Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for msh2

Gene Name Gene ID Reads Annotation
msh2 ENSDARG00000018022, ENSDARG00000115185 1301 mutS homolog 2 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-040426-2932]










Genes with expression patterns similar to msh2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. msh2 ENSDARG00000018022, ENSDARG00000115185 1301 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 mutS homolog 2 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-040426-2932]
2. h2afx ENSDARG00000029406 2116 2.439 - - - - 0.938 0.724 - 0.777 - H2A histone family, member X [Source:ZFIN;Acc:ZDB-GENE-040426-987]
3. tbl1x ENSDARG00000060438 1386 1.987 - 1.000 - - 0.987 - - - - transducin beta like 1 X-linked [Source:ZFIN;Acc:ZDB-GENE-070209-131]
4. smo ENSDARG00000002952 6411 1.977 - 0.997 - - 0.980 - - - - smoothened, frizzled class receptor [Source:ZFIN;Acc:ZDB-GENE-980526-89]
5. lima1 lima1 4760 1.973 - 0.998 - - 0.975 - - - -
6. C1H7orf55 C1H7orf55 2552 1.971 - 0.998 - - 0.973 - - - -
7. ebna1bp2 ENSDARG00000054980 4621 1.916 - 0.993 - - 0.923 - - - - EBNA1 binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6989]
8. lin54 ENSDARG00000063194 2583 1.887 - - - - 0.984 - - 0.903 - lin-54 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-060929-440]
9. hey2 ENSDARG00000013441 540 1.878 - - - - 0.990 - - 0.888 - hes-related family bHLH transcription factor with YRPW motif 2 [Source:ZFIN;Acc:ZDB-GENE-000526-1]
10. FP245444.1 FP245444.1 1922 1.851 - 0.865 - - 0.986 - - - -
11. FBXO33 ENSDARG00000075400 1164 1.845 - - - - 0.991 - - 0.854 - F-box protein 33 [Source:ZFIN;Acc:ZDB-GENE-100618-2]
12. srpk1b ENSDARG00000031560 2079 1.766 - - - - 0.963 - - 0.803 - SRSF protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2292]
13. tom1l2 ENSDARG00000009217, ENSDARG00000111492 1639 1.748 - - - - 0.983 0.765 - - - target of myb1 like 2 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-061013-3]
14. nup50 ENSDARG00000017454 4425 1.722 - - 0.757 - 0.965 - - - - nucleoporin 50 [Source:ZFIN;Acc:ZDB-GENE-030131-1689]
15. PLEKHG1 2100 1.719 - 0.999 - - - - - 0.720 - pleckstrin homology and RhoGEF domain containing G1, transcript variant X2
16. txlna ENSDARG00000077037 2614 1.71 - - - - 0.975 - 0.735 - - taxilin alpha [Source:ZFIN;Acc:ZDB-GENE-030131-2900]
17. dlg3_1 ENSDARG00000076796, ENSDARG00000111101 1542 1.705 - - - - 0.984 - 0.721 - - discs, large homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050208-93]
18. gins2 ENSDARG00000002304 1187 1.705 - - - - 0.974 - 0.731 - - GINS complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050419-19]
19. axin2 ENSDARG00000100149 4223 1.683 - - - - 0.941 - 0.742 - - axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
20. Mar-02 Mar-02 1812 1.642 - - - - - - 0.741 0.901 -
21. PTGFRN_1 ENSDARG00000075505 1447 1.637 - - - - 0.913 - 0.724 - - prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
22. CABZ01081749.1 CABZ01081749.1 637 1.618 - - - - - - 0.725 0.893 -
23. ndc1 ENSDARG00000021120 2417 1.618 - - - - - 0.718 - 0.900 - NDC1 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-7176]
24. phf21ab ENSDARG00000021378 1706 1.599 - - - - 0.730 - - 0.869 - PHD finger protein 21Ab [Source:ZFIN;Acc:ZDB-GENE-030131-6456]
25. eif3s10 ENSDARG00000076815 10822 1.581 - 0.858 - - 0.723 - - - - eukaryotic translation initiation factor 3, subunit 10 (theta) [Source:ZFIN;Acc:ZDB-GENE-030131-5726]
26. klhl18 ENSDARG00000004306 448 1.575 0.703 - - - - - - 0.872 - kelch-like family member 18 [Source:ZFIN;Acc:ZDB-GENE-030131-5785]
27. rspry1 ENSDARG00000062558 1424 1.559 - - - - - - 0.768 0.791 - ring finger and SPRY domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061026-2]
28. yeats4 ENSDARG00000045874 1168 1.556 - - - - - 0.743 - 0.813 - YEATS domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040718-252]
29. sult6b1 ENSDARG00000086826 2070 1.535 - - - - - - 0.747 0.788 - sulfotransferase family, cytosolic, 6b, member 1 [Source:ZFIN;Acc:ZDB-GENE-050417-228]
30. chsy1 ENSDARG00000079027 455 1.51 - - - - - - 0.702 0.808 - chondroitin sulfate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3127]
31. arhgef4 ENSDARG00000012914 1464 1.503 - - - - - 0.713 - 0.790 - Rho guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-575]
32. prrc1 ENSDARG00000044304 1567 1.495 0.709 - - - - - 0.786 - - proline-rich coiled-coil 1 [Source:ZFIN;Acc:ZDB-GENE-041024-9]
33. CABZ01003826.1_1 CABZ01003826.1_1 1154 1.466 - - - - - - 0.712 0.754 -
34. uba5 ENSDARG00000063588 1260 1 - 1.000 - - - - - - - ubiquitin-like modifier activating enzyme 5 [Source:ZFIN;Acc:ZDB-GENE-031112-2]
35. and3 ENSDARG00000056873 22650 1 - 1.000 - - - - - - - actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
36. CR352249.1 ENSDARG00000114701 857 1 - 1.000 - - - - - - - solute carrier family 38, member 8b [Source:NCBI gene;Acc:795255]
37. zic2a ENSDARG00000015554 2860 1 - 1.000 - - - - - - - zic family member 2 (odd-paired homolog, Drosophila), a [Source:ZFIN;Acc:ZDB-GENE-000710-4]
38. gprc5c ENSDARG00000100862 457 1 - 1.000 - - - - - - - G protein-coupled receptor, class C, group 5, member C [Source:ZFIN;Acc:ZDB-GENE-070928-27]
39. malt1a malt1a 903 1 - 1.000 - - - - - - -
40. mettl16 ENSDARG00000055838 818 1 - 1.000 - - - - - - - methyltransferase like 16 [Source:ZFIN;Acc:ZDB-GENE-040801-130]
41. atraid ENSDARG00000043388 648 1 - 1.000 - - - - - - - all-trans retinoic acid-induced differentiation factor [Source:ZFIN;Acc:ZDB-GENE-040724-177]
42. wu:fc47e11 539 1 - 1.000 - - - - - - - wu:fc47e11
43. C4H12orf45 C4H12orf45 483 1 - 1.000 - - - - - - -
44. mboat7 ENSDARG00000033436 848 1 - 1.000 - - - - - - - membrane bound O-acyltransferase domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1516]
45. CU019646.2 CU019646.2 519 1 - 1.000 - - - - - - -
46. gpatch1 ENSDARG00000033418 1349 1 - 1.000 - - - - - - - G patch domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040914-65]
47. frem1a ENSDARG00000069473 1847 1 - 1.000 - - - - - - - Fras1 related extracellular matrix 1a [Source:ZFIN;Acc:ZDB-GENE-081119-1]
48. SCARF2 1117 1 - 1.000 - - - - - - - scavenger receptor class F, member 2
49. TSPY2 TSPY2 1371 0.999 - 0.999 - - - - - - -
50. CR847934.1 CR847934.1 2658 0.999 - 0.999 - - - - - - -
51. ZDHHC5 ZDHHC5 836 0.999 - 0.999 - - - - - - -
52. dynll2a ENSDARG00000069790, ENSDARG00000114539 2328 0.999 - 0.999 - - - - - - - dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11]
53. slc38a5a ENSDARG00000009901 2527 0.999 - 0.999 - - - - - - - solute carrier family 38, member 5a [Source:ZFIN;Acc:ZDB-GENE-081105-92]
54. agla ENSDARG00000103811 2856 0.999 - 0.999 - - - - - - - amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase a [Source:ZFIN;Acc:ZDB-GENE-071004-6]
55. dnajc18 ENSDARG00000056005 8084 0.999 - 0.999 - - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 18 [Source:ZFIN;Acc:ZDB-GENE-030131-8019]
56. taf5 ENSDARG00000018325 1363 0.999 - 0.999 - - - - - - - TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-051120-180]
57. cxxc5a ENSDARG00000078865 3447 0.999 - 0.999 - - - - - - - CXXC finger protein 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3178]
58. PEAK1 ENSDARG00000079756 1330 0.999 - 0.999 - - - - - - - pseudopodium-enriched atypical kinase 1 [Source:ZFIN;Acc:ZDB-GENE-100422-1]
59. wdr75 ENSDARG00000040730 1247 0.999 - 0.999 - - - - - - - WD repeat domain 75 [Source:ZFIN;Acc:ZDB-GENE-030616-5]
60. gpc4 ENSDARG00000015472 2529 0.999 - 0.999 - - - - - - - glypican 4 [Source:ZFIN;Acc:ZDB-GENE-011119-1]
61. nxn ENSDARG00000033978, ENSDARG00000115888 1683 0.999 - 0.999 - - - - - - - nucleoredoxin [Source:ZFIN;Acc:ZDB-GENE-050522-75]
62. pard6b ENSDARG00000003865 990 0.999 - 0.999 - - - - - - - par-6 partitioning defective 6 homolog beta (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-090312-133]
63. akr1b1 ENSDARG00000006215 2511 0.999 - 0.999 - - - - - - - aldo-keto reductase family 1, member B1 (aldose reductase) [Source:ZFIN;Acc:ZDB-GENE-040625-7]
64. cdk16_1 ENSDARG00000032072 2031 0.999 - 0.999 - - - - - - - cyclin-dependent kinase 16 [Source:ZFIN;Acc:ZDB-GENE-030131-2939]
65. wasf3 wasf3 3287 0.999 - 0.999 - - - - - - -
66. sipa1l2 ENSDARG00000061640 4545 0.998 - 0.998 - - - - - - - signal-induced proliferation-associated 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-050208-66]
67. oxa1l ENSDARG00000069313, ENSDARG00000113799 1687 0.998 - 0.998 - - - - - - - oxidase (cytochrome c) assembly 1-like [Source:ZFIN;Acc:ZDB-GENE-071004-49]
68. ENSDARG00000092971 ENSDARG00000092971 563 0.998 - 0.998 - - - - - - -
69. PRODH_1 PRODH_1 3400 0.998 - 0.998 - - - - - - -
70. polr2d ENSDARG00000076509 3386 0.998 - 0.998 - - - - - - - polymerase (RNA) II (DNA directed) polypeptide D [Source:ZFIN;Acc:ZDB-GENE-040714-2]
71. ythdc1 ENSDARG00000051953, ENSDARG00000114892 4752 0.998 - 0.998 - - - - - - - YTH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-114]
72. ccne2 ENSDARG00000098529 4695 0.998 - 0.998 - - - - - - - cyclin E2 [Source:ZFIN;Acc:ZDB-GENE-030131-9689]
73. vash2 ENSDARG00000007774 2537 0.998 - 0.998 - - - - - - - vasohibin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-355]
74. rrp1 ENSDARG00000103337 2366 0.997 - 0.997 - - - - - - - ribosomal RNA processing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9837]
75. dnajb12b ENSDARG00000087473 3811 0.997 - 0.997 - - - - - - - DnaJ (Hsp40) homolog, subfamily B, member 12b [Source:ZFIN;Acc:ZDB-GENE-070410-128]
76. acsl3b ENSDARG00000014674 3748 0.997 - 0.997 - - - - - - - acyl-CoA synthetase long chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
77. ACVR1B ACVR1B 4824 0.997 - 0.997 - - - - - - -
78. arfgef2 ENSDARG00000074702 1593 0.996 - 0.996 - - - - - - - ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) [Source:ZFIN;Acc:ZDB-GENE-090312-50]
79. si:ch211-114c12.2 ENSDARG00000028542, ENSDARG00000111053 5495 0.996 - 0.996 - - - - - - - si:ch211-114c12.2 [Source:ZFIN;Acc:ZDB-GENE-030131-8522]
80. ezra ENSDARG00000020944 3105 0.996 - 0.996 - - - - - - - ezrin a [Source:ZFIN;Acc:ZDB-GENE-050522-18]
81. dnajc5aa ENSDARG00000042948 2885 0.995 - 0.995 - - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
82. arhgap1 ENSDARG00000024324 6904 0.995 - 0.995 - - - - - - - Rho GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-305]
83. lonrf1l ENSDARG00000078567 1049 0.994 - 0.994 - - - - - - - LON peptidase N-terminal domain and ring finger 1, like [Source:ZFIN;Acc:ZDB-GENE-081104-397]
84. and1 ENSDARG00000088514 37603 0.994 - 0.994 - - - - - - - actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
85. cuedc2 ENSDARG00000039365 484 0.994 - - - - 0.994 - - - - CUE domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6283]
86. BX005008.2 BX005008.2 708 0.993 - - - - 0.993 - - - -
87. ccr10 ENSDARG00000040643 255 0.993 - - - - 0.993 - - - - chemokine (C-C motif) receptor 10 [Source:ZFIN;Acc:ZDB-GENE-040718-424]
88. tmem88a ENSDARG00000056920 536 0.993 - - - - 0.993 - - - - transmembrane protein 88 a [Source:ZFIN;Acc:ZDB-GENE-040426-1808]
89. msxe msxe 362 0.993 - - - - 0.993 - - - -
90. gorab ENSDARG00000042031 483 0.993 - - - - 0.993 - - - - golgin, rab6-interacting [Source:ZFIN;Acc:ZDB-GENE-040426-1384]
91. FOXL2 239 0.993 - - - - 0.993 - - - - forkhead box L2, transcript variant X1
92. lzts2a ENSDARG00000074597, ENSDARG00000113794 7477 0.993 - 0.993 - - - - - - - leucine zipper, putative tumor suppressor 2a [Source:ZFIN;Acc:ZDB-GENE-090313-276]
93. ccdc28b ENSDARG00000011222 528 0.992 - - - - 0.992 - - - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
94. MANBAL ENSDARG00000059853 636 0.992 - - - - 0.992 - - - - mannosidase beta like [Source:ZFIN;Acc:ZDB-GENE-161222-1]
95. trappc1 ENSDARG00000039005 6990 0.992 - 0.992 - - - - - - - trafficking protein particle complex 1 [Source:ZFIN;Acc:ZDB-GENE-040718-242]
96. fut8 fut8 652 0.992 - - - - 0.992 - - - -
97. ercc6 ENSDARG00000075612 1175 0.992 - - - - 0.992 - - - - excision repair cross-complementation group 6 [Source:ZFIN;Acc:ZDB-GENE-070228-1]
98. slc2a15b ENSDARG00000053269 899 0.992 - - - - 0.992 - - - - solute carrier family 2 (facilitated glucose transporter), member 15b [Source:ZFIN;Acc:ZDB-GENE-050508-1]
99. atxn7l3 ENSDARG00000029331 531 0.992 - - - - 0.992 - - - - ataxin 7-like 3 [Source:ZFIN;Acc:ZDB-GENE-030616-253]
100. lrch2 ENSDARG00000075580, ENSDARG00000116418 255 0.992 - - - - 0.992 - - - - leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-080114-1]

There are 1007 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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