Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ncl1

Gene Name Gene ID Reads Annotation
ncl1 2835 nicalin, transcript variant X3










Genes with expression patterns similar to ncl1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ncl1 2835 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 nicalin, transcript variant X3
2. si:ch1073-325m22.2 ENSDARG00000095921 8534 2.24 - 0.711 - - - 0.771 0.758 - - si:ch1073-325m22.2 [Source:NCBI gene;Acc:100333135]
3. hsbp1b ENSDARG00000041921 6170 1.776 - 0.821 - - - - - - 0.955 heat shock factor binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1721]
4. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.72 - - - - - - 0.758 - 0.962 paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
5. SPEN ENSDARG00000074245, ENSDARG00000116696 1412 1.715 - 0.732 - - - - - - 0.983 spen family transcriptional repressor [Source:ZFIN;Acc:ZDB-GENE-050309-70]
6. grsf1 ENSDARG00000053021 2752 1.706 - 0.731 - - - - - - 0.975 G-rich RNA sequence binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-060825-196]
7. ndufab1b ENSDARG00000014915 12796 1.705 - 0.777 - - - - - - 0.928 NADH:ubiquinone oxidoreductase subunit AB1b [Source:ZFIN;Acc:ZDB-GENE-030131-4437]
8. rpa1 ENSDARG00000003938 4403 1.7 - - - - - 0.742 - - 0.958 replication protein A1 [Source:ZFIN;Acc:ZDB-GENE-030912-3]
9. selm 2395 1.697 - - - - - - 0.782 - 0.915 selenoprotein M
10. sra1 ENSDARG00000053619 2799 1.68 - - - - - - 0.716 - 0.964 steroid receptor RNA activator 1 [Source:ZFIN;Acc:ZDB-GENE-040625-6]
11. slc2a15a ENSDARG00000029894 2674 1.68 - - - - - - 0.703 - 0.977 solute carrier family 2 (facilitated glucose transporter), member 15a [Source:ZFIN;Acc:ZDB-GENE-060531-109]
12. nap1l4b ENSDARG00000068868 3285 1.676 - - - - - - - 0.709 0.967 nucleosome assembly protein 1-like 4b [Source:ZFIN;Acc:ZDB-GENE-041114-168]
13. TMPO TMPO 3264 1.647 - - - - - - 0.758 - 0.889
14. ywhag2 ENSDARG00000071658, ENSDARG00000116741 3326 1.647 - - - - - - 0.708 - 0.939 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-061023-2]
15. cpsf3 ENSDARG00000027649 6897 1.644 - - - - - - 0.745 - 0.899 cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
16. kpna3 ENSDARG00000052641 5347 1.633 - 0.722 - - - - - - 0.911 karyopherin alpha 3 (importin alpha 4) [Source:ZFIN;Acc:ZDB-GENE-030616-541]
17. lepre1 lepre1 5346 1.617 - 0.721 - - - - - - 0.896
18. rpl37 ENSDARG00000034291, ENSDARG00000076360 13668 1.597 - - - - - - 0.857 - 0.740 ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
19. akap12b ENSDARG00000055678, ENSDARG00000110544 8317 1.575 - 0.702 - - - - - - 0.873 A kinase (PRKA) anchor protein 12b [Source:ZFIN;Acc:ZDB-GENE-030131-9753]
20. ccdc47 ENSDARG00000054362 5970 1.565 - 0.804 - - - - 0.761 - - coiled-coil domain containing 47 [Source:ZFIN;Acc:ZDB-GENE-040912-15]
21. eif3jb ENSDARG00000053370 1776 1.56 - 0.820 - - - - 0.740 - - eukaryotic translation initiation factor 3, subunit Jb [Source:ZFIN;Acc:ZDB-GENE-040426-2900]
22. eif2s2 ENSDARG00000053047 15904 1.555 - - - - - 0.712 0.843 - - eukaryotic translation initiation factor 2, subunit 2 beta [Source:ZFIN;Acc:ZDB-GENE-030131-3085]
23. fermt2 ENSDARG00000020242 9351 1.538 - - - - - 0.717 - - 0.821 fermitin family member 2 [Source:ZFIN;Acc:ZDB-GENE-050506-132]
24. nipblb ENSDARG00000061052 6109 1.536 - 0.772 - - - - 0.764 - - nipped-B homolog b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6070]
25. hist2h2l ENSDARG00000068996, ENSDARG00000112150 10411 1.532 - 0.706 - - - - 0.826 - - histone 2, H2, like [Source:ZFIN;Acc:ZDB-GENE-031118-36]
26. eif4h ENSDARG00000042252 6742 1.519 - 0.702 - - - - 0.817 - - eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
27. capza1b ENSDARG00000056090, ENSDARG00000109842, ENSDARG00000110402 12199 1.512 - 0.739 - - - - 0.773 - - capping actin protein of muscle Z-line subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-031002-24]
28. acsbg2 ENSDARG00000004094 2445 1.512 - 0.806 - - - 0.706 - - - acyl-CoA synthetase bubblegum family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7099]
29. snoU83B snoU83B 4666 1.506 - - - - - 0.751 0.755 - -
30. trap1 ENSDARG00000024317, ENSDARG00000114173 2189 1.501 - - - - - 0.768 0.733 - - TNF receptor-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4257]
31. gpx7 ENSDARG00000091511 3045 1.499 - 0.797 - - - - 0.702 - - glutathione peroxidase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-419]
32. crkl ENSDARG00000028699 2966 1.495 - - - - - - 0.716 0.779 - v-crk avian sarcoma virus CT10 oncogene homolog-like [Source:ZFIN;Acc:ZDB-GENE-040426-2951]
33. CDIP1 ENSDARG00000076118 1294 1.493 - 0.721 - - - - 0.772 - - cell death-inducing p53 target 1 [Source:ZFIN;Acc:ZDB-GENE-070720-18]
34. nudt3a ENSDARG00000016256 2713 1.492 - - - - - - 0.735 0.757 - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
35. pfdn6 ENSDARG00000037108 2083 1.492 - - - - - 0.724 0.768 - - prefoldin subunit 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1589]
36. ndufa5 ENSDARG00000039346 2617 1.483 - - - - - 0.727 - 0.756 - NADH:ubiquinone oxidoreductase subunit A5 [Source:ZFIN;Acc:ZDB-GENE-050320-17]
37. rps8a ENSDARG00000055996 2785 1.482 - 0.760 - - - - 0.722 - - ribosomal protein S8a [Source:ZFIN;Acc:ZDB-GENE-030131-8626]
38. ndufs6 ENSDARG00000056583 7220 1.475 - - - - - 0.717 0.758 - - NADH:ubiquinone oxidoreductase subunit S6 [Source:ZFIN;Acc:ZDB-GENE-040912-86]
39. rab5if ENSDARG00000074790 8807 1.468 - 0.718 - - - - 0.750 - - RAB5 interacting factor [Source:ZFIN;Acc:ZDB-GENE-030131-5938]
40. taf10 ENSDARG00000068641 3333 1.466 - 0.701 - - - - 0.765 - - TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-060526-334]
41. SNRPG ENSDARG00000099667 18697 1.461 - 0.709 - - - - 0.752 - - small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
42. si:dkeyp-13a3.7 si:dkeyp-13a3.7 3422 1.459 - 0.741 - - - 0.718 - - -
43. celf2 ENSDARG00000002131, ENSDARG00000110267 15605 1.45 - 0.729 - - - - 0.721 - - cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
44. mrpl37 ENSDARG00000062916 1600 1.448 - 0.738 - - - - 0.710 - - mitochondrial ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-050309-20]
45. MRPS12_1 MRPS12_1 2714 1.447 - 0.716 - - - - 0.731 - -
46. nup98 ENSDARG00000074955 3998 1.444 - 0.741 - - - - - 0.703 - nucleoporin 98 [Source:ZFIN;Acc:ZDB-GENE-040426-1180]
47. stau1 ENSDARG00000044182, ENSDARG00000115476 6121 1.438 - 0.729 - - - - 0.709 - - staufen double-stranded RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6372]
48. ndufa1 ENSDARG00000036329, ENSDARG00000111888 18361 1.438 - - - - - 0.716 0.722 - - NADH:ubiquinone oxidoreductase subunit A1 [Source:ZFIN;Acc:ZDB-GENE-040625-168]
49. fat1 fat1 3934 1.436 - 0.721 - - - - 0.715 - -
50. mical3a ENSDARG00000021979, ENSDARG00000097017 1790 1.427 - - - - - 0.711 0.716 - - microtubule associated monooxygenase, calponin and LIM domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-050126-2]
51. mt-nd4l ENSDARG00000063916 2229 1.417 - 0.703 - - - - 0.714 - - NADH dehydrogenase 4L, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-11]
52. rps25 ENSDARG00000041811 52182 1.415 - - - - - 0.713 0.702 - - ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-040426-1788]
53. C13H10orf71 3489 1.413 - - - - - 0.701 0.712 - - chromosome 13 C10orf71 homolog
54. psma2 ENSDARG00000040121 2504 1.405 - - - - - 0.701 0.704 - - proteasome subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-050522-479]
55. GPR108 ENSDARG00000096651 1734 0.986 - - - - - - - - 0.986 G protein-coupled receptor 108 [Source:ZFIN;Acc:ZDB-GENE-121214-129]
56. adprhl2 ENSDARG00000019338, ENSDARG00000110712 652 0.986 - - - - - - - - 0.986 ADP-ribosylhydrolase like 2 [Source:ZFIN;Acc:ZDB-GENE-040912-85]
57. TRIO TRIO 1601 0.985 - - - - - - - - 0.985
58. git2b ENSDARG00000042791, ENSDARG00000111846 1332 0.985 - - - - - - - - 0.985 G protein-coupled receptor kinase interacting ArfGAP 2b [Source:ZFIN;Acc:ZDB-GENE-070112-2192]
59. rhot1a ENSDARG00000099996 2059 0.984 - - - - - - - - 0.984 ras homolog family member T1a [Source:ZFIN;Acc:ZDB-GENE-030131-5354]
60. SURF2 ENSDARG00000112476 592 0.984 - - - - - - - - 0.984 surfeit 2 [Source:ZFIN;Acc:ZDB-GENE-040801-86]
61. TRMT10A ENSDARG00000036678 621 0.984 - - - - - - - - 0.984 tRNA methyltransferase 10A [Source:ZFIN;Acc:ZDB-GENE-130530-594]
62. nt5c1bb ENSDARG00000033742 1248 0.984 - - - - - - - - 0.984 5'-nucleotidase, cytosolic IB b [Source:ZFIN;Acc:ZDB-GENE-030131-7205]
63. asphd2 ENSDARG00000059629 1005 0.984 - - - - - - - - 0.984 aspartate beta-hydroxylase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-061103-142]
64. rabif ENSDARG00000002690, ENSDARG00000114340 891 0.984 - - - - - - - - 0.984 RAB interacting factor [Source:ZFIN;Acc:ZDB-GENE-040718-216]
65. cbl ENSDARG00000009958 1321 0.983 - - - - - - - - 0.983 Cbl proto-oncogene, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-041114-207]
66. tsc22d2 ENSDARG00000041839 1109 0.983 - - - - - - - - 0.983 TSC22 domain family 2 [Source:ZFIN;Acc:ZDB-GENE-031001-12]
67. otub1a ENSDARG00000055536 2892 0.983 - - - - - - - - 0.983 OTU deubiquitinase, ubiquitin aldehyde binding 1a [Source:ZFIN;Acc:ZDB-GENE-040718-108]
68. dpp3 ENSDARG00000020676 2393 0.983 - - - - - - - - 0.983 dipeptidyl-peptidase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1247]
69. ccdc22 ENSDARG00000052379 2276 0.983 - - - - - - - - 0.983 coiled-coil domain containing 22 [Source:ZFIN;Acc:ZDB-GENE-050913-93]
70. hint2 ENSDARG00000100938 1053 0.983 - - - - - - - - 0.983 histidine triad nucleotide binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070410-139]
71. KIF20B KIF20B 800 0.983 - - - - - - - - 0.983
72. zgc:85777 ENSDARG00000027009, ENSDARG00000112673 1499 0.983 - - - - - - - - 0.983 zgc:85777 [Source:ZFIN;Acc:ZDB-GENE-040426-2210]
73. SENP7 SENP7 1097 0.983 - - - - - - - - 0.983
74. homer3 homer3 1974 0.983 - - - - - - - - 0.983
75. exoc3 ENSDARG00000014582, ENSDARG00000114378, ENSDARG00000117037 1155 0.982 - - - - - - - - 0.982 exocyst complex component 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5947]
76. gnb1b ENSDARG00000104372 1077 0.982 - - - - - - - - 0.982 guanine nucleotide binding protein (G protein), beta polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2855]
77. im:7136729 im:7136729 1625 0.982 - - - - - - - - 0.982
78. gstm3 gstm3 1164 0.982 - - - - - - - - 0.982
79. tfdp1b ENSDARG00000016304 3071 0.982 - - - - - - - - 0.982 transcription factor Dp-1, b [Source:ZFIN;Acc:ZDB-GENE-040426-1746]
80. si:ch211-10d23.5 ENSDARG00000095510 2632 0.982 - - - - - - - - 0.982 si:ch211-10d23.5 [Source:ZFIN;Acc:ZDB-GENE-090313-10]
81. nol10 ENSDARG00000020077 984 0.982 - - - - - - - - 0.982 nucleolar protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-764]
82. epb41l5 ENSDARG00000032324, ENSDARG00000114579 1610 0.982 - - - - - - - - 0.982 erythrocyte membrane protein band 4.1 like 5 [Source:ZFIN;Acc:ZDB-GENE-030616-450]
83. ARAP2 ARAP2 428 0.981 - - - - - - - - 0.981
84. si:ch211-191j22.3 ENSDARG00000095459 959 0.981 - - - - - - - - 0.981 si:ch211-191j22.3 [Source:ZFIN;Acc:ZDB-GENE-030131-4242]
85. rhogd ENSDARG00000030608, ENSDARG00000112157 599 0.981 - - - - - - - - 0.981 ras homolog gene family, member Gd [Source:ZFIN;Acc:ZDB-GENE-040426-1504]
86. ndst2a ENSDARG00000086269 754 0.981 - - - - - - - - 0.981 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a [Source:ZFIN;Acc:ZDB-GENE-060810-182]
87. utp11l ENSDARG00000039958, ENSDARG00000109895 1509 0.981 - - - - - - - - 0.981 UTP11-like, U3 small nucleolar ribonucleoprotein (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-8093]
88. klhdc4 ENSDARG00000100206, ENSDARG00000113735 2362 0.981 - - - - - - - - 0.981 kelch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-2057]
89. lmo2 ENSDARG00000095019 1098 0.981 - - - - - - - - 0.981 LIM domain only 2 (rhombotin-like 1) [Source:ZFIN;Acc:ZDB-GENE-980526-419]
90. gli2b ENSDARG00000020884 1468 0.981 - - - - - - - - 0.981 GLI family zinc finger 2b [Source:ZFIN;Acc:ZDB-GENE-050523-1]
91. bcl9 ENSDARG00000036687 1124 0.981 - - - - - - - - 0.981 B cell CLL/lymphoma 9 [Source:ZFIN;Acc:ZDB-GENE-090313-135]
92. magi1b ENSDARG00000003169 2056 0.98 - - - - - - - - 0.980 membrane associated guanylate kinase, WW and PDZ domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5110]
93. smad2 ENSDARG00000006389 646 0.98 - - - - - - - - 0.980 SMAD family member 2 [Source:ZFIN;Acc:ZDB-GENE-990603-7]
94. nr1d4b ENSDARG00000059370 243 0.98 - - - - - - - - 0.980 nuclear receptor subfamily 1, group D, member 4b [Source:ZFIN;Acc:ZDB-GENE-080403-6]
95. pcloa ENSDARG00000063299 353 0.98 - - - - - - - - 0.980 piccolo presynaptic cytomatrix protein a [Source:ZFIN;Acc:ZDB-GENE-030131-8115]
96. zgc:112484 zgc:112484 780 0.979 - - - - - - - - 0.979
97. ITPA ENSDARG00000057529 493 0.979 - - - - - - - - 0.979 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) [Source:ZFIN;Acc:ZDB-GENE-070705-218]
98. syt4 ENSDARG00000036505 421 0.979 - - - - - - - - 0.979 synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
99. plekhg5a ENSDARG00000025902 397 0.979 - - - - - - - - 0.979 pleckstrin homology domain containing, family G (with RhoGef domain) member 5a [Source:ZFIN;Acc:ZDB-GENE-060503-766]
100. stxbp5b ENSDARG00000029234 760 0.979 - - - - - - - - 0.979 syntaxin binding protein 5b (tomosyn) [Source:ZFIN;Acc:ZDB-GENE-090821-5]

There are 746 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA