Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ndc1

Gene Name Gene ID Reads Annotation
ndc1 ENSDARG00000021120 2417 NDC1 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-7176]










Genes with expression patterns similar to ndc1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ndc1 ENSDARG00000021120 2417 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 NDC1 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-7176]
2. magt1 ENSDARG00000058062 3903 2.709 - - - - 0.938 - 0.804 - 0.967 magnesium transporter 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3667]
3. bcar3 ENSDARG00000016981 714 2.622 - - - - - 0.767 0.877 - 0.978 BCAR3, NSP family adaptor protein [Source:ZFIN;Acc:ZDB-GENE-080513-4]
4. etv4 ENSDARG00000018303, ENSDARG00000115855 3889 2.568 - - - - 0.919 - 0.861 - 0.788 ets variant 4 [Source:ZFIN;Acc:ZDB-GENE-990415-71]
5. CABZ01081749.1 CABZ01081749.1 637 2.404 - 0.710 - - - - 0.824 0.870 -
6. smg7 ENSDARG00000060767 2759 2.241 - 0.738 - 0.733 - - 0.770 - - SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
7. rint1 ENSDARG00000005547 898 1.898 - - - - - - - 0.922 0.976 RAD50 interactor 1 [Source:ZFIN;Acc:ZDB-GENE-041210-174]
8. pdia4 ENSDARG00000018491 1914 1.89 - - - - 0.960 - - 0.930 - protein disulfide isomerase family A, member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5493]
9. chrac1 ENSDARG00000042337 2590 1.829 - - - - 0.955 - 0.874 - - chromatin accessibility complex 1 [Source:ZFIN;Acc:ZDB-GENE-050227-18]
10. gli3 ENSDARG00000052131 986 1.804 - - - - - - 0.822 - 0.982 GLI family zinc finger 3 [Source:ZFIN;Acc:ZDB-GENE-041111-162]
11. pdcd11 ENSDARG00000052480 2791 1.804 - - - - 0.947 - - 0.857 - programmed cell death 11 [Source:ZFIN;Acc:ZDB-GENE-030131-4076]
12. sdad1 ENSDARG00000105117 2819 1.798 - - - - 0.960 - - 0.838 - SDA1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-021213-1]
13. sh3bgrl3 ENSDARG00000098075 3071 1.796 - - - - - - - 0.813 0.983 SH3 domain binding glutamate-rich protein like 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1059]
14. prp19 prp19 4804 1.792 - - - - - - 0.876 - 0.916
15. surf4l ENSDARG00000035131 3648 1.79 - - - - 0.938 - - - 0.852 surfeit gene 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-172]
16. phf16 phf16 1116 1.783 - - - - - - 0.846 0.937 -
17. ZNF70_2 ZNF70_2 1866 1.764 - - - - 0.967 - 0.797 - -
18. pggt1b ENSDARG00000103464 441 1.76 - - - - - - 0.836 0.924 - protein geranylgeranyltransferase type I, beta subunit [Source:ZFIN;Acc:ZDB-GENE-050913-85]
19. cept1a ENSDARG00000058716 1686 1.757 - - - - - 0.784 - - 0.973 choline/ethanolamine phosphotransferase 1a [Source:ZFIN;Acc:ZDB-GENE-081105-47]
20. luc7l3 ENSDARG00000014366 4416 1.756 - - - - 0.947 - 0.809 - - LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
21. C2CD2 ENSDARG00000105000 2573 1.749 - - - - - - - 0.775 0.974 C2 calcium-dependent domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-110728-1]
22. qrich1 ENSDARG00000019797, ENSDARG00000111720, ENSDARG00000113429 1177 1.748 - - - - - - 0.771 - 0.977 glutamine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8204]
23. TRHDE_1 TRHDE_1 102 1.742 - - - - - - 0.822 0.920 -
24. hgd ENSDARG00000058005 437 1.732 - - - - - 0.764 - - 0.968 homogentisate 1,2-dioxygenase [Source:ZFIN;Acc:ZDB-GENE-020802-5]
25. arhgef25b ENSDARG00000014465 669 1.73 - - - - - - 0.753 - 0.977 Rho guanine nucleotide exchange factor (GEF) 25b [Source:ZFIN;Acc:ZDB-GENE-080225-17]
26. rfc5 ENSDARG00000035634 974 1.727 - - - - - - 0.867 0.860 - replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1]
27. arfgef2 ENSDARG00000074702 1593 1.717 - - - - - - 0.735 - 0.982 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) [Source:ZFIN;Acc:ZDB-GENE-090312-50]
28. zfand1 ENSDARG00000009178, ENSDARG00000114617 1192 1.716 - - - - 0.961 - - 0.755 - zinc finger, AN1-type domain 1 [Source:ZFIN;Acc:ZDB-GENE-040801-269]
29. galnt12 ENSDARG00000055490 1653 1.713 - - - - - - 0.743 - 0.970 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 [Source:ZFIN;Acc:ZDB-GENE-060503-704]
30. DST ENSDARG00000101858 4395 1.712 - - - - - - 0.855 0.857 - dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
31. CCDC106 CCDC106 1908 1.712 - - - - 0.966 - 0.746 - -
32. pitpnb ENSDARG00000036005 513 1.71 - - - - - - 0.811 0.899 - phosphatidylinositol transfer protein, beta [Source:ZFIN;Acc:ZDB-GENE-040426-895]
33. CU929119.2 CU929119.2 859 1.709 - - - - - - 0.828 0.881 -
34. glmna ENSDARG00000058267 597 1.707 - - - - - - 0.726 - 0.981 glomulin, FKBP associated protein a [Source:ZFIN;Acc:ZDB-GENE-041114-120]
35. klhl11 ENSDARG00000045130 800 1.707 - - - - - - 0.739 - 0.968 kelch-like family member 11 [Source:ZFIN;Acc:ZDB-GENE-030131-5524]
36. CABZ01088061.1 CABZ01088061.1 695 1.701 - - - - - - 0.807 0.894 -
37. dnajc5ab ENSDARG00000004836 2923 1.701 - 0.828 - - - - 0.873 - - DnaJ (Hsp40) homolog, subfamily C, member 5ab [Source:ZFIN;Acc:ZDB-GENE-081021-2]
38. rspry1 ENSDARG00000062558 1424 1.693 - - - - - - 0.767 0.926 - ring finger and SPRY domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061026-2]
39. eif4g3b ENSDARG00000074331, ENSDARG00000116386 1155 1.688 - 0.796 - - - - 0.892 - - eukaryotic translation initiation factor 4 gamma, 3b [Source:ZFIN;Acc:ZDB-GENE-090312-49]
40. ube2c ENSDARG00000101618, ENSDARG00000114670 5271 1.687 - - - - - - 0.869 - 0.818 ubiquitin-conjugating enzyme E2C [Source:ZFIN;Acc:ZDB-GENE-051030-48]
41. phf21ab ENSDARG00000021378 1706 1.686 0.844 - - - - - - 0.842 - PHD finger protein 21Ab [Source:ZFIN;Acc:ZDB-GENE-030131-6456]
42. ajuba ENSDARG00000077842 1152 1.686 - - - - - - 0.716 - 0.970 ajuba LIM protein [Source:ZFIN;Acc:ZDB-GENE-030131-9341]
43. hyal2 hyal2 2205 1.684 0.704 - - - - - - - 0.980
44. mbd3a ENSDARG00000061774 4047 1.682 - - - - 0.932 0.750 - - - methyl-CpG binding domain protein 3a [Source:ZFIN;Acc:ZDB-GENE-030131-9077]
45. pou2f1b ENSDARG00000007996 2172 1.679 - - - - 0.961 0.718 - - - POU class 2 homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2422]
46. znf598 ENSDARG00000014945 1838 1.676 - - - 0.748 - - - 0.928 - zinc finger protein 598 [Source:ZFIN;Acc:ZDB-GENE-060602-3]
47. arpp19a ENSDARG00000032532, ENSDARG00000109679 5102 1.675 - 0.739 - - - - - - 0.936 cAMP-regulated phosphoprotein 19a [Source:ZFIN;Acc:ZDB-GENE-040426-1281]
48. CABZ01103862.1 ENSDARG00000109235 3223 1.673 - - - - - - 0.734 - 0.939
49. chsy1 ENSDARG00000079027 455 1.661 - - - - - - 0.824 0.837 - chondroitin sulfate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3127]
50. aldh18a1 ENSDARG00000099579 2185 1.656 - - - - - - 0.736 - 0.920 aldehyde dehydrogenase 18 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-030131-5602]
51. kifc1 ENSDARG00000001558 6658 1.656 - - - - 0.928 - - 0.728 - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
52. BX569781.3 BX569781.3 576 1.653 - - - - - - 0.832 0.821 -
53. ap2m1a ENSDARG00000002790 9781 1.652 - 0.753 - - 0.899 - - - - adaptor related protein complex 2 subunit mu 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9784]
54. PHLDB1 PHLDB1 3821 1.648 - - - - 0.938 - 0.710 - -
55. gpx7 ENSDARG00000091511 3045 1.642 - - - - - - 0.861 - 0.781 glutathione peroxidase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-419]
56. golph3 ENSDARG00000052851, ENSDARG00000109334 2114 1.633 - 0.832 - - - - 0.801 - - golgi phosphoprotein 3 [Source:ZFIN;Acc:ZDB-GENE-041010-209]
57. u2af2a ENSDARG00000012505 2920 1.632 - 0.710 - - - - 0.922 - - U2 small nuclear RNA auxiliary factor 2a [Source:ZFIN;Acc:ZDB-GENE-050706-131]
58. usp40 ENSDARG00000071197 825 1.632 - - - 0.758 - - - 0.874 - ubiquitin specific peptidase 40 [Source:ZFIN;Acc:ZDB-GENE-060518-5]
59. gpsm2 ENSDARG00000017311, ENSDARG00000113810 1001 1.631 - - - - - - 0.816 0.815 - G protein signaling modulator 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1169]
60. FBXO33 ENSDARG00000075400 1164 1.625 - - - - - 0.762 - 0.863 - F-box protein 33 [Source:ZFIN;Acc:ZDB-GENE-100618-2]
61. msh2 ENSDARG00000018022, ENSDARG00000115185 1301 1.618 - - - - - 0.718 - 0.900 - mutS homolog 2 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-040426-2932]
62. gulp1b ENSDARG00000057833 382 1.609 - - - 0.703 - - - 0.906 - GULP, engulfment adaptor PTB domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-120228-2]
63. stk16 ENSDARG00000037777 255 1.609 - - - - - - 0.785 0.824 - serine/threonine kinase 16 [Source:ZFIN;Acc:ZDB-GENE-050417-102]
64. ints12 ENSDARG00000091678 3261 1.609 - - - 0.774 - - 0.835 - - integrator complex subunit 12 [Source:ZFIN;Acc:ZDB-GENE-040625-178]
65. pou3f3a ENSDARG00000042032 2835 1.601 - - - - 0.726 - - 0.875 - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
66. CABZ01028770.1 ENSDARG00000099506 700 1.599 - 0.719 - - - - 0.880 - - ras-related C3 botulinum toxin substrate 1-like [Source:NCBI gene;Acc:100537765]
67. lin54 ENSDARG00000063194 2583 1.595 - 0.703 - - - - - 0.892 - lin-54 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-060929-440]
68. aebp1 ENSDARG00000091726 906 1.587 - 0.715 - - - - 0.872 - - AE binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2390]
69. tsn ENSDARG00000041830, ENSDARG00000111147 1268 1.583 - - - 0.756 - 0.827 - - - translin [Source:ZFIN;Acc:ZDB-GENE-030131-6039]
70. si:ch211-11k18.4 ENSDARG00000087869 3298 1.583 - - - - - - 0.743 - 0.840 si:ch211-11k18.4 [Source:ZFIN;Acc:ZDB-GENE-070912-22]
71. h2afx ENSDARG00000029406 2116 1.578 - - - - - 0.725 - 0.853 - H2A histone family, member X [Source:ZFIN;Acc:ZDB-GENE-040426-987]
72. zc3h7b 2936 1.57 - - - - - - 0.761 - 0.809 zinc finger CCCH-type containing 7B
73. TRIO TRIO 1601 1.57 - - - - - - 0.730 0.840 -
74. pdp2 ENSDARG00000058571, ENSDARG00000115915 464 1.568 - - - - - - 0.741 0.827 - putative pyruvate dehydrogenase phosphatase isoenzyme 2 [Source:ZFIN;Acc:ZDB-GENE-000921-2]
75. arhgef4 ENSDARG00000012914 1464 1.566 - - - - - 0.787 - 0.779 - Rho guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-575]
76. imp4 ENSDARG00000054540 1396 1.564 - 0.759 - - - - 0.805 - - IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-474]
77. yeats4 ENSDARG00000045874 1168 1.561 - - - - - 0.796 - 0.765 - YEATS domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040718-252]
78. trrap ENSDARG00000100623 3429 1.56 0.779 - - - - - 0.781 - - transformation/transcription domain-associated protein [Source:ZFIN;Acc:ZDB-GENE-050809-47]
79. srrm1 ENSDARG00000001244 4972 1.559 - - - - 0.808 0.751 - - - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
80. ube2g1b ENSDARG00000069527 5376 1.559 - - - - - 0.738 0.821 - - ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2939]
81. polr2gl ENSDARG00000056127 1771 1.559 0.742 - - - - - 0.817 - - polymerase (RNA) II (DNA directed) polypeptide G-like [Source:ZFIN;Acc:ZDB-GENE-030131-2808]
82. ppp1r2 ENSDARG00000054007 1585 1.554 - 0.791 - - - - 0.763 - - protein phosphatase 1, regulatory (inhibitor) subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1814]
83. hnrpkl ENSDARG00000007034 4660 1.551 - 0.728 - - - - - - 0.823 heterogeneous nuclear ribonucleoprotein K, like [Source:ZFIN;Acc:ZDB-GENE-040426-1923]
84. bmi1b ENSDARG00000013076 1020 1.55 - - - - - - 0.766 0.784 - bmi1 polycomb ring finger oncogene 1b [Source:ZFIN;Acc:ZDB-GENE-040116-4]
85. azi1_1 azi1_1 1375 1.549 - - - 0.744 - - 0.805 - -
86. nucb1 ENSDARG00000054833 2009 1.546 - - - 0.705 - 0.841 - - - nucleobindin 1 [Source:ZFIN;Acc:ZDB-GENE-060825-222]
87. hsdl1 ENSDARG00000041736 171 1.546 - - - - - 0.718 0.828 - - hydroxysteroid dehydrogenase like 1 [Source:ZFIN;Acc:ZDB-GENE-041212-31]
88. pdcd10a ENSDARG00000035054, ENSDARG00000109378 2227 1.542 - 0.731 - - - - 0.811 - - programmed cell death 10a [Source:ZFIN;Acc:ZDB-GENE-040426-1432]
89. tlr7 ENSDARG00000068812, ENSDARG00000075685 30 1.542 - - - - - 0.731 0.811 - - toll-like receptor 7 [Source:ZFIN;Acc:ZDB-GENE-040219-11]
90. zgc:174651 zgc:174651 90 1.539 - - - - - 0.719 0.820 - -
91. fkbp9 ENSDARG00000005023 17518 1.538 - 0.719 - - - - - - 0.819 FK506 binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-040801-23]
92. btbd10a ENSDARG00000062674 1144 1.533 - 0.709 - - - - 0.824 - - BTB (POZ) domain containing 10a [Source:ZFIN;Acc:ZDB-GENE-070410-41]
93. dnaja3a ENSDARG00000058494, ENSDARG00000111151 2497 1.528 - 0.772 - - - - - 0.756 - DnaJ (Hsp40) homolog, subfamily A, member 3A [Source:ZFIN;Acc:ZDB-GENE-030131-7837]
94. fgfr1op ENSDARG00000003058 449 1.527 - 0.739 - - - - 0.788 - - FGFR1 oncogene partner [Source:ZFIN;Acc:ZDB-GENE-090417-1]
95. ikbkb ENSDARG00000079123 498 1.525 - - - - - 0.761 - 0.764 - inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta [Source:ZFIN;Acc:ZDB-GENE-071115-2]
96. puf60b ENSDARG00000001241 13827 1.516 - 0.714 - - 0.802 - - - - poly-U binding splicing factor b [Source:ZFIN;Acc:ZDB-GENE-040625-116]
97. tbl1xr1a ENSDARG00000058696 5439 1.513 0.721 0.792 - - - - - - - transducin (beta)-like 1 X-linked receptor 1a [Source:ZFIN;Acc:ZDB-GENE-050522-314]
98. osbpl10 osbpl10 836 1.507 - - - - - 0.761 0.746 - -
99. gins2 ENSDARG00000002304 1187 1.506 - - - 0.722 - - 0.784 - - GINS complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050419-19]
100. lin37 ENSDARG00000053950 1003 1.504 - - - - - 0.754 0.750 - - lin-37 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-050417-446]

There are 1776 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA