB-GENE-040426-2657]
55. psmc4 ENSDARG00000027099, ENSDARG00000109415 6643 1.538 - - - 0.718 - - 0.820 - - proteasome 26S subunit, ATPase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5083]
56. FRRS1_1 FRRS1_1 831 1.536 - 0.820 - 0.716 - - - - -
57. JHDM1D JHDM1D 2277 1.535 - - - - - - 0.714 0.821 -
58. mdh1b ENSDARG00000018008 3196 1.532 - 0.831 - - - - 0.701 - - malate dehydrogenase 1B, NAD (soluble) [Source:ZFIN;Acc:ZDB-GENE-060929-384]
59. rnf121 ENSDARG00000060282 1809 1.532 - 0.814 - - - - 0.718 - - ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
60. chchd3 chchd3 4139 1.53 - 0.812 - - - - 0.718 - -
61. lmnb1 ENSDARG00000044299 9817 1.527 0.777 - - - - - 0.750 - - lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]
62. ube2f ENSDARG00000025754 1946 1.527 0.783 - - - - - 0.744 - - ubiquitin-conjugating enzyme E2F (putative) [Source:ZFIN;Acc:ZDB-GENE-040426-2557]
63. RAC1 RAC1 2008 1.524 - - - 0.807 - - 0.717 - -
64. tead3a ENSDARG00000074321 2240 1.522 - 0.743 - - - - 0.779 - - TEA domain family member 3 a [Source:ZFIN;Acc:ZDB-GENE-031112-10]
65. PHB2 PHB2 3755 1.521 - - - - - - 0.714 0.807 -
66. capza1b ENSDARG00000056090, ENSDARG00000109842, ENSDARG00000110402 12199 1.521 0.708 - - - - - 0.813 - - capping actin protein of muscle Z-line subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-031002-24]
67. lmo4a ENSDARG00000013853, ENSDARG00000111873, ENSDARG00000113473 2584 1.52 - - - - - 0.755 - 0.765 - LIM domain only 4a [Source:ZFIN;Acc:ZDB-GENE-010702-1]
68. tet3 ENSDARG00000062646 6672 1.517 - - - - - - 0.724 0.793 - tet methylcytosine dioxygenase 3 [Source:ZFIN;Acc:ZDB-GENE-060526-109]
69. huwe1 ENSDARG00000016782 6493 1.513 - 0.711 - - - - - 0.802 - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
70. Sep-06 Sep-06 5465 1.508 0.772 - - - - - 0.736 - -
71. pdcd4a ENSDARG00000021702 7293 1.506 - 0.752 - - - - 0.754 - - programmed cell death 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1920]
72. SNORD72 SNORD72 4018 1.505 - 0.704 - - - - - 0.801 -
73. ablim3 ENSDARG00000088168, ENSDARG00000112071, ENSDARG00000114074 573 1.501 - - - 0.794 - - 0.707 - - actin binding LIM protein family, member 3 [Source:ZFIN;Acc:ZDB-GENE-070112-1122]
74. mrpl37 ENSDARG00000062916 1600 1.499 0.787 - - - - - 0.712 - - mitochondrial ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-050309-20]
75. gfer ENSDARG00000070061 1119 1.496 0.780 - - - - - 0.716 - - growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060810-186]
76. mrps33 ENSDARG00000020015 3551 1.494 - 0.717 - - - - 0.777 - - mitochondrial ribosomal protein S33 [Source:ZFIN;Acc:ZDB-GENE-040715-6]
77. vta1 ENSDARG00000013732 6072 1.488 0.782 - - - - - - 0.706 - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
78. ufc1 ENSDARG00000022340 2618 1.487 - 0.744 - - - - 0.743 - - ubiquitin-fold modifier conjugating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040801-268]
79. anp32e ENSDARG00000054804 11017 1.483 - 0.732 - - - - 0.751 - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Source:ZFIN;Acc:ZDB-GENE-040426-2448]
80. atpif1a 6030 1.475 0.704 - - - - - 0.771 - - ATPase inhibitory factor 1a
81. fgfr1a ENSDARG00000011027 2705 1.473 - 0.709 - - - - 0.764 - - fibroblast growth factor receptor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-255]
82. tspan18b ENSDARG00000015015 1433 1.469 0.745 0.724 - - - - - - - tetraspanin 18b [Source:ZFIN;Acc:ZDB-GENE-040718-137]
83. MRPS36 ENSDARG00000079823, ENSDARG00000113427 3694 1.466 0.738 - - - - - 0.728 - - mitochondrial ribosomal protein S36 [Source:ZFIN;Acc:ZDB-GENE-081104-343]
84. emp2 ENSDARG00000044588 12560 1.441 - - - 0.723 - - 0.718 - - epithelial membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040822-24]
85. zc2hc1a ENSDARG00000027915, ENSDARG00000112745 974 1.429 0.727 - - 0.702 - - - - - zinc finger, C2HC-type containing 1A [Source:ZFIN;Acc:ZDB-GENE-030131-3132]
86. sumo2b ENSDARG00000102741 18514 1.427 - - - - - 0.702 - 0.725 - small ubiquitin-like modifier 2b [Source:ZFIN;Acc:ZDB-GENE-040801-7]
87. ppdpfa ENSDARG00000007682 3214 1.42 - 0.717 - - - - 0.703 - - pancreatic progenitor cell differentiation and proliferation factor a [Source:ZFIN;Acc:ZDB-GENE-030219-204]
88. acvr1b acvr1b 2963 1.415 - - - 0.708 - - 0.707 - -
89. sumo3b ENSDARG00000035993 3414 1.411 0.708 - - - - - - 0.703 - small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
90. hsdl2 ENSDARG00000002523 2746 0.997 - - - - - 0.997 - - - hydroxysteroid dehydrogenase like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1066]
91. sorbs1 ENSDARG00000103435 2297 0.997 - - - - - 0.997 - - - sorbin and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-168]
92. mrpl45 ENSDARG00000044942, ENSDARG00000114416, ENSDARG00000115767 1599 0.997 - - - - - 0.997 - - - mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041]
93. MYADM ENSDARG00000086815 659 0.996 - - - - - 0.996 - - - myeloid associated differentiation marker [Source:HGNC Symbol;Acc:HGNC:7544]
94. fam129bb ENSDARG00000008026, ENSDARG00000111074 702 0.996 - - - - - 0.996 - - - family with sequence similarity 129, member Bb [Source:ZFIN;Acc:ZDB-GENE-030131-6218]
95. anks1b ENSDARG00000003512 847 0.996 - - - - - 0.996 - - - ankyrin repeat and sterile alpha motif domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-041210-349]
96. RSBN1 RSBN1 599 0.996 - - - - - 0.996 - - -
97. erlin2 ENSDARG00000095968, ENSDARG00000110551 1023 0.996 - - - - - 0.996 - - - ER lipid raft associated 2 [Source:NCBI gene;Acc:100151163]
98. fntb ENSDARG00000027916 736 0.996 - - - - - 0.996 - - - farnesyltransferase, CAAX box, beta [Source:ZFIN;Acc:ZDB-GENE-030131-2220]
99. csrp2 ENSDARG00000011961 1003 0.996 - - - - - 0.996 - - - cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863]
100. tefa ENSDARG00000039117, ENSDARG00000109532 3065 0.996 - - - - - 0.996 - - - thyrotrophic embryonic factor a [Source:ZFIN;Acc:ZDB-GENE-990415-264]

There are 1312 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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