Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ncl

Gene Name Gene ID Reads Annotation
ncl ENSDARG00000002710 16951 nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]










Genes with expression patterns similar to ncl

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ncl ENSDARG00000002710 16951 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
2. stmn1a ENSDARG00000004169 21169 3.738 - 0.711 0.716 0.802 0.778 - - - 0.731 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
3. eif3ba ENSDARG00000059654 22960 2.978 0.755 - 0.757 - - 0.761 - - 0.705 eukaryotic translation initiation factor 3, subunit Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2748]
4. rtf1 ENSDARG00000008947 6596 2.509 - - - - - 0.721 0.997 - 0.791 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
5. tmco1 ENSDARG00000069099, ENSDARG00000113013 4698 2.483 - 0.740 - - - 0.746 0.997 - - transmembrane and coiled-coil domains 1 [Source:ZFIN;Acc:ZDB-GENE-050417-344]
6. EIF4G1 EIF4G1 19676 2.477 - - 0.834 - - 0.847 - - 0.796
7. DNAJA4 ENSDARG00000051762 5657 2.457 0.802 0.891 - - 0.764 - - - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
8. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 2.415 0.768 - - - 0.804 - - - 0.843 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
9. nop58 ENSDARG00000104353 8497 2.402 - 0.847 - - - 0.726 - - 0.829 NOP58 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2140]
10. ppp1r3ca ENSDARG00000071005, ENSDARG00000111817, ENSDARG00000112962 2641 2.377 0.753 0.847 - - 0.777 - - - - protein phosphatase 1, regulatory subunit 3Ca [Source:ZFIN;Acc:ZDB-GENE-040718-70]
11. adnpa ENSDARG00000062002, ENSDARG00000115617 2009 2.35 - - - - 0.810 - - 0.721 0.819 activity-dependent neuroprotector homeobox a [Source:ZFIN;Acc:ZDB-GENE-061215-112]
12. prmt1 ENSDARG00000010246 11311 2.338 - 0.821 0.709 0.808 - - - - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
13. apex1 ENSDARG00000045843 6345 2.332 - 0.772 0.720 - 0.840 - - - - APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
14. smc1al ENSDARG00000058203 8838 2.315 - 0.708 - - 0.792 - - - 0.815 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
15. smarca5 ENSDARG00000052348 15433 2.315 0.744 0.760 - - - - - - 0.811 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
16. ddx39ab ENSDARG00000015111 11619 2.256 - 0.714 0.784 - - - - - 0.758 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
17. ipo7 ENSDARG00000035751 7095 2.237 0.762 0.751 - - - - - - 0.724 importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
18. dcaf7 ENSDARG00000054355 3517 2.214 0.716 0.762 - - - - - - 0.736 ddb1 and cul4 associated factor 7 [Source:ZFIN;Acc:ZDB-GENE-030131-9511]
19. prpf38a ENSDARG00000039213, ENSDARG00000116046 1537 2.198 - 0.732 - - - 0.713 - - 0.753 pre-mRNA processing factor 38A [Source:ZFIN;Acc:ZDB-GENE-040801-225]
20. rab30 ENSDARG00000037884 1077 2.171 - 0.703 - - - - - 0.724 0.744 RAB30, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040718-250]
21. vcl vcl 6667 1.866 - 0.872 - - - - 0.994 - -
22. atp5h 18018 1.854 - 0.861 - - - - 0.993 - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, transcript variant X1
23. lepre1 lepre1 5346 1.828 - 0.832 - - - - 0.996 - -
24. lfng ENSDARG00000037879 11783 1.805 - - - - - - 0.996 - 0.809 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
25. pinx1 ENSDARG00000023532 4452 1.796 - - - 0.799 - - 0.997 - - PIN2 (TERF1) interacting telomerase inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-030515-2]
26. nop56 ENSDARG00000012820 15231 1.791 - 0.920 - - - 0.871 - - - NOP56 ribonucleoprotein homolog [Source:ZFIN;Acc:ZDB-GENE-040109-1]
27. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 1.786 - - - - 0.790 - 0.996 - - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
28. rnd3a ENSDARG00000076799 4705 1.773 - 0.776 - - - - 0.997 - - Rho family GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-010319-40]
29. hbbe2 ENSDARG00000045143, ENSDARG00000109554 5244 1.758 - 0.762 - - - - 0.996 - - hemoglobin beta embryonic-2 [Source:ZFIN;Acc:ZDB-GENE-040702-1]
30. SNORD33 SNORD33 3284 1.757 - 0.761 - - - - 0.996 - -
31. eif5a2 ENSDARG00000056186 43804 1.75 0.773 - - - - - 0.977 - - eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
32. SNORD72 SNORD72 4018 1.744 0.758 - - - - - 0.986 - -
33. ryr1a ENSDARG00000011422 2377 1.735 - 0.739 - - - - 0.996 - - ryanodine receptor 1a (skeletal) [Source:ZFIN;Acc:ZDB-GENE-020108-2]
34. ryr1b ENSDARG00000023797 5693 1.729 0.837 0.892 - - - - - - - ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
35. mybphb ENSDARG00000003081 5208 1.722 0.839 0.883 - - - - - - - myosin binding protein Hb [Source:ZFIN;Acc:ZDB-GENE-030131-9794]
36. hnrnpul1 ENSDARG00000040564 6550 1.722 - - - 0.944 - - - - 0.778 heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
37. ptprfb ENSDARG00000005754 7178 1.721 - - - - 0.725 - 0.996 - - protein tyrosine phosphatase, receptor type, f, b [Source:ZFIN;Acc:ZDB-GENE-060503-530]
38. pcif1 ENSDARG00000099084 2851 1.715 - - - - - - 0.997 - 0.718 PDX1 C-terminal inhibiting factor 1 [Source:ZFIN;Acc:ZDB-GENE-120920-2]
39. npm1a ENSDARG00000014329, ENSDARG00000113199 31910 1.701 - - - - - 0.852 - - 0.849 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
40. rif1 ENSDARG00000062650, ENSDARG00000110568 1751 1.7 - - - - - - 0.996 - 0.704 replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
41. SNRPG ENSDARG00000099667 18697 1.691 - 0.894 - - - - - - 0.797 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
42. hbbe1.1 ENSDARG00000113599 64815 1.691 - 0.751 - - - - 0.940 - - hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
43. vdac1 ENSDARG00000045132 8051 1.674 - - - 0.954 - - - 0.720 - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
44. cct5 ENSDARG00000045399 11572 1.668 - 0.912 0.756 - - - - - - chaperonin containing TCP1, subunit 5 (epsilon) [Source:ZFIN;Acc:ZDB-GENE-030131-977]
45. hmgb2b ENSDARG00000053990 11519 1.663 - - - 0.813 - - - - 0.850 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
46. zgc:158296 ENSDARG00000070923 3935 1.649 0.814 0.835 - - - - - - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
47. zgc:66479 ENSDARG00000008732 3347 1.648 0.806 0.842 - - - - - - - zgc:66479 [Source:ZFIN;Acc:ZDB-GENE-031030-10]
48. g3bp1 ENSDARG00000017741 7622 1.647 - 0.877 - - - - - - 0.770 GTPase activating protein (SH3 domain) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7452]
49. rpl37 ENSDARG00000034291, ENSDARG00000076360 13668 1.647 - - - 0.942 - 0.705 - - - ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
50. LYAR ENSDARG00000098507 1506 1.646 - 0.708 - 0.938 - - - - - Ly1 antibody reactive homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-040426-1414]
51. creb1a ENSDARG00000053586 5068 1.645 - - - 0.807 - - - - 0.838 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
52. kpnb1 ENSDARG00000104889 9282 1.642 - - - - 0.829 - - - 0.813 karyopherin (importin) beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2579]
53. pygmb ENSDARG00000013317 5454 1.64 0.766 0.874 - - - - - - - phosphorylase, glycogen, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-1206]
54. hmbsa ENSDARG00000008840 2601 1.639 - 0.846 - - - 0.793 - - - hydroxymethylbilane synthase a [Source:ZFIN;Acc:ZDB-GENE-040426-1375]
55. HNRNPAB HNRNPAB 22267 1.637 - - - - 0.831 - - - 0.806
56. atp5d 20825 1.636 0.841 0.795 - - - - - - - ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
57. nnt ENSDARG00000023536 7357 1.629 - 0.784 - - - 0.845 - - - nicotinamide nucleotide transhydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-2592]
58. gap43 ENSDARG00000099744 4114 1.626 - - - - - - - 0.785 0.841 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
59. snrnp70 ENSDARG00000077126 5921 1.623 - 0.814 - - 0.809 - - - - small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
60. foxc1b ENSDARG00000055398 1499 1.623 - 0.826 - - 0.797 - - - - forkhead box C1b [Source:ZFIN;Acc:ZDB-GENE-010302-2]
61. slc4a1a ENSDARG00000012881 8972 1.62 - 0.884 - - 0.736 - - - - solute carrier family 4 (anion exchanger), member 1a (Diego blood group) [Source:ZFIN;Acc:ZDB-GENE-010525-1]
62. myef2 ENSDARG00000059398 6050 1.62 - 0.829 - - - - - - 0.791 myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
63. eif4h ENSDARG00000042252 6742 1.614 - 0.775 - - - - - - 0.839 eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
64. u2af1 ENSDARG00000015325 3217 1.613 - 0.826 - - - - - - 0.787 U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
65. prps1b ENSDARG00000037506, ENSDARG00000110507 4170 1.612 - - - - 0.824 - - - 0.788 phosphoribosyl pyrophosphate synthetase 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4011]
66. supt16h ENSDARG00000079949 4755 1.61 - - - 0.810 0.800 - - - - SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
67. mapre1b ENSDARG00000002659 9119 1.61 - - - 0.794 - - - - 0.816 microtubule-associated protein, RP/EB family, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2256]
68. hspd1 ENSDARG00000056160 13690 1.603 0.852 - - - - 0.751 - - - heat shock 60 protein 1 [Source:ZFIN;Acc:ZDB-GENE-021206-1]
69. rbm8a ENSDARG00000016516 8789 1.603 0.778 - - - - 0.825 - - - RNA binding motif protein 8A [Source:ZFIN;Acc:ZDB-GENE-050306-51]
70. mrpl35 ENSDARG00000070589 1773 1.602 - 0.773 - - - 0.829 - - - mitochondrial ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-060929-1082]
71. nono ENSDARG00000020482, ENSDARG00000115783 12482 1.6 - 0.771 - - - - - - 0.829 non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
72. eftud2 ENSDARG00000012261 3081 1.597 - 0.804 - - - - - - 0.793 elongation factor Tu GTP binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1569]
73. wu:fb17g07 wu:fb17g07 10567 1.597 - 0.803 - 0.794 - - - - -
74. arpp21 ENSDARG00000061081 892 1.596 - 0.839 - - - 0.757 - - - cAMP-regulated phosphoprotein, 21 [Source:ZFIN;Acc:ZDB-GENE-081104-296]
75. eif2s1a ENSDARG00000005827 5992 1.596 - 0.765 - - - - - - 0.831 eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
76. COL22A1 COL22A1 4473 1.596 - 0.816 - 0.780 - - - - -
77. TAF15 ENSDARG00000070019 5102 1.592 - - - - - - - 0.761 0.831 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
78. ddx18 ENSDARG00000030789 3631 1.592 - 0.741 - - - - - - 0.851 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:ZFIN;Acc:ZDB-GENE-030131-9685]
79. ccdc47 ENSDARG00000054362 5970 1.588 0.735 0.853 - - - - - - - coiled-coil domain containing 47 [Source:ZFIN;Acc:ZDB-GENE-040912-15]
80. tmsb ENSDARG00000054911 6411 1.585 - 0.847 - - - - - - 0.738 thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
81. cdkn2aipnl ENSDARG00000053395 5107 1.585 - 0.873 - - - 0.712 - - - CDKN2A interacting protein N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041010-154]
82. rars ENSDARG00000054530 1495 1.584 - 0.783 - 0.801 - - - - - arginyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9014]
83. nucks1b ENSDARG00000012777 4468 1.583 - - - 0.811 - 0.772 - - - nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
84. srm ENSDARG00000055760 6572 1.581 - - - 0.802 - 0.779 - - - spermidine synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1183]
85. eif4ebp1 ENSDARG00000043608, ENSDARG00000113927 9982 1.58 - 0.875 - - - 0.705 - - - eukaryotic translation initiation factor 4E binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2332]
86. hnrpl 6412 1.578 0.786 - - - - - - - 0.792 heterogeneous nuclear ribonucleoprotein L, transcript variant X1
87. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.577 0.740 - - - - - - - 0.837 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
88. rps11 ENSDARG00000053058 16233 1.576 - - - - 0.752 0.824 - - - ribosomal protein S11 [Source:ZFIN;Acc:ZDB-GENE-040426-2701]
89. dla ENSDARG00000010791 9281 1.575 - - - 0.819 - - - - 0.756 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
90. atp5mf ENSDARG00000037867 11052 1.574 0.827 0.747 - - - - - - - ATP synthase membrane subunit f [Source:ZFIN;Acc:ZDB-GENE-050309-87]
91. lppr3a lppr3a 1294 1.573 - - - - - - - 0.741 0.832
92. hfe2 4113 1.572 - 0.848 - - - 0.724 - - - hemochromatosis type 2
93. mcm6 ENSDARG00000057683, ENSDARG00000113317 6591 1.571 - 0.788 - - - - - - 0.783 minichromosome maintenance complex component 6 [Source:ZFIN;Acc:ZDB-GENE-030909-6]
94. zranb2 ENSDARG00000044332 6723 1.568 - 0.788 - - - - - - 0.780 zinc finger, RAN-binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2743]
95. psma8 ENSDARG00000010965 8321 1.566 - 0.799 - - - 0.767 - - - proteasome subunit alpha 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2194]
96. psmd1 ENSDARG00000003189 4373 1.565 - 0.810 - - - - - 0.755 - proteasome 26S subunit, non-ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-810]
97. tmpob ENSDARG00000022978 8121 1.563 - 0.798 - - - - - - 0.765 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
98. rbm14a ENSDARG00000012723, ENSDARG00000114603 3802 1.561 - - - - 0.781 - - - 0.780 RNA binding motif protein 14a [Source:ZFIN;Acc:ZDB-GENE-050522-496]
99. nhp2l1b nhp2l1b 3898 1.56 - - - - 0.804 - - 0.756 -
100. sf3a1 ENSDARG00000041887 6702 1.559 - - - - 0.776 - - - 0.783 splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]

There are 1860 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA