Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for msi1

Gene Name Gene ID Reads Annotation
msi1 ENSDARG00000010710 2634 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]










Genes with expression patterns similar to msi1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. msi1 ENSDARG00000010710 2634 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
2. cspg5a ENSDARG00000069981 1699 5.033 0.785 0.775 0.817 - - 0.806 0.947 - 0.903 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
3. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 4.993 - - 0.747 - 0.899 0.886 0.847 0.818 0.796 dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
4. TUBB8P7_1 TUBB8P7_1 2722 4.991 0.725 0.814 - - 0.895 0.868 0.920 0.769 -
5. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 4.477 0.849 - 0.839 - 0.908 0.914 0.967 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
6. irx1b ENSDARG00000056594 2224 4.226 0.720 0.852 - - - 0.878 0.982 - 0.794 iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
7. plp1a ENSDARG00000103732 3544 4.205 0.710 - - - - 0.855 0.941 0.865 0.834 proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
8. fzd3a ENSDARG00000021664 1958 4.157 0.848 - 0.858 0.780 - 0.795 0.876 - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
9. rheb ENSDARG00000090213 1432 4.051 0.758 0.736 - - - 0.888 0.851 - 0.818 Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
10. AKT3 AKT3 1729 3.637 - - - - - 0.889 0.966 0.903 0.879
11. UBE2QL1 ENSDARG00000079276 3474 3.57 0.882 - - - 0.890 0.867 0.931 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
12. myt1b ENSDARG00000102879 5411 3.56 0.731 - - - - 0.957 0.977 - 0.895 myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
13. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 3.554 0.821 - 0.788 - - 0.964 0.981 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
14. AGO1 ENSDARG00000092644 4521 3.536 0.849 - 0.803 - - 0.940 0.944 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
15. nova2 ENSDARG00000017673 7685 3.532 0.732 - - - - 0.976 0.958 - 0.866 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
16. EPB41L1 EPB41L1 1896 3.529 0.809 0.862 - - - 0.914 0.944 - -
17. mex3b ENSDARG00000058369 1867 3.5 - - 0.788 - - - 0.945 0.873 0.894 mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
18. tuba1c ENSDARG00000055216 8384 3.444 0.751 - - - - 0.931 0.983 - 0.779 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
19. ZFHX3 ENSDARG00000103057 7759 3.443 0.801 - 0.778 - - 0.930 0.934 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
20. pcdh1gc5 ENSDARG00000104826 10052 3.437 0.856 - 0.720 - - 0.900 0.961 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
21. CABZ01111990.1 CABZ01111990.1 4374 3.436 - - 0.727 - - 0.898 0.967 - 0.844
22. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 3.394 - - 0.808 - - 0.933 0.800 - 0.853 C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
23. neurog1 ENSDARG00000056130 3924 3.391 0.757 0.720 - - - 0.954 0.960 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
24. epha4b ENSDARG00000011600 3110 3.388 0.802 0.701 - - - 0.945 0.940 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
25. nadl1.1 1200 3.386 0.779 0.706 - - - 0.961 0.940 - - neural adhesion molecule L1.1, transcript variant X1
26. ctnnd2b ENSDARG00000003779 964 3.382 - 0.710 0.840 - - 0.882 0.950 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
27. si:ch73-21g5.7 ENSDARG00000093156 9412 3.356 0.786 - 0.791 - - 0.808 0.971 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
28. her4.1 ENSDARG00000056732 1264 3.355 - - 0.729 - - 0.885 0.855 - 0.886 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
29. stmn1b ENSDARG00000033655 9491 3.347 0.744 - - - - 0.738 0.958 - 0.907 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
30. C24H17orf96 C24H17orf96 1538 3.33 - - 0.711 - 0.914 - 0.869 0.836 -
31. EFCC1 ENSDARG00000077826 1359 3.323 0.793 - 0.726 - - 0.908 0.896 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
32. ppp3ca ENSDARG00000004988 615 3.321 0.856 0.762 - - - 0.789 0.914 - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
33. nrn1a ENSDARG00000071860 1311 3.321 - - - - - 0.826 0.895 0.750 0.850 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
34. cldn5a ENSDARG00000043716 3865 3.315 0.814 0.755 - - - 0.827 0.919 - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
35. npas3b npas3b 1446 3.305 - - 0.845 - - 0.733 0.944 - 0.783
36. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 3.296 0.777 - - - - 0.888 0.836 - 0.795 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
37. tmpob ENSDARG00000022978 8121 3.294 - - 0.873 - - 0.785 0.885 - 0.751 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
38. dla ENSDARG00000010791 9281 3.291 0.830 0.762 - - - - 0.972 - 0.727 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
39. dpysl5a ENSDARG00000011141 1827 3.27 0.766 - 0.741 - - 0.793 0.970 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
40. fabp7a ENSDARG00000007697 5211 3.246 - - 0.784 - - 0.815 0.854 - 0.793 fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
41. Sep-03 Sep-03 1124 3.245 - 0.734 0.756 - - 0.878 0.877 - -
42. scube2 ENSDARG00000037362 2833 3.242 0.755 - - - 0.869 0.833 0.785 - - signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
43. rtn1b ENSDARG00000021143 1682 3.239 0.815 0.707 - - - 0.842 0.875 - - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
44. odz4 odz4 822 3.238 - - 0.721 - 0.906 0.846 0.765 - -
45. hmgb3a ENSDARG00000056725 15668 3.237 0.712 - - - - 0.944 0.822 - 0.759 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
46. FP016176.1 FP016176.1 7030 3.234 0.743 - - - - 0.880 0.889 - 0.722
47. wu:fc51f04 wu:fc51f04 7074 3.232 - 0.751 - - 0.854 - - 0.851 0.776
48. ttyh2 ENSDARG00000016934 1868 3.225 - - 0.748 - 0.968 0.716 0.793 - - tweety family member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-193]
49. arnt2 ENSDARG00000103697 5731 3.221 - - 0.770 - - 0.911 0.729 - 0.811 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
50. stmn2a ENSDARG00000033234 2272 3.199 0.702 - - - - 0.795 0.956 - 0.746 stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
51. sox3 ENSDARG00000053569 12016 3.189 0.858 0.811 0.814 - - - 0.706 - - SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
52. fam60al 2846 3.181 0.753 - 0.775 - - 0.838 0.815 - - family with sequence similarity 60, member A, like
53. nkain1 ENSDARG00000006859 1961 3.174 - - 0.722 0.779 - 0.862 0.811 - - sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
54. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 3.164 - 0.706 0.750 - - 0.980 - - 0.728 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
55. xpr1 xpr1 840 3.149 - - - - - 0.715 0.819 0.807 0.808
56. atp1b4 ENSDARG00000053262 1337 3.142 0.738 - - - - 0.821 0.856 0.727 - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
57. ephb3a ENSDARG00000031548 1872 3.131 - - 0.722 - - 0.835 0.726 - 0.848 eph receptor B3a [Source:ZFIN;Acc:ZDB-GENE-990415-60]
58. lfng ENSDARG00000037879 11783 3.128 0.738 0.716 - - - 0.956 - - 0.718 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
59. dbx1b ENSDARG00000001859, ENSDARG00000113468 810 3.116 - 0.735 - 0.708 - 0.790 0.883 - - developing brain homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-000128-11]
60. ptbp2b ENSDARG00000015901 2458 3.108 0.783 - - - - 0.743 0.789 0.793 - polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
61. mdkb ENSDARG00000020708 5393 3.108 - - 0.760 - - 0.752 0.805 - 0.791 midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
62. cd99l2 ENSDARG00000056722 5036 3.102 0.709 - - - - 0.801 0.769 - 0.823 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
63. CR936437.1 CR936437.1 6465 3.087 0.726 - 0.839 0.756 - - - - 0.766
64. kdm1a ENSDARG00000060679 6152 3.077 0.737 - 0.811 - 0.822 - 0.707 - - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
65. srsf4 ENSDARG00000105293 9657 3.013 0.706 - - 0.710 0.849 0.748 - - - serine/arginine-rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591]
66. atp6v0cb ENSDARG00000036577 3472 2.852 - - - - 0.941 0.935 0.976 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
67. tmem35 ENSDARG00000052567 5685 2.803 - - - - 0.916 0.948 0.939 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
68. hmgb1b ENSDARG00000030479 10398 2.745 - - 0.914 - - 0.924 0.907 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
69. kcnc3a ENSDARG00000055855 1821 2.735 0.850 - - - - 0.908 0.977 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
70. nrarpb ENSDARG00000018958 6225 2.729 - - - - 0.830 0.939 0.960 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
71. nova1 ENSDARG00000020178 4129 2.717 - 0.818 - - - 0.925 0.974 - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
72. mir10d-1 mir10d-1 860 2.714 0.892 - - - - 0.900 0.922 - -
73. dnajc5aa ENSDARG00000042948 2885 2.713 0.843 - - - - 0.902 0.968 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
74. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 2.697 - - - - - 0.833 0.991 - 0.873 immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
75. vgf ENSDARG00000105529 247 2.69 0.808 - - - - 0.950 0.932 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
76. stx1b ENSDARG00000000503 2724 2.689 0.793 - - - - 0.923 0.973 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
77. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 2.688 - - - - - 0.893 0.956 - 0.839 myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
78. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.679 0.837 - - - - 0.873 0.969 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
79. cdk5r1b ENSDARG00000045087 2075 2.676 - 0.771 - - - 0.961 0.944 - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
80. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.676 - 0.871 - - - 0.836 0.969 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
81. C8H1orf106 C8H1orf106 2690 2.673 0.871 - - - - 0.914 0.888 - -
82. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 2.672 - - - - - 0.934 0.930 - 0.808 POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
83. calm1a ENSDARG00000021811 4791 2.672 - - - - 0.906 0.921 0.845 - - calmodulin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8308]
84. gfap ENSDARG00000025301 5584 2.667 0.755 - - - - 0.933 0.979 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
85. scrt2 ENSDARG00000056175 4331 2.666 0.835 - - - - 0.888 0.943 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
86. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.662 0.726 - - - - 0.987 0.949 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
87. sv2bb ENSDARG00000060711 196 2.662 0.910 - - - - 0.771 0.981 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
88. BX511121.1 ENSDARG00000029997 1774 2.656 - 0.885 - - - 0.891 0.880 - -
89. her4.3 ENSDARG00000070770 613 2.655 0.873 - - - - 0.886 0.896 - - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
90. dpysl3 ENSDARG00000002587 4381 2.649 - - - - - 0.932 0.971 - 0.746 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
91. dld ENSDARG00000020219 4928 2.636 0.824 0.880 - - - - 0.932 - - deltaD [Source:ZFIN;Acc:ZDB-GENE-990415-47]
92. gng3 ENSDARG00000009553 2530 2.631 0.850 - - - - 0.803 0.978 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
93. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.629 - - 0.733 - - 0.918 0.978 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
94. pax6a ENSDARG00000103379 3061 2.628 0.739 - - - - 0.943 0.946 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
95. slc8a2b ENSDARG00000100592 598 2.623 0.818 - - - - 0.828 0.977 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
96. ptprsb 1085 2.617 - - - - - 0.919 0.826 - 0.872 protein tyrosine phosphatase, receptor type, s, b
97. ptprna ENSDARG00000058646 1327 2.616 - - 0.775 - - 0.929 0.912 - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
98. TNRC6C_2 TNRC6C_2 2444 2.613 - - 0.807 - - 0.933 0.873 - -
99. glrbb ENSDARG00000052769, ENSDARG00000113828 467 2.609 0.757 - - - - 0.891 0.961 - - glycine receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-040801-106]
100. calm3a ENSDARG00000015050, ENSDARG00000100825 1817 2.608 - - - - 0.888 0.814 0.906 - - calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]

There are 2491 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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